forked from pool/python-pydicom
Dirk Mueller
b14ea9eb46
- Skip a lot of tests, mostly due to missing test data, but there are over 1900 still passing. - Update to v2.3.0 * See https://github.com/pydicom/pydicom/tree/master/doc/release_notes OBS-URL: https://build.opensuse.org/request/show/1005690 OBS-URL: https://build.opensuse.org/package/show/devel:languages:python/python-pydicom?expand=0&rev=21
115 lines
4.8 KiB
RPMSpec
115 lines
4.8 KiB
RPMSpec
#
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# spec file for package python-pydicom
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#
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# Copyright (c) 2022 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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%{?!python_module:%define python_module() python-%{**} python3-%{**}}
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%define oldpython python
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Name: python-pydicom
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Version: 2.3.0
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Release: 0
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Summary: Pure python package for DICOM medical file reading and writing
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License: MIT
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URL: https://github.com/darcymason/pydicom
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Source: https://files.pythonhosted.org/packages/source/p/pydicom/pydicom-%{version}.tar.gz
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BuildRequires: %{python_module setuptools}
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BuildRequires: fdupes
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BuildRequires: python-rpm-macros
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# SECTION test requirements
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BuildRequires: %{python_module numpy}
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BuildRequires: %{python_module Pillow}
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BuildRequires: %{python_module pytest}
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BuildRequires: %{python_module requests}
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BuildRequires: python3-gdcm
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# /SECTION
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BuildArch: noarch
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%ifpython2
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Obsoletes: %{oldpython}-dicom < %{version}
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Provides: %{oldpython}-dicom = %{version}
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%endif
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Requires(post): update-alternatives
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Requires(postun): update-alternatives
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%python_subpackages
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%description
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pydicom is a pure python package for parsing DICOM files
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into natural pythonic structures for further manipulation.
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Modified datasets can be written again to DICOM format files.
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DICOM is a standard (http://medical.nema.org) for communicating
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medical images and related information such as reports
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and radiotherapy objects.
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%prep
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%setup -q -n pydicom-%{version}
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%build
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%python_build
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%install
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%python_install
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%python_clone -a %{buildroot}%{_bindir}/pydicom
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%python_expand rm -r %{buildroot}%{$python_sitelib}/pydicom/{benchmarks,tests,data/test_files}
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%python_expand %fdupes %{buildroot}%{$python_sitelib}
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%check
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export LANG=en_US.UTF-8
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# Many test modules and individual tests fail due to test data not included in sdist
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# And requires https://github.com/pydicom/pydicom-data , which hasnt been
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# packaged yet. c.f. https://github.com/pydicom/pydicom-data/issues/9
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skips="test_fetch_data_files or test_reading_ds_with_known_tags_with_UN_VR or test_empty_bot_multi_fragments_per_frame"
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skips="$skips or test_convert_rgb_from_implicit_to_explicit_vr or test_empty_bot_too_few_fragments or test_encapsulate"
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skips="$skips or test_sequence_with_implicit_vr or test_rgb_ybr_rgb_single_frame or test_rgb_ybr_rgb_multi_frame or test_frame_by_frame"
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skips="$skips or test_specific_tags_with_unknown_length_tag or test_tag_with_unknown_length_tag_too_short or test_planar_config"
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skips="$skips or test_correct_ambiguous_vr_compressed or test_write_removes_grouplength or test_raw_elements_preserved_explicit_vr"
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skips="$skips or test_cycle_u8_1s_1f or test_encoders_gdcm or test_unsupported_syntax_raises or test_can_access_unsupported_dataset"
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skips="$skips or TestDatasetOverlayArray or TestGDCM_JPEG_LS_no_gdcm or TestGDCM_JPEG2000_no_gdcm or TestGDCM_JPEGlossy_no_gdcm"
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skips="$skips or TestGDCM_JPEGlossless_no_gdcm or TestEncodeFrame or TestEncodeSegment or TestRLEEncodeFrame or TestNumpy_ModalityLUT"
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skips="$skips or TestNumpy_PaletteColor or TestNumpy_ApplyWindowing or TestNumpy_ApplyVOI or (TestNumpy_PackBits and test_functional)"
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skips="$skips or TestNumpy_NumpyHandler or TestNumpy_GetOverlayArray or TestNumpy_NoRLEHandler or TestNumpy_RLEHandler"
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skips="$skips or TestPillowHandler_JPEG2K or TestPillowHandler_JPEG"
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# Failures only on ppc64
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skips="$skips or test_invalid_arr_dtype_raises or TestHandlerGenerateMultiplex or TestHandlerMultiplexArray"
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# Failures only on i586
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skips="$skips or test_write_file_id or test_file_id"
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# The ignores cause failure during test collection
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%{pytest -rs pydicom/tests \
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--ignore pydicom/tests/test_JPEG_LS_transfer_syntax.py \
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--ignore pydicom/tests/test_dataset.py \
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--ignore pydicom/tests/test_gdcm_pixel_data.py \
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--ignore pydicom/tests/test_jpeg_ls_pixel_data.py \
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--ignore pydicom/tests/test_JPEG_LS_transfer_syntax.py \
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--ignore pydicom/tests/test_jpeg_ls_pixel_data.py \
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--ignore pydicom/tests/test_numpy_pixel_data.py \
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-k "not ($skips)"
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}
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%post
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%python_install_alternative pydicom
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%postun
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%python_uninstall_alternative pydicom
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%files %{python_files}
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%doc README.md
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%license LICENSE
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%python_alternative %{_bindir}/pydicom
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%{python_sitelib}/pydicom*
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%changelog
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