Christian Goll
4a67e53095
`spack external find` as nobody and not as root as the bzip2 binary is found and removed warning for this corner case in rpmlinrc OBS-URL: https://build.opensuse.org/request/show/882406 OBS-URL: https://build.opensuse.org/package/show/network:cluster/spack?expand=0&rev=16
444 lines
16 KiB
RPMSpec
444 lines
16 KiB
RPMSpec
#
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# spec file for package spack
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#
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# Copyright (c) 2021 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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%global flavor @BUILD_FLAVOR@%{?nil}
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%if "%{flavor}" == "doc"
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%bcond_without doc
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%endif
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%if %{with doc} && (0%{?sle_version} > 0) && (150200 >= 0%{?sle_version})
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ExclusiveArch: do_not_build
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%endif
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%define spack_dir %_prefix/lib/spack/
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%define spack_group spack
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# These packages are found and can be used by spack, /etc/spack/packages-yaml
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# needs to be updated when one of these packages is updated or uninstalled.
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# Distinguish between packages we recommend and packages which
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%define spack_trigger_recommended autoconf bash bison bzip2 cmake-full ccache cpio diffutils findutils flex gcc gcc-fortran git-lfs make m4 ncurses-devel libtool openssl perl-base pkgconf pkgconf-pkg-config python3-basetar info xz
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# packages recognized by spack, but not recommended
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%define spack_trigger_packages ghostscript go fish fzf hugo java-11-openjdk-devel java-14-openjdk-devel java-15-openjdk-devel java-16-openjdk-devel java-1_8_0-openjdk-devel ruby openmpi1-devel openmpi2-devel openmpi3-devel openmpi4-devel openmpi1-gnu-hpc-devel openmpi2-gnu-hpc-devel openmpi3-gnu-hpc-devel openmpi4-gnu-hpc-devel mvapich2-devel mpich-devel gcc7 gcc8 gcc10 gcc11
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# non oss packages
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%define spack_trigger_external cuda-nvcc
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Name: spack
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Version: 0.16.1
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Release: 0
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Summary: Package manager for HPC systems
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License: Apache-2.0 AND MIT AND Python-2.0 AND BSD-3-Clause
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URL: https://spack.io
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Source0: https://github.com/spack/spack/archive/v%{version}.tar.gz#/spack-%{version}.tar.gz
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Source1: README.SUSE
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Source2: spack-rpmlintrc
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Source3: run-find-external.sh
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Patch0: Make-spack-paths-compliant-to-distro-installation.patch
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Patch1: fix-tumbleweed-naming.patch
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Patch2: Adapt-shell-scripts-that-set-up-the-environment-for-different-shells.patch
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Patch3: added-dockerfile-for-opensuse-leap-15.patch
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Patch4: added-target-and-os-calls-to-output-of-spack-spec-co.patch
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Patch5: Fix-documentation-so-that-parser-doesn-t-stumble.patch
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Patch6: Fix-error-during-documentation-build-due-to-recursive-module-inclusion.patch
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Patch7: basic-exclude-pattern-for-external-find.patch
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# upstream patch removes also problemtatic binaries
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#Patch4: spack-test-15702.patch
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%if %{without doc}
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BuildRequires: fdupes
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BuildRequires: lua-lmod
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BuildRequires: polkit
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BuildRequires: python-base
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BuildRequires: python3-urllib3
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BuildRequires: sudo
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Requires: %{name}-recipes = %{version}
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Requires: bzip2
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Requires: curl
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Requires: gcc-fortran
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Requires: gpg2
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Requires: libbz2-devel
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Requires: lua-lmod
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Requires: polkit
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Requires: spack-recipes
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Requires: sudo
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Requires: xz
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Recommends: %spack_trigger_recommended
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Recommends: spack-recipes = %version
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%else
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BuildRequires: %{python_module Sphinx >= 1.8}
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BuildRequires: %{python_module sphinxcontrib-programoutput}
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BuildRequires: git
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BuildRequires: makeinfo
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BuildRequires: spack
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# html
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BuildRequires: graphviz
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# info
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BuildRequires: graphviz-gnome
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## pdf
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# BuildRequires: python3-Sphinx-latex
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Requires: spack
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%endif
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BuildArch: noarch
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%if 0%{?sle_version} <= 120500 && !0%{?is_opensuse}
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%define __python3 python3
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%endif
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%description
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Spack is a configurable Python-based HPC package manager, automating
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the installation and fine-tuning of simulations and libraries.
