Matej Cepl
5e9f6a5bb9
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-ruffus?expand=0&rev=12
85 lines
2.4 KiB
RPMSpec
85 lines
2.4 KiB
RPMSpec
#
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# spec file for package python-ruffus
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#
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# Copyright (c) 2022 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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%{?!python_module:%define python_module() python-%{**} python3-%{**}}
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Name: python-ruffus
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Version: 2.8.4
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Release: 0
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Summary: Python computational pipeline management package
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License: MIT
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Group: Development/Languages/Python
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URL: https://github.com/cgat-developers/ruffus
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Source: https://files.pythonhosted.org/packages/source/r/ruffus/ruffus-%{version}.tar.gz
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BuildRequires: %{python_module setuptools}
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BuildRequires: fdupes
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BuildRequires: hostname
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BuildRequires: python-rpm-macros
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BuildArch: noarch
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# SECTION test requirements
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BuildRequires: %{python_module pytest}
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BuildRequires: %{pythons}
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# /SECTION
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%python_subpackages
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%description
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The Ruffus module is a way to add support for running computational pipelines.
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%prep
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%setup -q -n ruffus-%{version}
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# gh#cgat-developers/ruffus#123
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rm ruffus/test/test_functions_with_extras.py
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rm ruffus/test/*.cmd
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sed -i -e '/^#!\//, 1d' ruffus/*.py
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sed -i -e '/^#! \//, 1d' ruffus/*.py
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sed -i -e '/^#!\//, 1d' ruffus/test/*.py
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sed -i -e '/^#! \//, 1d' ruffus/test/*.py
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chmod a-x ruffus/*.py
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chmod a-x ruffus/test/*.py
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%build
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%python_build
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%install
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%python_install
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%python_expand %fdupes %{buildroot}%{$python_sitelib}
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%check
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pushd ruffus/test
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%{python_expand # yes, the test files need to be called in separate pytest calls
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export PYTHONPATH=%{buildroot}%{$python_sitelib}
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export PYTHONDONTWRITEBYTECODE=1
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for f in test_*.py; do
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[ $f -ef test_with_logger.py ] && continue # segfault on obs server (not local)
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pytest-%{$python_bin_suffix} -v $f
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done
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for f in check_*.py; do
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$python $f
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done
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}
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popd
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%files %{python_files}
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%doc CHANGES.TXT README.rst
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%license LICENSE.TXT
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%{python_sitelib}/ruffus
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%{python_sitelib}/ruffus-%{version}*-info
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%changelog
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