Accepting request 894008 from home:bnavigator:branches:devel:languages:python:numeric

new requirement of spyder 5.0.3

OBS-URL: https://build.opensuse.org/request/show/894008
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python/python-Rtree?expand=0&rev=1

.gitattributes

@@ -0,0 +1,23 @@
+## Default LFS
+*.7z filter=lfs diff=lfs merge=lfs -text
+*.bsp filter=lfs diff=lfs merge=lfs -text
+*.bz2 filter=lfs diff=lfs merge=lfs -text
+*.gem filter=lfs diff=lfs merge=lfs -text
+*.gz filter=lfs diff=lfs merge=lfs -text
+*.jar filter=lfs diff=lfs merge=lfs -text
+*.lz filter=lfs diff=lfs merge=lfs -text
+*.lzma filter=lfs diff=lfs merge=lfs -text
+*.obscpio filter=lfs diff=lfs merge=lfs -text
+*.oxt filter=lfs diff=lfs merge=lfs -text
+*.pdf filter=lfs diff=lfs merge=lfs -text
+*.png filter=lfs diff=lfs merge=lfs -text
+*.rpm filter=lfs diff=lfs merge=lfs -text
+*.tbz filter=lfs diff=lfs merge=lfs -text
+*.tbz2 filter=lfs diff=lfs merge=lfs -text
+*.tgz filter=lfs diff=lfs merge=lfs -text
+*.ttf filter=lfs diff=lfs merge=lfs -text
+*.txz filter=lfs diff=lfs merge=lfs -text
+*.whl filter=lfs diff=lfs merge=lfs -text
+*.xz filter=lfs diff=lfs merge=lfs -text
+*.zip filter=lfs diff=lfs merge=lfs -text
+*.zst filter=lfs diff=lfs merge=lfs -text

.gitignore

@@ -0,0 +1 @@
+.osc

Rtree-0.9.7.tar.gz

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:be8772ca34699a9ad3fb4cfe2cfb6629854e453c10b3328039301bbfc128ca3e
+size 44877

Rtree-opensuse-noarch.patch

@@ -0,0 +1,95 @@
+diff -ur Rtree-0.9.7/setup.py Rtree-0.9.7.p/setup.py
+--- Rtree-0.9.7/setup.py	2020-12-24 16:38:19.000000000 +0100
++++ Rtree-0.9.7.p/setup.py	2021-05-18 00:48:04.350602925 +0200
+@@ -6,7 +6,6 @@
+ from setuptools.dist import Distribution
+ from setuptools.command.install import install
+ 
+-from wheel.bdist_wheel import bdist_wheel as _bdist_wheel
+ 
+ 
+ # Get text from README.txt
+@@ -21,74 +20,6 @@
+ # current working directory of this setup.py file
+ _cwd = os.path.abspath(os.path.split(__file__)[0])
+ 
+-
+-class bdist_wheel(_bdist_wheel):
+-    def finalize_options(self):
+-        _bdist_wheel.finalize_options(self)
+-        self.root_is_pure = False
+-
+-
+-class BinaryDistribution(Distribution):
+-    """Distribution which always forces a binary package with platform name"""
+-    def has_ext_modules(foo):
+-        return True
+-
+-
+-class InstallPlatlib(install):
+-    def finalize_options(self):
+-        """
+-        Copy the shared libraries into the wheel. Note that this
+-        will *only* check in `rtree/lib` rather than anywhere on
+-        the system so if you are building a wheel you *must* copy or
+-        symlink the `.so`/`.dll`/`.dylib` files into `rtree/lib`.
+-        """
+-        # use for checking extension types
+-        from fnmatch import fnmatch
+-
+-        install.finalize_options(self)
+-        if self.distribution.has_ext_modules():
+-            self.install_lib = self.install_platlib
+-        # now copy over libspatialindex
+-        # get the location of the shared library on the filesystem
+-
+-        # where we're putting the shared library in the build directory
+-        target_dir = os.path.join(self.build_lib, 'rtree', 'lib')
+-        # where are we checking for shared libraries
+-        source_dir = os.path.join(_cwd, 'rtree', 'lib')
+-
+-        # what patterns represent shared libraries
+-        patterns = {'*.so',
+-                    'libspatialindex*dylib',
+-                    '*.dll'}
+-
+-        if not os.path.isdir(source_dir):
+-            # no copying of binary parts to library
+-            # this is so `pip install .` works even
+-            # if `rtree/lib` isn't populated
+-            return
+-
+-        for file_name in os.listdir(source_dir):
+-            # make sure file name is lower case
+-            check = file_name.lower()
+-            # use filename pattern matching to see if it is
+-            # a shared library format file
+-            if not any(fnmatch(check, p) for p in patterns):
+-                continue
+-
+-            # if the source isn't a file skip it
+-            if not os.path.isfile(os.path.join(source_dir, file_name)):
+-                continue
+-
+-            # make build directory if it doesn't exist yet
+-            if not os.path.isdir(target_dir):
+-                os.makedirs(target_dir)
+-
+-            # copy the source file to the target directory
+-            self.copy_file(
+-                os.path.join(source_dir, file_name),
+-                os.path.join(target_dir, file_name))
+-
+-
+ setup(
+     name='Rtree',
+     version=__version__,
+@@ -105,8 +36,6 @@
+     package_data={"rtree": ['lib']},
+     zip_safe=False,
+     include_package_data=True,
+-    distclass=BinaryDistribution,
+-    cmdclass={'bdist_wheel': bdist_wheel, 'install': InstallPlatlib},
+     classifiers=[
+         'Development Status :: 5 - Production/Stable',
+         'Intended Audience :: Developers',

