Accepting request 849456 from network:cluster:staging

move from staging to devel repo OBS-URL: https://build.opensuse.org/request/show/849456 OBS-URL: https://build.opensuse.org/package/show/network:cluster/spack?expand=0&rev=1
2020-11-19 14:49:24 +00:00 · 2020-11-19 14:49:24 +00:00 · 0ecd3ddaef
commit 0ecd3ddaef
9 changed files with 459 additions and 0 deletions
--- a/.gitattributes
+++ b/.gitattributes
@ -0,0 +1,23 @@
+## Default LFS
+*.7z filter=lfs diff=lfs merge=lfs -text
+*.bsp filter=lfs diff=lfs merge=lfs -text
+*.bz2 filter=lfs diff=lfs merge=lfs -text
+*.gem filter=lfs diff=lfs merge=lfs -text
+*.gz filter=lfs diff=lfs merge=lfs -text
+*.jar filter=lfs diff=lfs merge=lfs -text
+*.lz filter=lfs diff=lfs merge=lfs -text
+*.lzma filter=lfs diff=lfs merge=lfs -text
+*.obscpio filter=lfs diff=lfs merge=lfs -text
+*.oxt filter=lfs diff=lfs merge=lfs -text
+*.pdf filter=lfs diff=lfs merge=lfs -text
+*.png filter=lfs diff=lfs merge=lfs -text
+*.rpm filter=lfs diff=lfs merge=lfs -text
+*.tbz filter=lfs diff=lfs merge=lfs -text
+*.tbz2 filter=lfs diff=lfs merge=lfs -text
+*.tgz filter=lfs diff=lfs merge=lfs -text
+*.ttf filter=lfs diff=lfs merge=lfs -text
+*.txz filter=lfs diff=lfs merge=lfs -text
+*.whl filter=lfs diff=lfs merge=lfs -text
+*.xz filter=lfs diff=lfs merge=lfs -text
+*.zip filter=lfs diff=lfs merge=lfs -text
+*.zst filter=lfs diff=lfs merge=lfs -text
--- a/.gitignore
+++ b/.gitignore
@ -0,0 +1 @@
+.osc
--- a/Make-spack-paths-compliant-to-distro-installation.patch
+++ b/Make-spack-paths-compliant-to-distro-installation.patch
@ -0,0 +1,69 @@
+From: Egbert Eich <eich@suse.com>
+Date: Tue Sep 22 09:42:40 2020 +0200
+Subject: Make spack paths compliant to distro installation
+Patch-mainline: Not yet
+Git-commit: 0e7934fd94b6f5ec2059b73d7b17b7e048d61b2d
+References: 
+
+Signed-off-by: Egbert Eich <eich@suse.com>
+---
+ etc/spack/defaults/config.yaml | 8 ++++----
+ etc/spack/defaults/repos.yaml  | 2 +-
+ lib/spack/spack/paths.py       | 2 +-
+ 3 files changed, 6 insertions(+), 6 deletions(-)
+diff --git a/etc/spack/defaults/config.yaml b/etc/spack/defaults/config.yaml
+index a572787..cbad1b7 100644
+--- a/etc/spack/defaults/config.yaml
+++ b/etc/spack/defaults/config.yaml
+@@ -21,7 +21,7 @@ config:
+ 
+   # Locations where templates should be found
+   template_dirs:
+-    - $spack/share/spack/templates
+    - /usr/share/spack/templates
+ 
+ 
+   # Default directory layout
+@@ -30,8 +30,8 @@ config:
+ 
+   # Locations where different types of modules should be installed.
+   module_roots:
+-    tcl:    $spack/share/spack/modules
+-    lmod:   $spack/share/spack/lmod
+    tcl:    /usr/share/spack/modules
+    lmod:   /usr/share/spack/lmod
+ 
+ 
+   # Temporary locations Spack can try to use for builds.
+@@ -67,7 +67,7 @@ config:
+ 
+   # Cache directory for already downloaded source tarballs and archived
+   # repositories. This can be purged with `spack clean --downloads`.
+-  source_cache: $spack/var/spack/cache
+  source_cache: /var/spack/cache
+ 
+ 
+   # Cache directory for miscellaneous files, like the package index.
