Accepting request 503224 from science
1 OBS-URL: https://build.opensuse.org/request/show/503224 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/suitesparse?expand=0&rev=21
This commit is contained in:
Dominique Leuenberger
Git OBS Bridge
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commit
b2dae4d55a
@ -1,3 +0,0 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:7f22509d87ada8506580d537efde79cf90e28e228355c18b8bf603aad1a2d7b6
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size 25627898
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3
SuiteSparse-4.5.5.tar.gz
Normal file
3
SuiteSparse-4.5.5.tar.gz
Normal file
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version https://git-lfs.github.com/spec/v1
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oid sha256:b9a98de0ddafe7659adffad8a58ca3911c1afa8b509355e7aa58b02feb35d9b6
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size 30309650
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@ -1,20 +0,0 @@
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--- SuiteSparse.4.4.3/SuiteSparse_config/SuiteSparse_config.mk 2015-01-20 00:46:25.000000000 +0100
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+++ SuiteSparse.4.4.1/SuiteSparse_config/SuiteSparse_config.mk 2014-10-23 22:57:40.000000000 +0200
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@@ -119,7 +119,7 @@
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# naming the BLAS and LAPACK library (*.a or *.so) files.
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# This is probably slow ... it might connect to the Standard Reference BLAS:
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-# BLAS = -lblas -lgfortran
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+ BLAS = -lblas -lgfortran
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LAPACK = -llapack
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# MKL
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@@ -131,7 +131,7 @@
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# LAPACK =
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# OpenBLAS
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- BLAS = -lopenblas
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+# BLAS = -lopenblas
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# LAPACK =
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# NOTE: this next option for the "Goto BLAS" has nothing to do with a "goto"
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@ -1,12 +0,0 @@
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diff -urN SuiteSparse.orig/SuiteSparse_config/Makefile SuiteSparse/SuiteSparse_config/Makefile
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--- SuiteSparse.orig/SuiteSparse_config/Makefile 2012-08-15 10:44:18.241183146 +0800
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+++ SuiteSparse/SuiteSparse_config/Makefile 2012-08-16 01:00:40.966163200 +0800
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@@ -18,7 +18,7 @@
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$(CC) $(CF) -c SuiteSparse_config.c
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$(ARCHIVE) libsuitesparseconfig.a SuiteSparse_config.o
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$(RANLIB) libsuitesparseconfig.a
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- - $(RM) SuiteSparse_config.o
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+# - $(RM) SuiteSparse_config.o
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distclean: purge
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@ -1,3 +1,49 @@
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-------------------------------------------------------------------
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Sun Jun 11 01:49:03 UTC 2017 - toddrme2178@gmail.com
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- Update to version 4.5.5
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* minor fix to SuiteSparse/Makefile for 'make install'
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- Update to version 4.5.4
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* minor update to SPQR for ACM TOMS submission
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- Update to version 4.5.3
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* minor changes to Makefiles
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- Update to version 4.5.2
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* licensing simplified (no other change); refer to PACKAGE/Doc/License.txt
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for the license for each package.
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- Update to version 4.5.1
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* update to Makefiles. Version 4.5.0 is broken on the Mac.
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That version also compiles *.so libraries on Linux with
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underlinked dependencies to other libraries in SuiteSparse.
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For example, AMD requires SuiteSparse_config. The links to
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required libraries are now explicitly included in each library,
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in SuiteSparse 4.5.1.
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* minor change to CHOLMOD/Check/cholmod_write.c, when compiling with
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options that disable specific modules
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- Update to version 4.5.0
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* better Makefiles for creating and installing shared libraries
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* CHOLMOD now uses METIS 5.1.0, which is distributed with SuiteSparse
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* fix for MATLAB R2015b, which changed how it creates empty matrices,
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as compared to prior versions of MATLAB. This change in MATLAB
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breaks many of the mexFunctions in prior versions of SuiteSparse.
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If you use MATLAB R2015b, you must upgrade to SuiteSparse 4.5.0
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or later.
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- Update to version 4.4.7
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* note that this minor update fails on the Mac, so its
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listed on my web page as a 'beta' release.
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* Improved the Makefiles of all packages. They now create *.so
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shared libraries (*.dylib on the Mac). Also, there is now
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only a single SuiteSparse_config.mk file. It now determines
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your system automatically, and whether or not you have METIS
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and CUDA. It also automatically detects if you have the Intel
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compiler or not, and uses it if it finds it. There should be
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no need to edit this file for most cases, but you may need to
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for your particular system. With this release, there are almost
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no changes to the source code, except for the VERSION numbers
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defined in the various include *.h files for each package.
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- Use faster openblas.
