Christian Goll
0fa92c75ff
- added tar and make as requirement OBS-URL: https://build.opensuse.org/request/show/910511 OBS-URL: https://build.opensuse.org/package/show/network:cluster/spack?expand=0&rev=29
446 lines
16 KiB
RPMSpec
446 lines
16 KiB
RPMSpec
#
|
|
# spec file for package spack
|
|
#
|
|
# Copyright (c) 2021 SUSE LLC
|
|
#
|
|
# All modifications and additions to the file contributed by third parties
|
|
# remain the property of their copyright owners, unless otherwise agreed
|
|
# upon. The license for this file, and modifications and additions to the
|
|
# file, is the same license as for the pristine package itself (unless the
|
|
# license for the pristine package is not an Open Source License, in which
|
|
# case the license is the MIT License). An "Open Source License" is a
|
|
# license that conforms to the Open Source Definition (Version 1.9)
|
|
# published by the Open Source Initiative.
|
|
|
|
# Please submit bugfixes or comments via https://bugs.opensuse.org/
|
|
#
|
|
|
|
|
|
%global flavor @BUILD_FLAVOR@%{?nil}
|
|
%if "%{flavor}" == "doc"
|
|
%bcond_without doc
|
|
%endif
|
|
|
|
%if %{with doc} && (0%{?sle_version} > 0) && (150200 >= 0%{?sle_version})
|
|
ExclusiveArch: do_not_build
|
|
%endif
|
|
|
|
%define spack_dir %_prefix/lib/spack/
|
|
%define spack_group spack
|
|
# These packages are found and can be used by spack, /etc/spack/packages-yaml
|
|
# needs to be updated when one of these packages is updated or uninstalled.
|
|
# Distinguish between packages we recommend and packages which
|
|
%define spack_trigger_recommended autoconf bash bison bzip2 cmake-full ccache cpio diffutils findutils flex gcc gcc-c++ gcc-fortran git-lfs make m4 ncurses-devel libtool openssl perl-base pkgconf pkgconf-pkg-config python3-basetar info xz
|
|
# packages recognized by spack, but not recommended
|
|
%define spack_trigger_packages ghostscript go fish fzf hugo java-11-openjdk-devel java-14-openjdk-devel java-15-openjdk-devel java-16-openjdk-devel java-1_8_0-openjdk-devel ruby openmpi1-devel openmpi2-devel openmpi3-devel openmpi4-devel openmpi1-gnu-hpc-devel openmpi2-gnu-hpc-devel openmpi3-gnu-hpc-devel openmpi4-gnu-hpc-devel mvapich2-devel mpich-devel gcc7 gcc8 gcc9 gcc10 gcc11 gcc7-c++ gcc8-c++ gcc9-c++ gcc10-c++ gcc11-c++ gcc7-fortran gcc8-fortran gcc9-fortran gcc10-fortran gcc11-fortran
|
|
# non oss packages
|
|
%define spack_trigger_external cuda-nvcc
|
|
Name: spack
|
|
Version: 0.16.2
|
|
Release: 0
|
|
Summary: Package manager for HPC systems
|
|
License: Apache-2.0 AND MIT AND Python-2.0 AND BSD-3-Clause
|
|
URL: https://spack.io
|
|
Source0: https://github.com/spack/spack/archive/v%{version}.tar.gz#/spack-%{version}.tar.gz
|
|
Source1: README.SUSE
|
|
Source2: spack-rpmlintrc
|
|
Source3: run-find-external.sh
|
|
Source4: https://en.opensuse.org/index.php?title=Spack&action=raw&ref=157522#/README-oo-wiki
|
|
Patch0: Make-spack-paths-compliant-to-distro-installation.patch
|
|
Patch1: fix-tumbleweed-naming.patch
|
|
Patch2: Adapt-shell-scripts-that-set-up-the-environment-for-different-shells.patch
|
|
Patch3: added-dockerfile-for-opensuse-leap-15.patch
|
|
Patch4: added-target-and-os-calls-to-output-of-spack-spec-co.patch
|
|
Patch5: Fix-documentation-so-that-parser-doesn-t-stumble.patch
|
|
Patch6: Fix-error-during-documentation-build-due-to-recursive-module-inclusion.patch
|
|
Patch7: basic-exclude-pattern-for-external-find.patch
|
|
# upstream patch removes also problemtatic binaries
|
|
#Patch4: spack-test-15702.patch
|
|
%if %{without doc}
|
|