+diff --git a/etc/spack/defaults/repos.yaml b/etc/spack/defaults/repos.yaml
+index f3e0065..2469194 100644
+--- a/etc/spack/defaults/repos.yaml
+++ b/etc/spack/defaults/repos.yaml
+@@ -11,4 +11,4 @@
+ #   ~/.spack/repos.yaml
+ # -------------------------------------------------------------------------
+ repos:
+-  - $spack/var/spack/repos/builtin
+  - /var/lib/spack/repos/builtin
+diff --git a/lib/spack/spack/paths.py b/lib/spack/spack/paths.py
+index e5541ef..bc8e49d 100644
+--- a/lib/spack/spack/paths.py
+++ b/lib/spack/spack/paths.py
+@@ -37,7 +37,7 @@
+ operating_system_path = os.path.join(module_path, 'operating_systems')
+ test_path             = os.path.join(module_path, "test")
+ hooks_path            = os.path.join(module_path, "hooks")
+-var_path              = os.path.join(prefix, "var", "spack")
+var_path              = os.path.join("/", "var", "lib", "spack")
+ repos_path            = os.path.join(var_path, "repos")
+ share_path            = os.path.join(prefix, "share", "spack")
+ 
--- a/README.SUSE
+++ b/README.SUSE
@ -0,0 +1,21 @@
+openSUSE/SUSE specific Settings =============================================
+
+The packages build by a regular user are stored in the home directory and so
+only available for this user.  When the packages should be available for all
+users on a system, the user who builds the packages, must be able to write to
+the global spack user directories under /usr/lib/spack/ Packages stored under
+this path are available for all user via lmod.
+
+To add a user to the group spack so that he can write to the global spack
+directory, execute (as root):
+
+ # usermod -a -G spack <user_login>
+
+and change the setting for 'install_tree:' to the global spack directory in the
+configuration '~/.spack/config.yaml' for this user.
+ 
+ 
+NOTE:
+
+As the recipes are contributed by the spack community and rely also on external
+packages, a signification part of the recipes may fail to create packages.
--- a/fix-tumbleweed-naming.patch
+++ b/fix-tumbleweed-naming.patch
@ -0,0 +1,28 @@
+From dce8997ce770ec420b2946936caf92760638d439 Mon Sep 17 00:00:00 2001
+From: Christian Goll <cgoll@suse.de>
+Date: Wed, 11 Nov 2020 20:29:55 +0100
+Subject: [PATCH] fix tumbleweed naming
+
+---
+ lib/spack/spack/operating_systems/linux_distro.py | 5 +++++
+ 1 file changed, 5 insertions(+)
+
+diff --git a/lib/spack/spack/operating_systems/linux_distro.py b/lib/spack/spack/operating_systems/linux_distro.py
+index a6608e6d3..dfa09b16e 100644
+--- a/lib/spack/spack/operating_systems/linux_distro.py
+++ b/lib/spack/spack/operating_systems/linux_distro.py
+@@ -33,6 +33,11 @@ def __init__(self):
+ 
+         if 'ubuntu' in distname:
+             version = '.'.join(version[0:2])
+        # openSUSE Tumbleweed is a rolling release which can change
+        # more than once in a week, so set version to tumbleweed
+        elif 'opensuse-tumbleweed' in distname:
+            distname = 'opensuse'
+            version = 'tumbleweed'
+         else:
+             version = version[0]
+ 
+-- 
+2.26.2
+
--- a/spack-0.15.4.tar.gz
+++ b/spack-0.15.4.tar.gz
@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ce195bc79956675d813cc7837840517135064dcbe211e797b7d171cd8810d31d
+size 4805201
--- a/10
+++ b/10
@ -0,0 +1,10 @@
+# These files are patches and not to be run directly
+addFilter("script-without-shebang")
+# These files are installed as part of the spack recipes
+# and shouldn't be in a devel package
+addFilter("devel-file-in-non-devel-package*")
+# No group any more
+addFilter("non-standard-group Unspecified")
+# Spurious self-applying patches from an upstream source.
+# These are part of recipes and not intended to run as scripts.
+addFilter("non-executable-script /var/lib/spack/repos.*")
--- a/spack.changes
+++ b/spack.changes
@ -0,0 +1,22 @@
+-------------------------------------------------------------------
+Mon Nov 16 14:42:32 UTC 2020 - Christian Goll <cgoll@suse.com>
+
+- added profile file for csh 
+- enabled projections 
+- updated README.SUSE
+
+-------------------------------------------------------------------
+Wed Nov 11 19:56:11 UTC 2020 - Christian Goll <cgoll@suse.com>
+
+- added patches to be more on the traditional file system hierarchy 
+  and avoid explicit version in tumbleweed.
+  * added file Make-spack-paths-compliant-to-distro-installation.patch
+  * added file fix-tumbleweed-naming.patch
+
+
+-------------------------------------------------------------------
+Fri Sep 11 07:50:30 UTC 2020 - Ana Guerrero Lopez <aguerrero@suse.com>
+
+- Initial release. Version 0.15.4 
+  * Make-spack-paths-compliant-to-distro-installation.patch
+    Make spack paths compliant to distro installation.