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It operates on a wide variety of HPC platforms and enables users
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to build many code configurations. Software installed by Spack
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runs correctly regardless of environment, and file management
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is streamlined. Spack can install many variants of the same build
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using different compilers, options, and MPI implementations.
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This package provides a module file that must be loaded to use spack.
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%package recipes
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Summary: Spack built-in package recipes
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Requires: %{name} >= %version
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%description recipes
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Spack is a configurable Python-based HPC package manager, automating
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the installation and fine-tuning of simulations and libraries.
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It operates on a wide variety of HPC platforms and enables users
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to build many code configurations. Software installed by Spack
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runs correctly regardless of environment, and file management
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is streamlined. Spack can install many variants of the same build
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using different compilers, options, and MPI implementations.
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This package contains the built-in package recipes.
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%package man
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Summary: Man Page for Spack - Package manager for HPC systems
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Requires: man
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%description man
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Spack is a configurable Python-based HPC package manager, automating
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the installation and fine-tuning of simulations and libraries.
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It operates on a wide variety of HPC platforms and enables users
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to build many code configurations. Software installed by Spack
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runs correctly regardless of environment, and file management
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is streamlined. Spack can install many variants of the same build
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using different compilers, options, and MPI implementations.
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This package contains the man page.
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%package info
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Summary: Info Page for Spack - Package manager for HPC systems
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Requires: info
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%description info
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Spack is a configurable Python-based HPC package manager, automating
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the installation and fine-tuning of simulations and libraries.
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It operates on a wide variety of HPC platforms and enables users
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to build many code configurations. Software installed by Spack
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runs correctly regardless of environment, and file management
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is streamlined. Spack can install many variants of the same build
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using different compilers, options, and MPI implementations.
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This package contains the info page.
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%prep
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%setup -q
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%autopatch -p1
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%if %{without doc}
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# set SPACK_ROOT
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for i in share/spack/setup-env.*; do
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sed -i -e "s;@@_prefix@@;%_prefix;g" $i
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done
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%endif
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%build
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# Nothing to build
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%if %{with doc}
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cd lib/spack/docs
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# Causes issues building texinfo as a suitable image cannot be found
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grep -rl ":target:" | xargs sed -i -e "/:target:/s/^/#/" -e "/figure::/s/^/#/"
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# Fix path to var - we install this to the 'real' /var
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grep -rl "\$SPACK_ROOT/var" | xargs sed -i -e "s@\(.*\)\$SPACK_ROOT/var\(/spack.*\)@\1/var/lib\2@g"
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# spack cannot run without knowing at least the compiler, so we inject
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# a dummy one
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mkdir -p ${HOME}/.spack/linux/
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cat > ${HOME}/.spack/linux/compilers.yaml <<EOF
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compilers:
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- compiler:
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spec: gcc@7.5.0
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paths:
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cc: /usr/bin/gcc
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cxx: /usr/bin/g++
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f77: /usr/bin/gfortran
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fc: /usr/bin/gfortran
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flags: {}
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operating_system: SUSE
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target: x86_64
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modules: []
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environment:
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unset: []
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extra_rpaths: []
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EOF
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make man info #text dirhtml
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gzip _build/texinfo/Spack.info _build/man/spack.1
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%endif
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%install
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%if %{without doc}
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cp %{S:1} .