BuildRequires: fdupes
|
|
BuildRequires: lua-lmod
|
|
BuildRequires: polkit
|
|
BuildRequires: python-base
|
|
BuildRequires: python3-urllib3
|
|
BuildRequires: sudo
|
|
Requires: %{name}-recipes = %{version}
|
|
Requires: bzip2
|
|
Requires: curl
|
|
Requires: gcc-c++
|
|
Requires: gcc-fortran
|
|
Requires: gpg2
|
|
Requires: libbz2-devel
|
|
Requires: lua-lmod
|
|
Requires: make
|
|
Requires: patch
|
|
Requires: polkit
|
|
Requires: sudo
|
|
Requires: tar
|
|
Requires: xz
|
|
Recommends: %spack_trigger_recommended
|
|
Recommends: spack-recipes = %version
|
|
%else
|
|
BuildRequires: %{python_module Sphinx >= 1.8}
|
|
BuildRequires: %{python_module sphinxcontrib-programoutput}
|
|
BuildRequires: git
|
|
BuildRequires: makeinfo
|
|
BuildRequires: spack
|
|
# html
|
|
BuildRequires: graphviz
|
|
# info
|
|
BuildRequires: graphviz-gnome
|
|
## pdf
|
|
# BuildRequires: python3-Sphinx-latex
|
|
Requires: spack
|
|
%endif
|
|
BuildArch: noarch
|
|
%if 0%{?sle_version} <= 120500 && !0%{?is_opensuse}
|
|
%define __python3 python3
|
|
%endif
|
|
|
|
%description
|
|
Spack is a configurable Python-based HPC package manager, automating
|
|
the installation and fine-tuning of simulations and libraries.
|
|
It operates on a wide variety of HPC platforms and enables users
|
|
to build many code configurations. Software installed by Spack
|
|
runs correctly regardless of environment, and file management
|
|
is streamlined. Spack can install many variants of the same build
|
|
using different compilers, options, and MPI implementations.
|
|
|
|
This package provides a module file that must be loaded to use spack.
|
|
|
|
%package recipes
|
|
Summary: Spack built-in package recipes
|
|
Requires: %{name} >= %version
|
|
|
|
%description recipes
|
|
Spack is a configurable Python-based HPC package manager, automating
|
|
the installation and fine-tuning of simulations and libraries.
|
|
It operates on a wide variety of HPC platforms and enables users
|
|
to build many code configurations. Software installed by Spack
|
|
runs correctly regardless of environment, and file management
|
|
is streamlined. Spack can install many variants of the same build
|
|
using different compilers, options, and MPI implementations.
|
|
|
|
This package contains the built-in package recipes.
|
|
|
|
%package man
|
|
Summary: Man Page for Spack - Package manager for HPC systems
|
|
Requires: man
|
|
|
|
%description man
|
|
Spack is a configurable Python-based HPC package manager, automating
|
|
the installation and fine-tuning of simulations and libraries.
|
|
It operates on a wide variety of HPC platforms and enables users
|
|
to build many code configurations. Software installed by Spack
|
|
runs correctly regardless of environment, and file management
|
|
is streamlined. Spack can install many variants of the same build
|
|
using different compilers, options, and MPI implementations.
|
|
|
|
This package contains the man page.
|
|
|
|
%package info
|
|
Summary: Info Page for Spack - Package manager for HPC systems
|
|
Requires: info
|
|
|
|
%description info
|
|
Spack is a configurable Python-based HPC package manager, automating
|
|
the installation and fine-tuning of simulations and libraries.
|
|
It operates on a wide variety of HPC platforms and enables users
|
|
to build many code configurations. Software installed by Spack
|
|
runs correctly regardless of environment, and file management
|
|
is streamlined. Spack can install many variants of the same build
|
|
using different compilers, options, and MPI implementations.