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* Remove blas-instead-of-openblas-SuiteSparse_config_mk.patch
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- Remove upstream-included no-removal-of-suitesparse_config-output.patch
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-------------------------------------------------------------------
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Sat Dec 5 13:40:52 UTC 2015 - foss@grueninger.de
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106
suitesparse.spec
106
suitesparse.spec
@ -1,7 +1,7 @@
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#
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# spec file for package suitesparse
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#
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# Copyright (c) 2015 SUSE LINUX GmbH, Nuernberg, Germany.
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# Copyright (c) 2017 SUSE LINUX GmbH, Nuernberg, Germany.
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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@ -20,49 +20,49 @@ Name: suitesparse
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Summary: A collection of sparse matrix libraries
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License: GPL-2.0+ and LGPL-2.1+
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Group: Development/Libraries
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Version: 4.4.6
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Version: 4.5.5
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Release: 0
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Url: http://faculty.cse.tamu.edu/davis/SuiteSparse/
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Source: SuiteSparse-%{version}.tar.gz
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Source: http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-%{version}.tar.gz
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Source2: %{name}-rpmlintrc
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Patch0: no-removal-of-suitesparse_config-output.patch
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Patch1: blas-instead-of-openblas-SuiteSparse_config_mk.patch
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Patch775418: bnc775418-enable-SuiteSparse_time-symbol.patch
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BuildRoot: %{_tmppath}/%{name}-%{version}-build
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BuildRequires: blas-devel
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BuildRequires: gcc-c++
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BuildRequires: gcc-fortran
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BuildRequires: lapack-devel
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%define amdver 2.4.1
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%define amdso 2_4_1
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%define btfver 1.2.1
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%define btfso 1_2_1
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%define camdver 2.4.1
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%define camdso 2_4_1
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%define ccolamdver 2.9.1
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%define ccolamdso 2_9_1
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%define colamdver 2.9.1
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%define colamdso 2_9_1
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%define cholmodver 3.0.6
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%define cholmodso 3_0_6
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%define csparsever 3.1.4
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%define csparseso 3_1_4
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%define cxsparsever 3.1.4
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%define cxsparseso 3_1_4
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%define kluver 1.3.3
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%define kluso 1_3_3
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%define ldlver 2.2.1
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%define ldlso 2_2_1
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%define rbiover 2.2.1
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%define rbioso 2_2_1
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%define spqrver 2.0.2
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%define spqrso 2_0_2
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%define umfpackver 5.7.1
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%define umfpackso 5_7_1
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BuildRequires: openmpi-devel
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BuildRequires: openblas-devel
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BuildRequires: metis-devel
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%define amdver 2.4.6
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%define amdso 2_4_6
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%define btfver 1.2.6
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%define btfso 1_2_6
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%define camdver 2.4.6
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%define camdso 2_4_6
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%define ccolamdver 2.9.6
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%define ccolamdso 2_9_6
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%define colamdver 2.9.6
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%define colamdso 2_9_6
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%define cholmodver 3.0.11
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%define cholmodso 3_0_11
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%define csparsever 3.1.9
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%define csparseso 3_1_9
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%define cxsparsever 3.1.9
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%define cxsparseso 3_1_9
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%define kluver 1.3.8
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%define kluso 1_3_8
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%define ldlver 2.2.6
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%define ldlso 2_2_6
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%define rbiover 2.2.6
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%define rbioso 2_2_6
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%define spqrver 2.0.8
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%define spqrso 2_0_8
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%define umfpackver 5.7.6
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%define umfpackso 5_7_6
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# Your need define even it's just the same as main package
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# or the %%build loop will override %%version with umfpack's version.
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%define configver 4.4.6
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%define configso 4_4_6
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%define configver 4.5.5
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%define configso 4_5_5
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%define amdlib libamd-%{amdso}
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%define btflib libbtf-%{btfso}
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%define camdlib libcamd-%{camdso}
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@ -86,6 +86,9 @@ matrices.
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Summary: Development headers for SuiteSparse
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License: GPL-2.0+ and LGPL-2.1+
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Group: Development/Libraries
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Requires: openmpi-devel
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Requires: openblas-devel
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Requires: metis-devel
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Requires: %{amdlib} = %{amdver}
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Requires: %{btflib} = %{btfver}
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Requires: %{camdlib} = %{camdver}
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@ -425,15 +428,12 @@ SuiteSparse_config is part of the SuiteSparse sparse matrix suite.