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# Fix some rpmlint warnings
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## Remove files not required to run spack
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rm -rf lib/spack/spack/test
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rm -rf share/spack/qa
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rm -rf share/spack/logo
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rm -rf var/spack/repos/builtin.mock var/spack/gpg.mock var/spack/mock_configs
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rm -rf lib/spack/external/ruamel/yaml/.ruamel
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find . -type f -name .gitignore -delete
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find . -type f -name .nojekyll -delete
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# Fix _spack_root link
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rm -f lib/spack/docs/_spack_root
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ln -sf ../.. lib/spack/docs/_spack_root
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# Do not ship Docker and container building for now - needs fixing
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rm -rf share/spack/{templates/container}
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rm -rf share/spack/docker/{centos,ubuntu}*.dockerfile
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# Do not ship AWS specifics
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rm -f share/spack/setup-tutorial-env.sh
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# Fix rpmlint warnings
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## No need for the standalone scripts
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rm -f lib/spack/external/macholib/macho_*.py
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## Fix shebangs
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sed -i 's@#!/bin/env sh@#!/bin/bash@' var/spack/repos/builtin/packages/beast-tracer/tracer
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sed -i 's@#! /usr/bin/env bash@ #!/bin/bash@' share/spack/docker/entrypoint.bash
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sed -i 's@#!/usr/bin/env bash@#!/bin/bash@' share/spack/docker/package-index/split.sh
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mkdir -p %{buildroot}%{spack_dir}
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mkdir -p %{buildroot}%{spack_dir}/opt
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mkdir -p %{buildroot}%{_datarootdir}/spack/lib/spack
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mkdir -p %{buildroot}%{_datarootdir}/spack/modules
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mkdir -p %{buildroot}%{_localstatedir}/lib/spack
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mkdir -p %{buildroot}%{_localstatedir}/lib/spack/junit-report
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mkdir -p %{buildroot}%{_localstatedir}/cache/spack
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mkdir -p %{buildroot}%{_sysconfdir}/skel/.spack/
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mkdir -p %{buildroot}/%{_bindir}
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# Link avoids having to fix paths
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ln -sf %{buildroot}/%{_localstatedir}/cache/spack %{buildroot}%{_localstatedir}/lib/spack/cache
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# Copy files to corresponding paths
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cp -r etc %{buildroot}%{_prefix}
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cp -r lib/spack/{env,external,llnl,spack} %{buildroot}%{spack_dir}
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cp -r share/spack/* %{buildroot}%{_datarootdir}/spack
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cp -r var/spack/* %{buildroot}%{_localstatedir}/lib/spack
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cp -r bin/sbang %{buildroot}/%{_bindir}
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cp -r bin/spack* %{buildroot}%{_bindir}/
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cp etc/spack/defaults/config.yaml %{buildroot}%{_sysconfdir}/skel/.spack/
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install -m 755 %{S:3} %{buildroot}/%{spack_dir}/run-find-external.sh
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# Fix more paths
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sed -i 's@\(\sroot:\) $spack/opt/spack@\1 ~/spack/packages@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
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sed -i 's@\(\ssource_cache:\).*@\1 /var/tmp/$user/spack-cache@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
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sed -i 's@\(\stcl:\).*@\1 ~/spack/modules@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
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sed -i 's@\(\slmod:\).*@\1 ~/spack/lmod@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
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cat >> %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml <<EOF
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# Timeout in seconds used for downloading sources etc. This only applies
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# to the connection phase and can be increased for slow connections or
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# servers. 0 means no timeout.
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binary_index_root: ~/.spack/indices
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EOF
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# compile python files for python3
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# %%{buildroot}%%{spack_dir}/spack
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%py_compile .