|
|
|
|
This package contains the info page.
|
|
|
|
%prep
|
|
%setup -q
|
|
%autopatch -p1
|
|
%if %{without doc}
|
|
|
|
# set SPACK_ROOT
|
|
for i in share/spack/setup-env.*; do
|
|
sed -i -e "s;@@_prefix@@;%_prefix;g" $i
|
|
done
|
|
%endif
|
|
|
|
%build
|
|
# Nothing to build
|
|
%if %{with doc}
|
|
cd lib/spack/docs
|
|
# Causes issues building texinfo as a suitable image cannot be found
|
|
grep -rl ":target:" | xargs sed -i -e "/:target:/s/^/#/" -e "/figure::/s/^/#/"
|
|
# Fix path to var - we install this to the 'real' /var
|
|
grep -rl "\$SPACK_ROOT/var" | xargs sed -i -e "s@\(.*\)\$SPACK_ROOT/var\(/spack.*\)@\1/var/lib\2@g"
|
|
# spack cannot run without knowing at least the compiler, so we inject
|
|
# a dummy one
|
|
mkdir -p ${HOME}/.spack/linux/
|
|
cat > ${HOME}/.spack/linux/compilers.yaml <<EOF
|
|
compilers:
|
|
- compiler:
|
|
spec: gcc@7.5.0
|
|
paths:
|
|
cc: /usr/bin/gcc
|
|
cxx: /usr/bin/g++
|
|
f77: /usr/bin/gfortran
|
|
fc: /usr/bin/gfortran
|
|
flags: {}
|
|
operating_system: SUSE
|
|
target: x86_64
|
|
modules: []
|
|
environment:
|
|
unset: []
|
|
extra_rpaths: []
|
|
EOF
|
|
make man info #text dirhtml
|
|
gzip _build/texinfo/Spack.info _build/man/spack.1
|
|
%endif
|
|
|
|
%install
|
|
# combine READMEs
|
|
cat %{S:4} >> %{S:1}
|
|
%if %{without doc}
|
|
cp %{S:1} .
|
|
# Fix some rpmlint warnings
|
|
## Remove files not required to run spack
|
|
rm -rf lib/spack/spack/test
|
|
rm -rf share/spack/qa
|
|
rm -rf share/spack/logo
|
|
rm -rf var/spack/repos/builtin.mock var/spack/gpg.mock var/spack/mock_configs
|
|
rm -rf lib/spack/external/ruamel/yaml/.ruamel
|
|
find . -type f -name .gitignore -delete
|
|
find . -type f -name .nojekyll -delete
|
|
# Fix _spack_root link
|
|
rm -f lib/spack/docs/_spack_root
|
|
ln -sf ../.. lib/spack/docs/_spack_root
|
|
# Do not ship Docker and container building for now - needs fixing
|
|
rm -rf share/spack/{templates/container}
|
|
rm -rf share/spack/docker/{centos,ubuntu}*.dockerfile
|
|
# Do not ship AWS specifics
|
|
rm -f share/spack/setup-tutorial-env.sh
|
|
# Fix rpmlint warnings
|
|
## No need for the standalone scripts
|
|
rm -f lib/spack/external/macholib/macho_*.py
|
|
## Fix shebangs
|
|
sed -i 's@#!/bin/env sh@#!/bin/bash@' var/spack/repos/builtin/packages/beast-tracer/tracer
|
|
sed -i 's@#! /usr/bin/env bash@ #!/bin/bash@' share/spack/docker/entrypoint.bash
|
|
sed -i 's@#!/usr/bin/env bash@#!/bin/bash@' share/spack/docker/package-index/split.sh
|
|
|
|
mkdir -p %{buildroot}%{spack_dir}
|
|
mkdir -p %{buildroot}%{spack_dir}/opt
|
|
mkdir -p %{buildroot}%{_datarootdir}/spack/lib/spack
|
|
mkdir -p %{buildroot}%{_datarootdir}/spack/modules
|
|
mkdir -p %{buildroot}%{_localstatedir}/lib/spack
|
|
