Accepting request 888258 from devel:languages:python:numeric
OBS-URL: https://build.opensuse.org/request/show/888258 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-sherpa?expand=0&rev=8
This commit is contained in:
Dominique Leuenberger
Git OBS Bridge
commit
b40171e0be
@ -1,3 +1,13 @@
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-------------------------------------------------------------------
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Sat Apr 24 18:40:06 UTC 2021 - Ben Greiner <code@bnavigator.de>
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- Fix python3 flavor multibuild:
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* Compile bundled libs for every flavor
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* Fix bundled lib location configuration
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* Use system fftw3
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- Enable tests with matplotlib and astropy
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- Add sherpa-mpl-3.4.patch for Matplotlib 3.4 gh#sherpa/sherpa#1125
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-------------------------------------------------------------------
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Wed Feb 17 00:07:40 UTC 2021 - Atri Bhattacharya <badshah400@gmail.com>
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@ -31,27 +31,28 @@ Patch1: reproducible.patch
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Patch2: sherpa-fix-aarch64.patch
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# PATCH-FIX-UPSTREAM sherpa-numpy-1.20.patch badshah400@gmail.com - Fix test errors with numpy 1.20 [https://github.com/sherpa/sherpa/pull/1092]
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Patch3: sherpa-numpy-1.20.patch
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# PATCH-FIX-UPSTREAM sherpa-mpl-3.4.patch -- https://github.com/sherpa/sherpa/pull/1125
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Patch4: sherpa-mpl-3.4.patch
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BuildRequires: %{python_module devel}
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BuildRequires: %{python_module numpy-devel}
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BuildRequires: %{python_module setuptools}
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BuildRequires: bison
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BuildRequires: fdupes
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BuildRequires: fftw3-devel
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BuildRequires: flex
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BuildRequires: gcc-c++
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BuildRequires: gcc-fortran
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BuildRequires: python-rpm-macros
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Requires: python-numpy
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Requires: python-six
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Requires(post): update-alternatives
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Requires(postun): update-alternatives
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Requires(postun):update-alternatives
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ExcludeArch: %{ix86}
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# SECTION test requirements
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BuildRequires: %{python_module mock}
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BuildRequires: %{python_module pytest >= 3.3}
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BuildRequires: %{python_module pytest-xvfb}
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BuildRequires: %{python_module six}
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BuildRequires: xauth
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BuildRequires: xorg-x11-server
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# Highly recommended by upstream when building from source https://sherpa.readthedocs.io/en/latest/install.html#building-from-source
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BuildRequires: %{python_module astropy}
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BuildRequires: %{python_module matplotlib}
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# /SECTION
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%python_subpackages
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@ -63,37 +64,40 @@ data, using a variety of statistics and optimization methods.
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%prep
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%setup -q -n sherpa-%{version}
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%autopatch -p1
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sed -i 's|#stk-location|stk-location|' setup.cfg
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sed -i 's|#group-location|group-location|' setup.cfg
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sed -i "s|#fftw=local|fftw=local|" setup.cfg
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sed -i "s|#fftw-include[-_]dirs.*$|fftw-include-dirs=%{_includedir}|" setup.cfg
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sed -i "s|#fftw-lib-dirs.*$|fftw-lib-dirs=%{_libdir}|" setup.cfg
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sed -i "s|#fftw-libraries|fftw-libraries|" setup.cfg
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sed -i "s|/lib/|/%{_lib}/|" helpers/sherpa_config.py
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%build
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%{python_expand sed -i 's|stk-location=.*|stk-location=build/%{_lib}/python%{$python_version}/site-packages/stk.so|' setup.cfg
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sed -i 's|group-location=.*|group-location=build/%{_lib}/python%{$python_version}/site-packages/group.so|' setup.cfg
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%{$python_build}
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cp -r extern extern0
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%{python_expand %{$python_build}
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rm -r extern
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cp -r extern0 extern
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}
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%install
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%{python_expand sed -i 's|stk-location=.*|stk-location=build/%{_lib}/python%{$python_version}/site-packages/stk.so|' setup.cfg
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sed -i 's|group-location=.*|group-location=build/%{_lib}/python%{$python_version}/site-packages/group.so|' setup.cfg
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%{$python_install}
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}
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%python_install
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%python_clone -a %{buildroot}%{_bindir}/sherpa_test
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%python_clone -a %{buildroot}%{_bindir}/sherpa_smoke
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%python_expand %fdupes %{buildroot}%{$python_sitearch}
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# REMOVE HASHBANGS FROM NON-EXEC FILES
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%{python_expand sed -i "1{/\\/usr\\/bin\\/env python/d}" %{buildroot}%{$python_sitearch}/sherpa/optmethods/ncoresde.py
