Benjamin Greiner
de47efe118
* This release of Sherpa includes various enhancements,
documentation updates, bug fixes, and infrastructure changes.
## enhancements:
* add calc_model and calc_source functions to return an evaluated
model/source array
* added wstat to plot_pvalue for the likelihood ratio test
* changed XSpec interface to use FunctionUtility C++ API instead
of XSFortran API
* improved support for PHA data starting at channel 0 and
handling of STAT_ERR and SYS_ERR PHA columns which are set to 0
* improved guess for complex models
* improved filtering handling
* several updates to enhance plotting capabilities and layout
## documentation changes:
* added paper citations to front page of Sherpa Read the Docs
documentation
* cleaned up various typos and URL references
* added examples such as use of set_x/y_label
## infrastructure and testing:
* improved test coverage
* many updates to CI
* drop support for Python 3.9 and numpy <1.24
* initial/experimental support for Python 3.12
## bug fixes:
* fixed an issue with plotting 1D data with asymmetric errs after
filter
* include the default identifier in save_all output if it has
been changed
- Drop numpy2.patch
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-sherpa?expand=0&rev=46
129 lines
4.5 KiB
RPMSpec
129 lines
4.5 KiB
RPMSpec
#
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# spec file for package python-sherpa
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#
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# Copyright (c) 2024 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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Name: python-sherpa
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Version: 4.17.0
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Release: 0
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Summary: Modeling and fitting package for scientific data analysis
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License: GPL-3.0-only
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URL: https://github.com/sherpa/sherpa/
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Source0: https://github.com/sherpa/sherpa/archive/%{version}.tar.gz#/sherpa-%{version}.tar.gz
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Source1: https://github.com/sherpa/sherpa-test-data/archive/refs/tags/%{version}.tar.gz#/sherpa-test-data-%{version}.tar.gz
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# PATCH-FIX-UPSTREAM sherpa-pr2188-np2docstrings.patch gh#sherpa/sherpa#2188
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Patch0: https://github.com/sherpa/sherpa/pull/2188.patch#/sherpa-pr2188-np2docstrings.patch
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# PATCH-FIX-OPENSUSE sherpa-suse-libdir.patch -- UPSTREAM struggles with library paths, see e.g. gh#sherpa/sherpa#2159 code@bnavigator.de
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Patch1: sherpa-suse-libdir.patch
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BuildRequires: %{python_module devel >= 3.9}
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BuildRequires: %{python_module numpy-devel}
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BuildRequires: %{python_module pip}
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BuildRequires: %{python_module setuptools >= 64}
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BuildRequires: %{python_module tomli if %python-base < 3.11}
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BuildRequires: %{python_module wheel}
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BuildRequires: bison
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BuildRequires: fdupes
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BuildRequires: fftw3-devel
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BuildRequires: flex
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BuildRequires: gcc-c++
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BuildRequires: python-rpm-macros
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BuildRequires: wcslib-devel
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Requires: python-numpy
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Requires(post): update-alternatives
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Requires(postun): update-alternatives
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ExcludeArch: %{ix86} %{arm}
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# SECTION test requirements
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BuildRequires: %{python_module pytest >= 8}
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# doctestplus tests don’t look ready gh#sherpa/sherpa#1719
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# BuildRequires: %%{python_module pytest-doctestplus}
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BuildRequires: %{python_module pytest-xdist}
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BuildRequires: %{python_module pytest-xvfb}
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# Highly recommended by upstream when building from source
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BuildRequires: %{python_module astropy}
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BuildRequires: %{python_module matplotlib}
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# /SECTION
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%python_subpackages
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%description
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Sherpa is the CIAO modeling and fitting application. It enables the
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user to construct models from definitions and fit those models to
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data, using a variety of statistics and optimization methods.
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%prep
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%autosetup -p1 -n sherpa-%{version} -a1
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sed -i -e 's|@_LIB@|%{_lib}|' setup.cfg helpers/sherpa_config.py
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rm -r extern/fftw-*
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# Remove shebangs
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sed -i "1{/\\/usr\\/bin\\/env python/d}" \
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sherpa/optmethods/ncoresde.py \
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sherpa/optmethods/ncoresnm.py \
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sherpa/optmethods/opt.py \
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sherpa/utils/akima.py
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%build
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cp -r extern extern0
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%{python_expand # rebuild and install extern/ into build/ for every wheel
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%$python_pyproject_wheel
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rm -r extern
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cp -r extern0 extern
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}
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%install
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%pyproject_install
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%python_clone -a %{buildroot}%{_bindir}/sherpa_test
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%python_clone -a %{buildroot}%{_bindir}/sherpa_smoke
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%python_expand %fdupes %{buildroot}%{$python_sitearch}
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%check
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# avoid conftest import mismatch
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mv sherpa sherpa_temp
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export PYTHONPATH=$PWD/sherpa-test-data-%{version}
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donttest="test_Griewank"
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# precision issues
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%ifnarch x86_64
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donttest+=" or (test_regproj and sherpa.plot.dummy_backend)"
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donttest+=" or (test_fit_single and Chi2XspecVar)"
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%endif
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# gh#sherpa/sherpa#1923
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donttest+=" or test_integrate1d_basic_epsabs"
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# flaky
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donttest+=" or test_scaling_staterr"
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donttest+=" or (test_Shekel7 and montecarlo)"
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# docstring mismatches
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python313_donttest=" or test_show_fit or test_modify_doctring or test_modelwrapper_str_with_doc"
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%pytest_arch --pyargs sherpa -n auto --dist=loadgroup -r fE -k "not ($donttest ${$python_donttest})"
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%post
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%python_install_alternative sherpa_smoke
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%python_install_alternative sherpa_test
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%postun
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%python_uninstall_alternative sherpa_smoke
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%python_uninstall_alternative sherpa_test
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%files %{python_files}
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%doc README.md
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%license LICENSE
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%python_alternative %{_bindir}/sherpa_test
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%python_alternative %{_bindir}/sherpa_smoke
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%{python_sitearch}/sherpa
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%{python_sitearch}/sherpa-%{version}.dist-info
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%{python_sitearch}/stk.so
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%{python_sitearch}/group.so
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%changelog
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