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# make shell scripts executeable
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find %{buildroot}%{_localstatedir}/lib/spack/ -type f -name \*.sh -exec chmod 755 {} \;
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# Create /etc/spack/compilers.yaml
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mkdir -p %{buildroot}%{spack_dir}/etc/spack/
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cat > %{buildroot}%{spack_dir}/etc/spack/compilers.yaml <<EOF
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compilers:
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- compiler:
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spec: gcc@GCC_FULL_VERSION
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paths:
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cc: /usr/bin/gcc-GCC_VERSION
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cxx: /usr/bin/g++-GCC_VERSION
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f77: /usr/bin/gfortran-GCC_VERSION
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fc: /usr/bin/gfortran-GCC_VERSION
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flags: {}
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operating_system: SUSE_VERSION
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target: HOSTTYPE
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modules: []
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environment:
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unset: []
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extra_rpaths: []
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EOF
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# Create /etc/profile.d/spack.sh
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# This file properly sets MODULEPATH so lua-lmod can find the modules created by spack
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mkdir -p %{buildroot}/%{_sysconfdir}/profile.d
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cat > %{buildroot}/%{_sysconfdir}/profile.d/spack.sh <<EOF
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source /etc/os-release
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if [ "\${ID}" == "opensuse-tumbleweed" ] ; then
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SPACK_NAME="\${ID/-/}"
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else
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SPACK_NAME="\${ID/-/_}\${VERSION_ID/.*/}"
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fi
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export SPACK_ROOT=%{spack_dir}
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export MODULEPATH=~/spack/modules/linux-\${SPACK_NAME}-\${CPU}:%{_prefix}/share/spack/modules/linux-\${SPACK_NAME}-\${CPU}:\${MODULEPATH}
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# copy local configuration, if its not there
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if [ ! -e ~/.spack/config.yaml ] ; then
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# test if user is in spack group by touching database
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if ! touch %{spack_dir}/.spack-db &> /dev/null ; then
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test -e ~/.spack || mkdir -p ~/.spack
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[ -e ~/.spack/config.yaml ] || \
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cp -r %{_sysconfdir}/skel/.spack/config.yaml ~/.spack/
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fi
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fi
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EOF
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# Same for csh
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cat > %{buildroot}/%{_sysconfdir}/profile.d/spack.csh <<EOF
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# get ID
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eval \`awk '/^ID=/ {sub("-","_"); printf("set %%s",\$0);}' /etc/os-release\`
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# get VERSION_ID
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eval \`awk '/^VERSION_ID=/ {sub("\\\\.[0-9]",""); printf("set %%s",\$0);}' /etc/os-release\`
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if ( \$ID == "opensuse_tumbleweed" ) then
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eval \`awk '/^ID=/ {sub("-",""); printf("set %%s",\$0);}' /etc/os-release\`
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set SPACK_NAME=\$ID
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else
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set SPACK_NAME="\${ID}\${VERSION_ID}"
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endif
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set SPACK_ROOT="%{spack_dir}"
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set MODULEPATH="~/spack/modules/linux-\${SPACK_NAME}-\${CPU}:%{_prefix}/share/spack/modules/linux-\${SPACK_NAME}-\${CPU}:\${MODULEPATH}"
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if ( ! -e ~/.spack/config.yaml ) then
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# test if user is in spack group by touching database
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touch %{spack_dir}/.spack-db >& /dev/null
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if ( \$? == 1 ) then
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test -e ~/.spack || mkdir -p ~/.spack
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test -e ~/.spack/config.yaml || \
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cp -r %{_sysconfdir}/skel/.spack/config.yaml ~/.spack/
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endif
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endif
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EOF
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# Create modules.yaml file, so that hierarchy module files are created
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cat > %{buildroot}%{spack_dir}/etc/spack/modules.yaml <<EOF
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modules:
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enable:
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- lmod
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lmod:
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core_compilers:
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- 'gcc@GCC_FULL_VERSION'
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projections:
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all: '{compiler.name}-{compiler.version}/{name}/{version}'