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%{python_expand # REMOVE HASHBANGS FROM NON-EXEC FILES
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sed -i "1{/\\/usr\\/bin\\/env python/d}" %{buildroot}%{$python_sitearch}/sherpa/optmethods/ncoresde.py
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sed -i "1{/\\/usr\\/bin\\/env python/d}" %{buildroot}%{$python_sitearch}/sherpa/optmethods/ncoresnm.py
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sed -i "1{/\\/usr\\/bin\\/env python/d}" %{buildroot}%{$python_sitearch}/sherpa/optmethods/opt.py
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sed -i "1{/\\/usr\\/bin\\/env python/d}" %{buildroot}%{$python_sitearch}/sherpa/utils/akima.py
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}
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%check
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export PYTHONDONTWRITEBYTECODE=x
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# avoid conftest import mismatch
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mv sherpa sherpa_temp
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%python_expand ls -l %{buildroot}%{$python_sitearch}/sherpa/utils/
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ls -l *build*/*/*/
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%pytest_arch %{buildroot}%{$python_sitearch}/sherpa/
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mv sherpa_temp sherpa
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# astropy 4.2 fits header warning
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donttest+="test_load_case_3"
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%pytest_arch --pyargs sherpa -k "not ($donttest)"
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%post
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%python_install_alternative sherpa_smoke
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@ -108,6 +112,9 @@ mv sherpa_temp sherpa
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%license LICENSE
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%python_alternative %{_bindir}/sherpa_test
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%python_alternative %{_bindir}/sherpa_smoke
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%{python_sitearch}/*
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%{python_sitearch}/sherpa
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%{python_sitearch}/sherpa-%{version}*-info
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%{python_sitearch}/stk.so
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%{python_sitearch}/group.so
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%changelog
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150
sherpa-mpl-3.4.patch
Normal file
150
sherpa-mpl-3.4.patch
Normal file
@ -0,0 +1,150 @@
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From 0187ded7223bbaded8022a28561182846b17ceb3 Mon Sep 17 00:00:00 2001
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From: Douglas Burke <dburke.gw@gmail.com>
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Date: Tue, 13 Apr 2021 16:29:45 -0400
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Subject: [PATCH 1/2] matlpotlib 3.4 has removed drawstyle from axes.errorbar
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The drawstyle argument has now been removed from some commands -
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this appears to just be the axes.errorbar function - in matplotlib
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version 3.4.
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---
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sherpa/plot/pylab_backend.py | 4 +---
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1 file changed, 1 insertion(+), 3 deletions(-)
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Index: sherpa-4.13.0/sherpa/plot/pylab_backend.py
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===================================================================
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--- sherpa-4.13.0.orig/sherpa/plot/pylab_backend.py
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+++ sherpa-4.13.0/sherpa/plot/pylab_backend.py
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@@ -1,6 +1,6 @@
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#
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-# Copyright (C) 2010, 2015, 2017, 2019, 2020
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-# Smithsonian Astrophysical Observatory
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+# Copyright (C) 2010, 2015, 2017, 2019, 2020, 2021
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+# Smithsonian Astrophysical Observatory
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#
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#
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# This program is free software; you can redistribute it and/or modify
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@@ -316,7 +316,6 @@ def histo(xlo, xhi, y, yerr=None, title=
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color=color,
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alpha=alpha,
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linestyle='',
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- drawstyle=drawstyle,
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marker=marker,
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markersize=markersize,
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markerfacecolor=markerfacecolor,
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@@ -446,7 +445,6 @@ def plot(x, y, yerr=None, xerr=None, tit
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objs = axes.errorbar(x, y, yerr, xerr,
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color=color,
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linestyle=linestyle,
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- drawstyle=drawstyle,
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marker=marker,
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markersize=markersize,
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markerfacecolor=markerfacecolor,
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Index: sherpa-4.13.0/sherpa/astro/ui/tests/test_astro_ui_plot.py
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===================================================================
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--- sherpa-4.13.0.orig/sherpa/astro/ui/tests/test_astro_ui_plot.py
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+++ sherpa-4.13.0/sherpa/astro/ui/tests/test_astro_ui_plot.py
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@@ -1,5 +1,6 @@
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#
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-# Copyright (C) 2019, 2020 Smithsonian Astrophysical Observatory
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+# Copyright (C) 2019, 2020, 2021
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+# Smithsonian Astrophysical Observatory
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#
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#
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# This program is free software; you can redistribute it and/or modify
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@@ -1168,7 +1169,8 @@ def test_img_contour_function_kwarg(clea
