Accepting request 1152304 from home:bnavigator:branches:devel:languages:python:numeric

- Update to 2024.2.0
  * This release brings size information to the text repr, changes
    to the accepted frequency strings, and various bug fixes.
  ## New Features
  * Added a simple nbytes representation in DataArrays and Dataset
    repr. (GH8690, PR8702). By Etienne Schalk.
  * Allow negative frequency strings (e.g. "-1YE"). These strings
    are for example used in date_range(), and cftime_range()
    (PR8651). By Mathias Hauser.
  * Add NamedArray.expand_dims(), NamedArray.permute_dims() and
    NamedArray.broadcast_to() (PR8380) By Anderson Banihirwe.
  * Xarray now defers to flox’s heuristics to set the default
    method for groupby problems. This only applies to flox>=0.9. By
    Deepak Cherian.
  * All quantile methods (e.g. DataArray.quantile()) now use
    numbagg for the calculation of nanquantiles (i.e., skipna=True)
    if it is installed. This is currently limited to the linear
    interpolation method (method=’linear’). (GH7377, PR8684) By
    Marco Wolsza.
  ## Breaking changes
  * infer_freq() always returns the frequency strings as defined in
    pandas 2.2 (GH8612, PR8627). By Mathias Hauser.
  * Deprecations
  * The dt.weekday_name parameter wasn’t functional on modern
    pandas versions and has been removed. (GH8610, PR8664) By Sam
    Coleman.
  ## Bug fixes
  * Fixed a regression that prevented multi-index level coordinates
    being serialized after resetting or dropping the multi-index
    (GH8628, PR8672). By Benoit Bovy.

OBS-URL: https://build.opensuse.org/request/show/1152304
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-xarray?expand=0&rev=90