--- a/spack.spec
+++ b/spack.spec
@ -0,0 +1,282 @@
+#
+# spec file for package spack
+#
+# Copyright (c) 2020 SUSE LLC
+#
+# All modifications and additions to the file contributed by third parties
+# remain the property of their copyright owners, unless otherwise agreed
+# upon. The license for this file, and modifications and additions to the
+# file, is the same license as for the pristine package itself (unless the
+# license for the pristine package is not an Open Source License, in which
+# case the license is the MIT License). An "Open Source License" is a
+# license that conforms to the Open Source Definition (Version 1.9)
+# published by the Open Source Initiative.
+
+# Please submit bugfixes or comments via https://bugs.opensuse.org/
+#
+
+%define spack_dir  %_prefix/lib/spack/
+%define spack_group spack
+
+Name:           spack
+Version:        0.15.4
+Release:        0
+Summary:        Package manager for HPC systems
+License:        Apache-2.0 AND MIT AND Python-2.0 AND BSD-3-Clause   
+URL:            https://spack.io
+Source0:        https://github.com/spack/spack/archive/v%{version}.tar.gz#/spack-%{version}.tar.gz      
+Patch0:         Make-spack-paths-compliant-to-distro-installation.patch
+Patch1:         fix-tumbleweed-naming.patch
+BuildRequires:  polkit
+BuildRequires:  fdupes
+BuildRequires:  python-base
+BuildRequires:  lua-lmod
+Requires:       %{name}-recipes = %{version}
+Requires:       curl
+Requires:       lua-lmod
+Requires:       pattern() = devel_basis
+Requires:       polkit
+Requires:       gcc-fortran
+Requires:       gpg2
+Requires:       xz
+Requires:       bzip2
+Requires:       spack-recipes
+Recommends:     spack-recipes = %version
+BuildArch:      noarch
+%if  0%{?sle_version} <= 120500 && !0%{?is_opensuse} 
+%define __python3 python3
+%endif
+
+
+%description
+Spack is a configurable Python-based HPC package manager, automating
+the installation and fine-tuning of simulations and libraries.
+It operates on a wide variety of HPC platforms and enables users
+to build many code configurations. Software installed by Spack
+runs correctly regardless of environment, and file management
+is streamlined. Spack can install many variants of the same build
+using different compilers, options, and MPI implementations.
+
+This package provides a module file that must be loaded to use spack.
+
+
+%package recipes
+Summary:        Spack built-in package recipes
+Requires:       %{name} >= %version
+
+%description recipes
+Spack is a configurable Python-based HPC package manager, automating
+the installation and fine-tuning of simulations and libraries.
+It operates on a wide variety of HPC platforms and enables users
+to build many code configurations. Software installed by Spack
+runs correctly regardless of environment, and file management
+is streamlined. Spack can install many variants of the same build
+using different compilers, options, and MPI implementations.
+
+This package contains the built-in package recipes. 
+
+
+%prep
+%setup -q
+%autopatch -p1
+
+%build
+# Nothing to build
+
+
+%install
+
+# Fix some rpmlint warnings
+## Remove files not required to run spack
+rm -rf lib/spack/spack/test
+rm -rf share/spack/qa
+rm -rf var/spack/repos/builtin.mock  var/spack/gpg.mock var/spack/mock_configs
+rm -rf lib/spack/external/ruamel/yaml/.ruamel
+find . -type f -name .gitignore -delete
+find . -type f -name .nojekyll -delete
+rm -f lib/spack/docs/_spack_root
+ln -sf ../.. lib/spack/docs/_spack_root