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for i, ax in enumerate(axes, 1):
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- assert ax.get_geometry() == (2, 2, i)
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+ w = i - 1
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+ assert ax.get_subplotspec().get_geometry() == (2, 2, w, w)
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assert ax.get_xscale() == 'linear'
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assert ax.get_yscale() == 'linear'
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Index: sherpa-4.13.0/sherpa/ui/tests/test_ui_plot.py
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===================================================================
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--- sherpa-4.13.0.orig/sherpa/ui/tests/test_ui_plot.py
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+++ sherpa-4.13.0/sherpa/ui/tests/test_ui_plot.py
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@@ -1,5 +1,6 @@
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#
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-# Copyright (C) 2019, 2020 Smithsonian Astrophysical Observatory
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+# Copyright (C) 2019, 2020, 2021
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+# Smithsonian Astrophysical Observatory
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#
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#
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# This program is free software; you can redistribute it and/or modify
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@@ -1113,7 +1114,7 @@ def test_plot_single(session):
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ax = fig.axes[0]
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- assert ax.get_geometry() == (1, 1, 1)
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+ assert ax.get_subplotspec().get_geometry() == (1, 1, 0, 0)
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assert ax.get_title() == ''
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assert ax.xaxis.get_label().get_text() == 'x'
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assert ax.yaxis.get_label().get_text() == 'y'
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@@ -1127,7 +1128,7 @@ def test_plot_single(session):
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ax = fig.axes[0]
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- assert ax.get_geometry() == (1, 1, 1)
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+ assert ax.get_subplotspec().get_geometry() == (1, 1, 0, 0)
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assert ax.get_title() == 'Model'
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assert ax.xaxis.get_label().get_text() == 'x'
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assert ax.yaxis.get_label().get_text() == 'y'
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@@ -1179,7 +1180,8 @@ def test_plot_multiple(session):
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'Data / Model']),
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1):
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- assert ax.get_geometry() == (2, 3, i)
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+ w = i - 1
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+ assert ax.get_subplotspec().get_geometry() == (2, 3, w, w)
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assert ax.get_title() == title
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assert ax.xaxis.get_label().get_text() == 'x'
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assert ax.yaxis.get_label().get_text() == ylabel
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@@ -1226,7 +1228,7 @@ def test_contour_single(session):
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ax = fig.axes[0]
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- assert ax.get_geometry() == (1, 1, 1)
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+ assert ax.get_subplotspec().get_geometry() == (1, 1, 0, 0)
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assert ax.get_title() == ''
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assert ax.xaxis.get_label().get_text() == 'x0'
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assert ax.yaxis.get_label().get_text() == 'x1'
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@@ -1240,7 +1242,7 @@ def test_contour_single(session):
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ax = fig.axes[0]
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- assert ax.get_geometry() == (1, 1, 1)
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+ assert ax.get_subplotspec().get_geometry() == (1, 1, 0, 0)
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assert ax.get_title() == 'Model'
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assert ax.xaxis.get_label().get_text() == 'x0'
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assert ax.yaxis.get_label().get_text() == 'x1'
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@@ -1287,7 +1289,8 @@ def test_contour_multiple(session):
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'Ratio of Data to Model']),
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1):
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- assert ax.get_geometry() == (2, 3, i)
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+ w = i - 1
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+ assert ax.get_subplotspec().get_geometry() == (2, 3, w, w)
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assert ax.get_title() == title
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assert ax.xaxis.get_label().get_text() == 'x0'
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assert ax.yaxis.get_label().get_text() == 'x1'
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@@ -1343,7 +1346,8 @@ def test_contour_xxx(plotfunc, title, pc
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['', 'Residuals']),
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1):
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- assert ax.get_geometry() == (2, 1, i)
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+ w = i - 1
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+ assert ax.get_subplotspec().get_geometry() == (2, 1, w, w)
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assert ax.get_title() == title
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assert ax.xaxis.get_label().get_text() == 'x0'
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assert ax.yaxis.get_label().get_text() == 'x1'
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@@ -1352,7 +1356,7 @@ def test_contour_xxx(plotfunc, title, pc
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assert len(fig.axes) == 1
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ax = fig.axes[0]
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- assert ax.get_geometry() == (1, 1, 1)
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+ assert ax.get_subplotspec().get_geometry() == (1, 1, 0, 0)
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assert ax.get_title() == title
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assert ax.xaxis.get_label().get_text() == 'x0'
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assert ax.yaxis.get_label().get_text() == 'x1'
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