_multibuild

@@ -0,0 +1,3 @@
+<multibuild>
+  <package>test</package>
+</multibuild>

python-xarray.changes

@@ -1,3 +1,108 @@
+-------------------------------------------------------------------
+Tue Feb 27 10:56:32 UTC 2024 - Ben Greiner <code@bnavigator.de>
+
+- Update to 2024.2.0
+  * This release brings size information to the text repr, changes
+    to the accepted frequency strings, and various bug fixes.
+  ## New Features
+  * Added a simple nbytes representation in DataArrays and Dataset
+    repr. (GH8690, PR8702). By Etienne Schalk.
+  * Allow negative frequency strings (e.g. "-1YE"). These strings
+    are for example used in date_range(), and cftime_range()
+    (PR8651). By Mathias Hauser.
+  * Add NamedArray.expand_dims(), NamedArray.permute_dims() and
+    NamedArray.broadcast_to() (PR8380) By Anderson Banihirwe.
+  * Xarray now defers to flox’s heuristics to set the default
+    method for groupby problems. This only applies to flox>=0.9. By
+    Deepak Cherian.
+  * All quantile methods (e.g. DataArray.quantile()) now use
+    numbagg for the calculation of nanquantiles (i.e., skipna=True)
+    if it is installed. This is currently limited to the linear
+    interpolation method (method=’linear’). (GH7377, PR8684) By
+    Marco Wolsza.
+  ## Breaking changes
+  * infer_freq() always returns the frequency strings as defined in
+    pandas 2.2 (GH8612, PR8627). By Mathias Hauser.
+  * Deprecations
+  * The dt.weekday_name parameter wasn’t functional on modern
+    pandas versions and has been removed. (GH8610, PR8664) By Sam
+    Coleman.
+  ## Bug fixes
+  * Fixed a regression that prevented multi-index level coordinates
+    being serialized after resetting or dropping the multi-index
+    (GH8628, PR8672). By Benoit Bovy.
+  * Fix bug with broadcasting when wrapping array API-compliant
+    classes. (GH8665, PR8669) By Tom Nicholas.
+  * Ensure DataArray.unstack() works when wrapping array
+    API-compliant classes. (GH8666, PR8668) By Tom Nicholas.
+  * Fix negative slicing of Zarr arrays without dask installed.
+    (GH8252) By Deepak Cherian.
+  * Preserve chunks when writing time-like variables to zarr by
+    enabling lazy CF encoding of time-like variables (GH7132,
+    GH8230, GH8432, PR8575). By Spencer Clark and Mattia Almansi.
+  * Preserve chunks when writing time-like variables to zarr by
+    enabling their lazy encoding (GH7132, GH8230, GH8432, PR8253,
+    PR8575; see also discussion in PR8253). By Spencer Clark and
+    Mattia Almansi.
+  * Raise an informative error if dtype encoding of time-like
+    variables would lead to integer overflow or unsafe conversion
+    from floating point to integer values (GH8542, PR8575). By
+    Spencer Clark.
+  * Raise an error when unstacking a MultiIndex that has duplicates
+    as this would lead to silent data loss (GH7104, PR8737). By
+    Mathias Hauser.
+- Release 2024.1.1
+  ## Breaking changes
+  * Following pandas, infer_freq() will return "YE", instead of "Y"
+    (formerly "A"). This is to be consistent with the deprecation
+    of the latter frequency string in pandas 2.2. This is a follow
+    up to PR8415 (GH8612, PR8642). By Mathias Hauser.
+  ## Deprecations
+  * Following pandas, the frequency string "Y" (formerly "A") is
+    deprecated in favor of "YE". These strings are used, for
+    example, in date_range(), cftime_range(), DataArray.resample(),
+    and Dataset.resample() among others (GH8612, PR8629). By
+    Mathias Hauser.
+- Release 2024.1.0
+  * This release brings support for weights in correlation and
+    covariance functions, a new DataArray.cumulative aggregation,
+    improvements to xr.map_blocks, an update to our minimum
+    dependencies, and various bugfixes.
+  ## New Features
+  * xr.cov() and xr.corr() now support using weights (GH8527,
+    PR7392). By Llorenç Lledó.
+  * Accept the compression arguments new in netCDF 1.6.0 in the
+    netCDF4 backend. See netCDF4 documentation for details. Note
+    that some new compression filters needs plugins to be installed
+    which may not be available in all netCDF distributions. By
+    Markel García-Díez. (GH6929, PR7551)
+  * Add DataArray.cumulative() & Dataset.cumulative() to compute
+    cumulative aggregations, such as sum, along a dimension — for
+    example da.cumulative('time').sum(). This is similar to pandas’
+    .expanding, and mostly equivalent to .cumsum methods, or to
+    DataArray.rolling() with a window length equal to the dimension
+    size. By Maximilian Roos. (PR8512)
+  * Decode/Encode netCDF4 enums and store the enum definition in
+    dataarrays’ dtype metadata. If multiple variables share the
+    same enum in netCDF4, each dataarray will have its own enum
+    definition in their respective dtype metadata. By Abel Aoun.
+    (GH8144, PR8147)
+  ## Deprecations
+  * The squeeze kwarg to GroupBy is now deprecated. (GH2157,
+    PR8507) By Deepak Cherian.
+  ## Bug fixes
+  * Support non-string hashable dimensions in xarray.DataArray
+    (GH8546, PR8559). By Michael Niklas.
+  * Reverse index output of bottleneck’s rolling
+    move_argmax/move_argmin functions (GH8541, PR8552). By Kai
+    Mühlbauer.
+  * Vendor SerializableLock from dask and use as default lock for
+    netcdf4 backends (GH8442, PR8571). By Kai Mühlbauer.
+  * Add tests and fixes for empty CFTimeIndex, including broken
+    html repr (GH7298, PR8600). By Mathias Hauser.
+- Create subpackages for the python [extras], test dependencies
+  with _multibuild
+
 -------------------------------------------------------------------
 Thu Jan  4 11:16:58 UTC 2024 - Sebastian Wagner <sebix@sebix.at>
 