python-Rtree-rpmlintrc

@@ -0,0 +1,2 @@
+# pure python package does not link but access it via ctypes
+addFilter("explicit-lib-dependency libspatialindex")

python-Rtree.changes

@@ -0,0 +1,7 @@
+-------------------------------------------------------------------
+Mon May 17 22:22:43 UTC 2021 - Ben Greiner <code@bnavigator.de>
+
+- initial specfile for 0.9.7
+- New requirement for spyder 5.0.3
+- add Rtree-opensuse-noarch.patch: we don't put spatialindex into a
+  wheel, so the module is kept pure.

python-Rtree.spec

@@ -0,0 +1,75 @@
+#
+# spec file for package python-Rtree
+#
+# Copyright (c) 2021 SUSE LLC
+#
+# All modifications and additions to the file contributed by third parties
+# remain the property of their copyright owners, unless otherwise agreed
+# upon. The license for this file, and modifications and additions to the
+# file, is the same license as for the pristine package itself (unless the
+# license for the pristine package is not an Open Source License, in which
+# case the license is the MIT License). An "Open Source License" is a
+# license that conforms to the Open Source Definition (Version 1.9)
+# published by the Open Source Initiative.
+
+# Please submit bugfixes or comments via https://bugs.opensuse.org/
+#
+
+
+%{?!python_module:%define python_module() python-%{**} python3-%{**}}
+%define skip_python36 1
+Name:           python-Rtree
+Version:        0.9.7
+Release:        0
+Summary:        R-Tree spatial index for Python GIS
+License:        MIT
+URL:            https://github.com/Toblerity/rtree
+Source:         https://files.pythonhosted.org/packages/source/R/Rtree/Rtree-%{version}.tar.gz
+Source99:       python-Rtree-rpmlintrc
+# PATCH-FIX-OPENSUSE Rtree-opensuse-noarch.patch -- we don't put spatialindex into a wheel so the module is kept pure. <code@bnavigator.de>
+Patch0:         Rtree-opensuse-noarch.patch
+BuildRequires:  %{python_module numpy}
+BuildRequires:  %{python_module pytest}
+BuildRequires:  %{python_module setuptools}
+BuildRequires:  fdupes
+BuildRequires:  libspatialindex4
+BuildRequires:  python-rpm-macros
+Requires:       libspatialindex4
+Provides:       python-rtree = %{version}-%{release}
+BuildArch:      noarch
+%python_subpackages
+
+%description
+A ctypes Python wrapper of libspatialindex that provides a number of advanced
+spatial indexing features for the spatially curious Python user.
+
+* Nearest neighbor search
+* Intersection search
+* Multi-dimensional indexes
+* Clustered indexes (store Python pickles directly with index entries)
+* Bulk loading
+* Deletion
+* Disk serialization
+* Custom storage implementation (to implement spatial indexing in ZODB,
+  for example)
+
+%prep
+%autosetup -p1 -n Rtree-%{version}
+
+%build
+%python_build
+
+%install
+%python_install
+%python_expand %fdupes %{buildroot}%{$python_sitelib}
+
+%check
+%pytest
+
+%files %{python_files}
+%doc README.md
+%license LICENSE.txt
+%{python_sitelib}/rtree
+%{python_sitelib}/Rtree-%{version}*-info
+
+%changelog