+## No need for the standalone scripts
+rm -f lib/spack/external/macholib/macho_*.py
+## Fix shebangs  
+sed -i 's@#!/bin/env sh@#!/bin/bash@' var/spack/repos/builtin/packages/beast-tracer/tracer
+sed -i 's@#!/usr/bin/env bash@#!/bin/bash@' share/spack/docker/package-index/split.sh
+sed -i 's@#! /usr/bin/env bash@ #!/bin/bash@' share/spack/docker/entrypoint.bash
+
+mkdir -p %{buildroot}%{spack_dir}
+mkdir -p %{buildroot}%{spack_dir}/opt
+mkdir -p %{buildroot}%{spack_dir}/bin
+mkdir -p %{buildroot}%{_datarootdir}/spack
+mkdir -p %{buildroot}%{_datarootdir}/spack/modules
+mkdir -p %{buildroot}%{_localstatedir}/lib/spack
+mkdir -p %{buildroot}%{_localstatedir}/lib/spack/junit-report
+mkdir -p %{buildroot}%{_localstatedir}/cache/spack
+mkdir -p %{buildroot}%{_sysconfdir}/skel/.spack/
+mkdir -p %{buildroot}/%{_bindir}
+ln -sf %{buildroot}/%{_localstatedir}/cache/spack %{buildroot}%{_localstatedir}/lib/spack/cache
+
+# Copy files to corresponding paths
+cp -r etc lib %{buildroot}%{spack_dir}
+cp -r share/spack/* %{buildroot}%{_datarootdir}/spack
+cp -r var/spack/* %{buildroot}%{_localstatedir}/lib/spack
+cp -r bin/sbang %{buildroot}/%{_bindir}
+cp -r bin/spack* %{buildroot}%{spack_dir}/bin
+cp etc/spack/defaults/config.yaml %{buildroot}%{_sysconfdir}/skel/.spack/
+
+sed -i 's@\(\sinstall_tree:\).*@\1 ~/spack/packages@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
+sed -i 's@\(\ssource_cache:\).*@\1 /var/tmp/$user/spack-cache@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
+sed -i 's@\(\stcl:\).*@\1 ~/spack/modules@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
+sed -i 's@\(\slmod:\).*@\1 ~/spack/lmod@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
+
+
+# create spack scripts
+echo -e '#!/bin/bash\n\nexec %{spack_dir}bin/$(basename $0) "${1+$@}"' > \
+     %{buildroot}%{_bindir}/spack
+chmod 0755 %{buildroot}%{_bindir}/spack
+ln -s spack %{buildroot}%{_bindir}/spack-python
+ln -s %{_bindir}/sbang %{buildroot}%{spack_dir}/bin/sbang
+
+# compile python files for python3
+%py_compile .
+
+# make shell scripts executeable
+find %{buildroot}%{_localstatedir}/lib/spack/ -type f -name \*.sh  -exec chmod 755 {} \;
+
+# Create /etc/spack/compilers.yaml
+mkdir -p %{buildroot}%{spack_dir}/etc/spack/
+cat >  %{buildroot}%{spack_dir}/etc/spack/compilers.yaml <<EOF
+compilers:
+- compiler:
+    spec: gcc@GCC_FULL_VERSION
+    paths:
+      cc: /usr/bin/gcc-GCC_VERSION
+      cxx: /usr/bin/g++-GCC_VERSION
+      f77: /usr/bin/gfortran-GCC_VERSION
+      fc: /usr/bin/gfortran-GCC_VERSION
+    flags: {}
+    operating_system: SUSE_VERSION
+    target: HOSTTYPE
+    modules: []
+    environment:
+      unset: []
+    extra_rpaths: []
+EOF
+
+# Create /etc/profile.d/spack.sh
+# This file properly sets MODULEPATH so lua-lmod can find the modules created by spack
+mkdir -p %{buildroot}/%{_sysconfdir}/profile.d
+cat > %{buildroot}/%{_sysconfdir}/profile.d/spack.sh <<EOF
+source /etc/os-release
+if [ "\${ID}" == "opensuse-tumbleweed" ] ; then 
+  SPACK_NAME="\${ID/-/}"
+else
+  SPACK_NAME="\${ID/-/_}\${VERSION_ID/.*/}"
+fi
+export SPACK_ROOT=%{spack_dir}
+export MODULEPATH=~/spack/lmod/linux-\${SPACK_NAME}-\${CPU}:%{_prefix}/share/spack/lmod/linux-\${SPACK_NAME}-\${CPU}:\${MODULEPATH}
+# copy local configuration, if its not there
+if [ ! -e ~/.spack/config.yaml ] ; then
+  # test if user is in spack group by touching database
+  if ! touch %{spack_dir}/.spack-db &> /dev/null ; then
+    test -e ~/.spack || mkdir -p ~/.spack
+    [ -e ~/.spack/config.yaml ] || \