python-xarray.spec

@@ -16,9 +16,18 @@
 #
 
 
+%global flavor @BUILD_FLAVOR@%{nil}
+%if "%{flavor}" == "test"
+%bcond_without test
+%define psuffix -test
+%else
+%bcond_with test
+%define psuffix %{nil}
+%endif
+
 %{?sle15_python_module_pythons}
-Name:           python-xarray
+Name:           python-xarray%{psuffix}
-Version:        2023.12.0
+Version:        2024.2.0
 Release:        0
 Summary:        N-D labeled arrays and datasets in Python
 License:        Apache-2.0
@@ -28,58 +37,20 @@ Source:         https://files.pythonhosted.org/packages/source/x/xarray/xarray-%
 # fix xr.tutorial.open_dataset to work with the preloaded cache.
 Patch0:         local_dataset.patch
 BuildRequires:  %{python_module base >= 3.9}
-BuildRequires:  %{python_module numpy-devel >= 1.22}
-BuildRequires:  %{python_module packaging >= 21.3}
-BuildRequires:  %{python_module pandas >= 1.4}
 BuildRequires:  %{python_module pip}
 BuildRequires:  %{python_module setuptools_scm}
 BuildRequires:  %{python_module setuptools}
 BuildRequires:  %{python_module wheel}
 BuildRequires:  fdupes
 BuildRequires:  python-rpm-macros
-Requires:       python-numpy >= 1.22
+Requires:       python-numpy >= 1.23
-Requires:       python-packaging >= 21.3
+Requires:       python-packaging >= 22
-Requires:       python-pandas >= 1.4
+Requires:       python-pandas >= 1.5
-Provides:       python-xray = %{version}
+Obsoletes:      python-xray <= 0.7
-Obsoletes:      python-xray < %{version}
 BuildArch:      noarch
-# SECTION extras accel
+%if %{with test}
-Recommends:     python-scipy
+BuildRequires:  %{python_module xarray-complete = %{version}}
-Recommends:     python-bottleneck
+%endif
-Recommends:     python-flox
-Recommends:     python-numbagg
-# /SECTION
-# SECTION extras parallalel
-Suggests:       python-dask-complete
-# /SECTION
-# SECTION extras viz
-Suggests:       python-matplotlib
-Suggests:       python-seaborn
-Suggests:       python-nc-time-axis
-#/SECTION
-# SECTION extras io
-Suggests:       python-netCDF4
-Suggests:       python-h5netcdf
-Suggests:       (python-pydap if python-base < 3.10)
-Suggests:       python-zarr
-Suggests:       python-fsspec
-Suggests:       python-cftime
-Suggests:       python-rasterio
-Suggests:       python-cfgrib
-Suggests:       python-pooch
-#/SECTION
-# SECTION tests
-BuildRequires:  %{python_module Bottleneck}
-BuildRequires:  %{python_module dask-dataframe}
-BuildRequires:  %{python_module dask-diagnostics}
-BuildRequires:  %{python_module h5netcdf}
-BuildRequires:  %{python_module matplotlib}
-BuildRequires:  %{python_module netCDF4}
-BuildRequires:  %{python_module pooch}
-BuildRequires:  %{python_module pytest-xdist}
-BuildRequires:  %{python_module pytest}
-BuildRequires:  %{python_module scipy}
-BuildRequires:  %{python_module zarr}
 # /SECTION
 %python_subpackages
 
@@ -92,18 +63,113 @@ rather than the tabular data that pandas uses.
 The Common Data Model for self-describing scientific data is used.
 The dataset is an in-memory representation of a netCDF file.
 