mkdir -p %{buildroot}%{_localstatedir}/lib/spack/junit-report
|
|
mkdir -p %{buildroot}%{_localstatedir}/cache/spack
|
|
mkdir -p %{buildroot}%{_sysconfdir}/skel/.spack/
|
|
mkdir -p %{buildroot}/%{_bindir}
|
|
# Link avoids having to fix paths
|
|
ln -sf %{buildroot}/%{_localstatedir}/cache/spack %{buildroot}%{_localstatedir}/lib/spack/cache
|
|
|
|
# Copy files to corresponding paths
|
|
cp -r etc %{buildroot}%{_prefix}
|
|
cp -r lib/spack/{env,external,llnl,spack} %{buildroot}%{spack_dir}
|
|
cp -r share/spack/* %{buildroot}%{_datarootdir}/spack
|
|
cp -r var/spack/* %{buildroot}%{_localstatedir}/lib/spack
|
|
cp -r bin/sbang %{buildroot}/%{_bindir}
|
|
cp -r bin/spack* %{buildroot}%{_bindir}/
|
|
cp etc/spack/defaults/config.yaml %{buildroot}%{_sysconfdir}/skel/.spack/
|
|
install -m 755 %{S:3} %{buildroot}/%{spack_dir}/run-find-external.sh
|
|
|
|
# Fix more paths
|
|
sed -i 's@\(\sroot:\) $spack/opt/spack@\1 ~/spack/packages@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
|
|
sed -i 's@\(\ssource_cache:\).*@\1 /var/tmp/$user/spack-cache@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
|
|
sed -i 's@\(\stcl:\).*@\1 ~/spack/modules@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
|
|
sed -i 's@\(\slmod:\).*@\1 ~/spack/lmod@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
|
|
cat >> %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml <<EOF
|
|
binary_index_root: ~/.spack/indices
|
|
EOF
|
|
|
|
# compile python files for python3
|
|
# %%{buildroot}%%{spack_dir}/spack
|
|
%py_compile .
|
|
|
|
# make shell scripts executeable
|
|
find %{buildroot}%{_localstatedir}/lib/spack/ -type f -name \*.sh -exec chmod 755 {} \;
|
|
|
|
# Create /etc/spack/compilers.yaml
|
|
mkdir -p %{buildroot}%{spack_dir}/etc/spack/
|
|
cat > %{buildroot}%{spack_dir}/etc/spack/compilers.yaml <<EOF
|
|
compilers:
|
|
- compiler:
|
|
spec: gcc@GCC_FULL_VERSION
|
|
paths:
|
|
cc: /usr/bin/gcc-GCC_VERSION
|
|
cxx: /usr/bin/g++-GCC_VERSION
|
|
f77: /usr/bin/gfortran-GCC_VERSION
|
|
fc: /usr/bin/gfortran-GCC_VERSION
|
|
flags: {}
|
|
operating_system: SUSE_VERSION
|
|
target: HOSTTYPE
|
|
modules: []
|
|
environment:
|
|
unset: []
|
|
extra_rpaths: []
|
|
EOF
|
|
|
|
# Create /etc/profile.d/spack.sh
|
|
# This file properly sets MODULEPATH so lua-lmod can find the modules created by spack
|
|
mkdir -p %{buildroot}/%{_sysconfdir}/profile.d
|
|
cat > %{buildroot}/%{_sysconfdir}/profile.d/spack.sh <<EOF
|
|
source /etc/os-release
|
|
if [ "\${ID}" == "opensuse-tumbleweed" ] ; then
|
|
SPACK_NAME="\${ID/-/}"
|
|
else
|
|
SPACK_NAME="\${ID/-/_}\${VERSION_ID/.*/}"
|
|
fi
|
|
export SPACK_ROOT=%{spack_dir}
|
|
export MODULEPATH=~/spack/modules/linux-\${SPACK_NAME}-\${CPU}:%{_prefix}/share/spack/modules/linux-\${SPACK_NAME}-\${CPU}:\${MODULEPATH}