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^mpi: '{compiler.name}-{compiler.version}/{^mpi.name}-{^mpi.version}/{name}/{version}'
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EOF
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mkdir -p %{buildroot}%{_sysconfdir}/spack
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# Fix link to not point into buildroot
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rm -f %{buildroot}%{_localstatedir}/lib/spack/cache
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ln -sf %{_localstatedir}/cache/spack %{buildroot}%{_localstatedir}/lib/spack/cache
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# Remove problematic binaries which are removed upstream with
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# 0889be20e0d9dcdf4346cdeaa0647285187375f3
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rm -r %{buildroot}%{_localstatedir}/lib/spack/repos/builtin/packages/patchelf/test/
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%fdupes %{buildroot}%{spack_dir}
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%fdupes %{buildroot}%{_datarootdir}/spack
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%fdupes %{buildroot}%{_localstatedir}/lib/spack
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%else
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mkdir -p %{buildroot}%{_infodir}
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mkdir -p %{buildroot}%{_mandir}/man1
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cd lib/spack/docs/_build
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cp man/spack.1.gz %{buildroot}%{_mandir}/man1/
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cp -r texinfo/Spack.info.gz %{buildroot}%{_infodir}
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[ -d texinfo/Spack-figures ] && cp -r texinfo/Spack-figures %{buildroot}%{_infodir}
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%endif
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%pre
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getent group %spack_group >/dev/null || groupadd -r %spack_group
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%post
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# Replace /etc/spack/compilers.yaml
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export GCC_VERSION=`gcc -dumpversion`
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export GCC_FULL_VERSION=`gcc -dumpfullversion`
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sed -i "s@GCC_FULL_VERSION@$GCC_FULL_VERSION@" %{spack_dir}/etc/spack/compilers.yaml
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sed -i "s@GCC_FULL_VERSION@$GCC_FULL_VERSION@" %{spack_dir}/etc/spack/modules.yaml
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sed -i "s@GCC_VERSION@$GCC_VERSION@" %{spack_dir}/etc/spack/compilers.yaml
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if [ -e /etc/os-release ] ; then
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source /etc/os-release
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if [ "${ID}" == "opensuse-tumbleweed" ] ; then
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export SPACK_NAME="${ID/-/}"
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else
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export SPACK_NAME="${ID/-/_}${VERSION_ID/.*/}"
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fi
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sed -i "s@SUSE_VERSION@$SPACK_NAME@" %{spack_dir}/etc/spack/compilers.yaml
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sed -i "s@SUSE_VERSION@$SPACK_NAME@g" /etc/profile.d/spack.sh
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fi
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sed -i "s@HOSTTYPE@$HOSTTYPE@" %{spack_dir}/etc/spack/compilers.yaml
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# find installed programms
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/usr/lib/spack/run-find-external.sh
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%triggerin -- %{?spack_trigger_recommended} %{?spack_trigger_packages} %{?spack_trigger_external}
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/usr/lib/spack/run-find-external.sh
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%triggerpostun -- %{?spack_trigger_recommended} %{?spack_trigger_packages} %{?spack_trigger_external}
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/usr/lib/spack/run-find-external.sh
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%if %{without doc}
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%files
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%license COPYRIGHT LICENSE-APACHE LICENSE-MIT
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%doc CHANGELOG.md NOTICE README.md README.SUSE
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%dir %{_sysconfdir}/spack/
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%{_bindir}/*
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%if 0%{?suse_version} <= 1500
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%dir %{_prefix}/etc
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%endif
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%{_prefix}/etc/spack
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%attr(0775, root, spack) %{_localstatedir}/lib/spack/junit-report
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%attr(0775, root, spack) %{spack_dir}/opt
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%attr(0775, root, spack) %{_localstatedir}/cache/spack
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%attr(0775, root, spack) %{_datarootdir}/spack/modules
|
|
%{spack_dir}
|
|
%{_localstatedir}/cache/spack
|
|
%{_localstatedir}/lib/spack
|
|
%{_datarootdir}/spack
|
|
%config %{_sysconfdir}/profile.d/spack.sh
|
|
%ghost %config %{_sysconfdir}/spack/packages.yaml
|
|
%config %{_sysconfdir}/profile.d/spack.csh
|
|
%dir %{_sysconfdir}/skel/.spack
|
|
%config %{_sysconfdir}/skel/.spack/config.yaml
|
|
# repos directory is installed in -recipes
|
|
%exclude %{_localstatedir}/lib/spack/repos
|
|
|
|
%files recipes
|
|
%license COPYRIGHT LICENSE-APACHE LICENSE-MIT
|
|
%doc CHANGELOG.md NOTICE README.md
|
|
%{_localstatedir}/lib/spack/repos
|
|
|
|
%else
|
|
|
|
%post info
|
|
%install_info --info-dir=%{_infodir} --info-file="%{_infodir}/Spack.info.gz"
|
|
|
|
%preun info
|
|
%install_info_delete --info-dir=%{_infodir} --info-file="%{_infodir}/Spack.info.gz"
|
|
|
|
%files man
|
|
%{_mandir}/man1/*
|
|
|
|
%files info
|
|
%{_infodir}/*
|
|
|
|
%endif
|
|
|
|
%changelog
|