+%package accel
+# for minimum versions, check ci/requirements/min-all-deps.yml
+Summary:        The python xarray[accel] extra
+Requires:       python-Bottleneck >= 1.3
+Requires:       python-opt-einsum
+Requires:       python-scipy
+Requires:       python-xarray = %{version}
+# not available yet
+Recommends:     python-flox >= 0.7
+Recommends:     python-numbagg
+
+%description accel
+The [accel] extra for xarray, N-D labeled arrays and datasets in Python
+Except flox and numbagg, because they are not packaged yet.
+Use `pip-%{python_bin_suffix} --user install flox numbagg` to install from PyPI, if needed.
+
+%package complete
+Summary:        The python xarray[complete] extra
+Requires:       python-xarray = %{version}
+Requires:       python-xarray-accel = %{version}
+Requires:       python-xarray-dev = %{version}
+Requires:       python-xarray-io = %{version}
+Requires:       python-xarray-parallel = %{version}
+Requires:       python-xarray-viz = %{version}
+
+%description complete
+The [complete] extra for xarray, N-D labeled arrays and datasets in Python
+
+%package dev
+Summary:        The python xarray[dev] extra
+Requires:       python-hypothesis
+Requires:       python-pytest
+Requires:       python-pytest-cov
+Requires:       python-pytest-env
+Requires:       python-pytest-timeout
+Requires:       python-pytest-xdist
+Requires:       python-ruff
+Requires:       python-xarray = %{version}
+Requires:       python-xarray-complete = %{version}
+# Not available and not really useful for us
+Recommends:     python-pre-commit
+
+%description dev
+The [dev] extra for xarray, N-D labeled arrays and datasets in Python
+Except pre-commit, Use `pip-%{python_bin_suffix} --user install pre-commit` to install, if needed.
+
+%package io
+Summary:        The python xarray[io] extra
+Requires:       python-cftime >= 1.6
+Requires:       python-fsspec
+Requires:       python-h5netcdf >= 1.1
+Requires:       python-netCDF4 >= 1.6
+Requires:       python-pooch
+Requires:       python-scipy >= 1.10
+Requires:       python-xarray = %{version}
+Requires:       python-zarr >= 2.13
+Requires:       (python-pydap >= 3.3 if python-base < 3.10)
+
+%description io
+The [io] extra for xarray, N-D labeled arrays and datasets in Python
+
+%package parallel
+Summary:        The python xarray[parallel] extra
+Requires:       python-dask-complete >= 2022.12
+Requires:       python-xarray = %{version}
+
+%description parallel
+The [parallel] extra for xarray, N-D labeled arrays and datasets in Python
+
+%package viz
+Summary:        The python xarray[viz] extra
+Requires:       python-matplotlib >= 3.6
+Requires:       python-seaborn >= 0.12
+Requires:       python-xarray = %{version}
+# Not available yet
+Recommends:     python-nc-time-axis
+
+%description viz
+The [viz] extra for xarray, N-D labeled arrays and datasets in Python
+
+Except nc-time-axis, because it's not packaged yet.
+Use `pip-%{python_bin_suffix} --user install nc-time-axis` to install from PyPI, if needed.
+
 %prep
 %autosetup -p1 -n xarray-%{version}
+%if "%{version}" == "2024.2.0"
+# gh#pydata/xarray#8768, remove this after the next update!
+rm -r xarray/tests/datatree
+%else
+echo "You failed to update the specfile"
+exit 1
+%endif
 
 chmod -x xarray/util/print_versions.py
 
 %build
+%if !%{with test}
 %pyproject_wheel
+%endif
 
 %install
+%if !%{with test}
 %pyproject_install
 %python_expand %fdupes %{buildroot}%{$python_sitelib}
+%endif
 
+%if %{with test}
 %check
 # obs file open race conditions?
 donttest="(test_open_mfdataset_manyfiles and (h5netcdf or netCDF4))"
@@ -117,12 +183,42 @@ if [ $(getconf LONG_BIT) -eq 32 ]; then
 fi
 # h5py was built without ROS3 support, can't use ros3 driver
 donttest="$donttest or TestH5NetCDFDataRos3Driver"
-%pytest -n auto -rsEf -k "not ($donttest)" xarray
+# NetCDF4 fails with these unsupported drivers
+donttest="$donttest or (TestNetCDF4 and test_compression_encoding and (szip or zstd or blosc_lz or blosc_zlib))"
 
+%pytest -n auto -rsEf -k "not ($donttest)" xarray
+%endif
+
+%if !%{with test}
 %files %{python_files}
 %doc README.md
 %license LICENSE licenses/
 %{python_sitelib}/xarray
 %{python_sitelib}/xarray-%{version}.dist-info
 
+%files %{python_files accel}
+%doc README.md
+%license LICENSE
+
+%files %{python_files complete}
+%doc README.md
+%license LICENSE
+
+%files %{python_files dev}
+%doc README.md
+%license LICENSE
+
+%files %{python_files io}
+%doc README.md
+%license LICENSE
+
+%files %{python_files parallel}
+%doc README.md
+%license LICENSE
+
+%files %{python_files viz}
+%doc README.md
+%license LICENSE
+%endif
+
 %changelog

xarray-2023.12.0.tar.gz

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:4565dbc890de47e278346c44d6b33bb07d3427383e077a7ca8ab6606196fd433
-size 3602114

xarray-2024.2.0.tar.gz

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a105f02791082c888ebe2622090beaff2e7b68571488d62fe6afdab35b4b717f
+size 3634288