|
|
# copy local configuration, if its not there
|
|
if [ ! -e ~/.spack/config.yaml ] ; then
|
|
# test if user is in spack group by touching database
|
|
if ! touch %{spack_dir}/.spack-db &> /dev/null ; then
|
|
test -e ~/.spack || mkdir -p ~/.spack
|
|
[ -e ~/.spack/config.yaml ] || \
|
|
cp -r %{_sysconfdir}/skel/.spack/config.yaml ~/.spack/
|
|
fi
|
|
fi
|
|
EOF
|
|
# Same for csh
|
|
cat > %{buildroot}/%{_sysconfdir}/profile.d/spack.csh <<EOF
|
|
# get ID
|
|
eval \`awk '/^ID=/ {sub("-","_"); printf("set %%s",\$0);}' /etc/os-release\`
|
|
# get VERSION_ID
|
|
eval \`awk '/^VERSION_ID=/ {sub("\\\\.[0-9]",""); printf("set %%s",\$0);}' /etc/os-release\`
|
|
if ( \$ID == "opensuse_tumbleweed" ) then
|
|
eval \`awk '/^ID=/ {sub("-",""); printf("set %%s",\$0);}' /etc/os-release\`
|
|
set SPACK_NAME=\$ID
|
|
else
|
|
set SPACK_NAME="\${ID}\${VERSION_ID}"
|
|
endif
|
|
set SPACK_ROOT="%{spack_dir}"
|
|
set MODULEPATH="~/spack/modules/linux-\${SPACK_NAME}-\${CPU}:%{_prefix}/share/spack/modules/linux-\${SPACK_NAME}-\${CPU}:\${MODULEPATH}"
|
|
if ( ! -e ~/.spack/config.yaml ) then
|
|
# test if user is in spack group by touching database
|
|
touch %{spack_dir}/.spack-db >& /dev/null
|
|
if ( \$? == 1 ) then
|
|
test -e ~/.spack || mkdir -p ~/.spack
|
|
test -e ~/.spack/config.yaml || \
|
|
cp -r %{_sysconfdir}/skel/.spack/config.yaml ~/.spack/
|
|
endif
|
|
endif
|
|
|
|
EOF
|
|
# Create modules.yaml file, so that hierarchy module files are created
|
|
cat > %{buildroot}%{spack_dir}/etc/spack/modules.yaml <<EOF
|
|
modules:
|
|
enable:
|
|
- lmod
|
|
lmod:
|
|
core_compilers:
|
|
- 'gcc@GCC_FULL_VERSION'
|
|
projections:
|
|
all: '{compiler.name}-{compiler.version}/{name}/{version}'
|
|
^mpi: '{compiler.name}-{compiler.version}/{^mpi.name}-{^mpi.version}/{name}/{version}'
|
|
EOF
|
|
mkdir -p %{buildroot}%{_sysconfdir}/spack
|
|
|
|
# Fix link to not point into buildroot
|
|
rm -f %{buildroot}%{_localstatedir}/lib/spack/cache
|
|
ln -sf %{_localstatedir}/cache/spack %{buildroot}%{_localstatedir}/lib/spack/cache
|
|
# Remove problematic binaries which are removed upstream with
|
|
# 0889be20e0d9dcdf4346cdeaa0647285187375f3
|
|
rm -r %{buildroot}%{_localstatedir}/lib/spack/repos/builtin/packages/patchelf/test/
|
|
%fdupes %{buildroot}%{spack_dir}
|
|
%fdupes %{buildroot}%{_datarootdir}/spack
|
|
%fdupes %{buildroot}%{_localstatedir}/lib/spack
|
|
%else
|
|
mkdir -p %{buildroot}%{_infodir}
|
|
mkdir -p %{buildroot}%{_mandir}/man1
|
|
cd lib/spack/docs/_build
|
|
cp man/spack.1.gz %{buildroot}%{_mandir}/man1/
|
|
cp -r texinfo/Spack.info.gz %{buildroot}%{_infodir}
|
|
[ -d texinfo/Spack-figures ] && cp -r texinfo/Spack-figures %{buildroot}%{_infodir}
|
|
%endif