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%prep
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%setup -q -n SuiteSparse
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sed 's/^CHOLMOD_CONFIG =.*/CHOLMOD_CONFIG = -DNPARTITION/' -i SuiteSparse_config/SuiteSparse_config.mk
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sed 's/^\(METIS =\).*//' -i SuiteSparse_config/SuiteSparse_config.mk
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# bnc#751746
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rm -rf MATLAB_Tools/Factorize/Doc/factorize_article.pdf
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rm -rf SPQR/Doc/algo_spqr.pdf
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rm -rf SPQR/Doc/spqr.pdf
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# bnc#775418
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%patch0 -p1
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%patch1 -p1
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%patch775418 -p1
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%build
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@ -452,16 +452,22 @@ popd
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amd_libs="libsuitesparseconfig.so"
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camd_libs="libsuitesparseconfig.so"
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ccolamd_libs="libsuitesparseconfig.so"
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cholmod_libs="libamd.so libcamd.so libcolamd.so libccolamd.so libsuitesparseconfig.so -lblas -llapack"
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cholmod_libs="libamd.so libcamd.so libcolamd.so libccolamd.so libsuitesparseconfig.so -lopenblas -llapack -lmetis"
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colamd_libs="libsuitesparseconfig.so"
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klu_libs="libamd.so libbtf.so libcolamd.so"
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rbio_libs="libsuitesparseconfig.so"
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spqr_libs="libcholmod.so libsuitesparseconfig.so -lblas -llapack"
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umfpack_libs="libamd.so libcholmod.so libsuitesparseconfig.so -lblas -llapack"
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spqr_libs="libcholmod.so libsuitesparseconfig.so -lopenblas -llapack -lmetis"
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umfpack_libs="libamd.so libcholmod.so libsuitesparseconfig.so -lopenblas -llapack -lmetis"
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for dir in AMD BTF CAMD CCOLAMD COLAMD CHOLMOD CSparse CXSparse KLU LDL RBio SPQR UMFPACK; do
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pushd $dir
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ver=$(grep -E "^VERSION =" Makefile | sed "s:VERSION = ::")
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ver=$(grep -E "^VERSION =" Lib/Makefile | sed "s:VERSION = ::")
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if [[ -z $ver ]] ; then
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major=$(grep -oP "^\#define \w+_VER \d+" Include/*.h | sed -E "s:\#define [A-Z]+_VER ::")
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minor=$(grep -oP "^\#define \w+_SUBVER \d+" Include/*.h | sed -E "s:\#define [A-Z]+_SUBVER ::")
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patchlev=$(grep -oP "^\#define \w+_SUBSUB \d+" Include/*.h | sed -E "s:\#define [A-Z]+_SUBSUB ::")
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ver="$major.$minor.$patchlev"
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fi
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make CFLAGS="%{optflags} -fPIC"
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popd
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pushd Lib
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@ -475,11 +481,11 @@ done
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# specialities
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# -- CHOLMOD
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pushd CHOLMOD
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cp Cholesky/License.txt Doc/Cholesky_License.txt
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cp Core/License.txt Doc/Core_License.txt
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cp MatrixOps/License.txt Doc/MatrixOps_License.txt
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cp Partition/License.txt Doc/Partition_License.txt
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cp Supernodal/License.txt Doc/Supernodal_License.txt
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cp Cholesky/lesser.txt Doc/Cholesky_License.txt
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cp Core/lesser.txt Doc/Core_License.txt
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cp MatrixOps/gpl.txt Doc/MatrixOps_License.txt
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cp Partition/lesser.txt Doc/Partition_License.txt
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cp Supernodal/gpl.txt Doc/Supernodal_License.txt
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popd
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%install
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@ -492,7 +498,13 @@ cp -a README.txt %{buildroot}%{_docdir}/%{name}
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cp -a Lib/*.so* %{buildroot}/%{_libdir}
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for dir in AMD BTF CAMD CCOLAMD CHOLMOD COLAMD CSparse CXSparse KLU LDL RBio SPQR UMFPACK; do
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pushd $dir
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ver=$(grep -E "^VERSION =" Makefile | sed "s:VERSION = ::")
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ver=$(grep -E "^VERSION =" Lib/Makefile | sed "s:VERSION = ::")
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if [[ -z $ver ]] ; then
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major=$(grep -oP "^\#define \w+_VER \d+" Include/*.h | sed -E "s:\#define [A-Z]+_VER ::")
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minor=$(grep -oP "^\#define \w+_SUBVER \d+" Include/*.h | sed -E "s:\#define [A-Z]+_SUBVER ::")
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patchlev=$(grep -oP "^\#define \w+_SUBSUB \d+" Include/*.h | sed -E "s:\#define [A-Z]+_SUBSUB ::")
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ver="$major.$minor.$patchlev"
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fi
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cp -a Lib/*.a %{buildroot}/%{_libdir}
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cp -a Include/*\.h %{buildroot}%{_includedir}/%{name}
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if ls Include/*\.hpp 1> /dev/null 2>&1; then
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