+     cp -r %{_sysconfdir}/skel/.spack/config.yaml ~/.spack/
+  fi
+fi
+EOF
+# Same for csh
+cat > %{buildroot}/%{_sysconfdir}/profile.d/spack.csh <<EOF
+# get ID
+eval \`awk '/^ID=/ {sub("-","_"); printf("set %%s",\$0);}' /etc/os-release\`
+# get VERSION_ID
+eval \`awk '/^VERSION_ID=/ {sub("\\\\.[0-9]",""); printf("set %%s",\$0);}' /etc/os-release\`
+if ( \$ID == "opensuse_tumbleweed" ) then
+  eval \`awk '/^ID=/ {sub("-",""); printf("set %%s",\$0);}' /etc/os-release\`
+  set SPACK_NAME=\$ID
+else  
+  set SPACK_NAME="\${ID}\${VERSION_ID}"
+endif 
+set SPACK_ROOT="%{spack_dir}"
+set MODULEPATH="~/spack/lmod/linux-\${SPACK_NAME}-\${CPU}:%{_prefix}/share/spack/lmod/linux-\${SPACK_NAME}-\${CPU}:\${MODULEPATH}"
+if ( ! -e ~/.spack/config.yaml )  then
+  # test if user is in spack group by touching database
+  touch %{spack_dir}/.spack-db  >& /dev/null
+  if ( \$? == 1  ) then
+    test -e ~/.spack || mkdir -p ~/.spack
+    test -e ~/.spack/config.yaml  || \
+     cp -r %{_sysconfdir}/skel/.spack/config.yaml ~/.spack/
+  endif
+endif
+
+EOF
+# Create modules.yaml file, so that hierarchy module files are created
+cat >  %{buildroot}%{spack_dir}/etc/spack/modules.yaml <<EOF
+modules:
+  enable:
+    - lmod
+  lmod:
+    core_compilers:
+      - 'gcc@GCC_FULL_VERSION'
+    projections:
+      all: '{compiler.name}-{compiler.version}/{name}/{version}'
+      ^mpi: '{compiler.name}-{compiler.version}/{^mpi.name}-{^mpi.version}/{name}/{version}'
+EOF
+
+# Fix link to not point into buildroot
+rm -f %{buildroot}%{_localstatedir}/lib/spack/cache
+ln -sf %{_localstatedir}/cache/spack %{buildroot}%{_localstatedir}/lib/spack/cache
+%fdupes %{buildroot}%{spack_dir}
+%fdupes %{buildroot}%{_datarootdir}/spack
+%fdupes %{buildroot}%{_localstatedir}/lib/spack
+
+%pre
+getent group %spack_group >/dev/null || groupadd -r %spack_group
+
+
+%post
+# Replace /etc/spack/compilers.yaml
+export GCC_VERSION=`gcc -dumpversion`
+export GCC_FULL_VERSION=`gcc -dumpfullversion`
+
+sed -i "s@GCC_FULL_VERSION@$GCC_FULL_VERSION@" %{spack_dir}/etc/spack/compilers.yaml
+sed -i "s@GCC_FULL_VERSION@$GCC_FULL_VERSION@" %{spack_dir}/etc/spack/modules.yaml
+sed -i "s@GCC_VERSION@$GCC_VERSION@" %{spack_dir}/etc/spack/compilers.yaml
+if [ -e /etc/os-release ] ;  then
+  source /etc/os-release
+  if [ "${ID}" == "opensuse-tumbleweed" ] ; then 
+    export SPACK_NAME="${ID/-/}"
+  else
+    export SPACK_NAME="${ID/-/_}${VERSION_ID/.*/}"
+  fi
+  sed -i "s@SUSE_VERSION@$SPACK_NAME@" %{spack_dir}/etc/spack/compilers.yaml
+  sed -i "s@SUSE_VERSION@$SPACK_NAME@g" /etc/profile.d/spack.sh
+fi
+sed -i "s@HOSTTYPE@$HOSTTYPE@" %{spack_dir}/etc/spack/compilers.yaml
+
+%files
+%license COPYRIGHT LICENSE-APACHE LICENSE-MIT
+%doc CHANGELOG.md NOTICE README.md
+%{_bindir}/*
+%attr(0775, root, spack) %{_localstatedir}/lib/spack/junit-report
+%attr(0775, root, spack) %{spack_dir}/opt
+%attr(0775, root, spack) %{_localstatedir}/cache/spack
+%attr(0775, root, spack) %{_datarootdir}/spack/modules
+%{_prefix}/lib/spack
+%{_localstatedir}/cache/spack
+%{_localstatedir}/lib/spack
+%{_datarootdir}/spack
+%config %{_sysconfdir}/profile.d/spack.sh
+%config %{_sysconfdir}/profile.d/spack.csh
+%dir %{_sysconfdir}/skel/.spack
+%config %{_sysconfdir}/skel/.spack/config.yaml
+# repos directory is installed in -recipes
+%exclude %{_localstatedir}/lib/spack/repos
+
+
+%files recipes
+%license COPYRIGHT LICENSE-APACHE LICENSE-MIT
+%doc CHANGELOG.md NOTICE README.md
+%{_localstatedir}/lib/spack/repos
+
+
+%changelog