|
|
|
|
%pre
|
|
getent group %spack_group >/dev/null || groupadd -r %spack_group
|
|
|
|
%post
|
|
# Replace /etc/spack/compilers.yaml
|
|
export GCC_VERSION=`gcc -dumpversion`
|
|
export GCC_FULL_VERSION=`gcc -dumpfullversion`
|
|
|
|
sed -i "s@GCC_FULL_VERSION@$GCC_FULL_VERSION@" %{spack_dir}/etc/spack/compilers.yaml
|
|
sed -i "s@GCC_FULL_VERSION@$GCC_FULL_VERSION@" %{spack_dir}/etc/spack/modules.yaml
|
|
sed -i "s@GCC_VERSION@$GCC_VERSION@" %{spack_dir}/etc/spack/compilers.yaml
|
|
if [ -e /etc/os-release ] ; then
|
|
source /etc/os-release
|
|
if [ "${ID}" == "opensuse-tumbleweed" ] ; then
|
|
export SPACK_NAME="${ID/-/}"
|
|
else
|
|
export SPACK_NAME="${ID/-/_}${VERSION_ID/.*/}"
|
|
fi
|
|
sed -i "s@SUSE_VERSION@$SPACK_NAME@" %{spack_dir}/etc/spack/compilers.yaml
|
|
sed -i "s@SUSE_VERSION@$SPACK_NAME@g" /etc/profile.d/spack.sh
|
|
fi
|
|
sed -i "s@HOSTTYPE@$HOSTTYPE@" %{spack_dir}/etc/spack/compilers.yaml
|
|
# find installed programms
|
|
/usr/lib/spack/run-find-external.sh
|
|
|
|
%triggerin -- %{?spack_trigger_recommended} %{?spack_trigger_packages} %{?spack_trigger_external}
|
|
/usr/lib/spack/run-find-external.sh
|
|
|
|
%triggerpostun -- %{?spack_trigger_recommended} %{?spack_trigger_packages} %{?spack_trigger_external}
|
|
/usr/lib/spack/run-find-external.sh
|
|
|
|
%if %{without doc}
|
|
%files
|
|
%license COPYRIGHT LICENSE-APACHE LICENSE-MIT
|
|
%doc CHANGELOG.md NOTICE README.md README.SUSE
|
|
%dir %{_sysconfdir}/spack/
|
|
%{_bindir}/*
|
|
%if 0%{?suse_version} <= 1500
|
|
%dir %{_prefix}/etc
|
|
%endif
|
|
%{_prefix}/etc/spack
|
|
%attr(0775, root, spack) %{_localstatedir}/lib/spack/junit-report
|
|
%attr(0775, root, spack) %{spack_dir}/opt
|
|
%attr(0775, root, spack) %{_localstatedir}/cache/spack
|
|
%attr(0775, root, spack) %{_datarootdir}/spack/modules
|
|
%{spack_dir}
|
|
%{_localstatedir}/cache/spack
|
|
%{_localstatedir}/lib/spack
|
|
%{_datarootdir}/spack
|
|
%config %{_sysconfdir}/profile.d/spack.sh
|
|
%ghost %config %{_sysconfdir}/spack/packages.yaml
|
|
%config %{_sysconfdir}/profile.d/spack.csh
|
|
%dir %{_sysconfdir}/skel/.spack
|
|
%config %{_sysconfdir}/skel/.spack/config.yaml
|
|
# repos directory is installed in -recipes
|
|
%exclude %{_localstatedir}/lib/spack/repos
|
|
|
|
%files recipes
|
|
%license COPYRIGHT LICENSE-APACHE LICENSE-MIT
|
|
%doc CHANGELOG.md NOTICE README.md
|
|
%{_localstatedir}/lib/spack/repos
|
|
|
|
%else
|
|
|
|
%post info
|
|
%install_info --info-dir=%{_infodir} --info-file="%{_infodir}/Spack.info.gz"
|
|
|
|
%preun info
|
|
%install_info_delete --info-dir=%{_infodir} --info-file="%{_infodir}/Spack.info.gz"
|
|
|
|
%files man
|
|
%{_mandir}/man1/*
|
|
|
|
%files info
|
|
%{_infodir}/*
|
|
|
|
%endif
|
|
|
|
%changelog
|