diff --git a/_multibuild b/_multibuild new file mode 100644 index 0000000..49fb912 --- /dev/null +++ b/_multibuild @@ -0,0 +1,3 @@ + + test + diff --git a/concatenated.fastq.gz b/concatenated.fastq.gz new file mode 100644 index 0000000..2ff8b89 --- /dev/null +++ b/concatenated.fastq.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cb22726d477bafe5b6f8bab6a48e160944580e6697efe805513ba8a33b372747 +size 92680 diff --git a/python-zlib-ng.changes b/python-zlib-ng.changes index 828d8f3..4a7cb60 100644 --- a/python-zlib-ng.changes +++ b/python-zlib-ng.changes @@ -1,3 +1,33 @@ +------------------------------------------------------------------- +Tue Feb 6 20:48:05 UTC 2024 - Ben Greiner + +- Update to 0.4.0 + * Add a gzip_ng_threaded module that contains the + gzip_ng_threaded.open function. This allows using multithreaded + compression as well as escaping the GIL. + * The internal gzip_ng._GzipReader has been rewritten in C. As a + result the overhead of decompressing files has significantly + been reduced. + * The gzip_ng._GzipReader in C is now used in gzip_ng.decompress. + The _GzipReader also can read from objects that support the + buffer protocol. This has reduced overhead significantly. + * Fix some unclosed buffer errors in the gzip_ng CLI. +- Version 0.3.0 + * Source distributions on Linux now default to building with + configure and make as it is faster and has less dependencies + than CMake. + * Python 3.12 support was added. Python 3.7 support was dropped + as it is end of life. + * Update embedded zlib-ng version to 2.1.5. This comes with some + speed improvements and changes with regards to the compression + levels. Also several bugs were fixed. For full details checkout + the zlib-ng 2.1.2 release notes as well as those for the bugfix + releases 2.1.3, 2.1.4 and 2.1.5. +- Fix BuildRequirements. This one never used poetry. +- Enable tests in multibuild: some tests call python3.X -m zlib_ng + without respecting the PYTHONPATH from %pytest_arch. +- Link to system library + ------------------------------------------------------------------- Wed Dec 6 10:25:00 UTC 2023 - Adrian Schröter diff --git a/python-zlib-ng.spec b/python-zlib-ng.spec index fcded84..1d32714 100644 --- a/python-zlib-ng.spec +++ b/python-zlib-ng.spec @@ -1,7 +1,7 @@ # # spec file for package python-zlib-ng # -# Copyright (c) 2017 SUSE LINUX GmbH, Nuernberg, Germany. +# Copyright (c) 2024 SUSE LLC # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed @@ -12,26 +12,44 @@ # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. -# Please submit bugfixes or comments via http://bugs.opensuse.org/ +# Please submit bugfixes or comments via https://bugs.opensuse.org/ +# -%{?!python_module:%define python_module() python-%{**} python3-%{**}} -Name: python-zlib-ng -Version: 0.2.0 +%global flavor @BUILD_FLAVOR@%{nil} +%if "%{flavor}" == "test" +%define psuffix -test +%bcond_without test +%else +%define psuffix %{nil} +%bcond_with test +%endif + +Name: python-zlib-ng%{psuffix} +Version: 0.4.0 Release: 0 -License: MIT +License: Python-2.0 Summary: Faster zlib and gzip compatible compression and decompression Group: Development/Languages/Python -Url: https://github.com/pycompression/python-zlib-ng -Source: https://files.pythonhosted.org/packages/source/z/zlib-ng/zlib-ng-%{version}.tar.gz -BuildRequires: %{python_module devel} -BuildRequires: %{python_module poetry} -BuildRequires: %{python_module wheel} +URL: https://github.com/pycompression/python-zlib-ng +Source0: https://files.pythonhosted.org/packages/source/z/zlib-ng/zlib-ng-%{version}.tar.gz +Source1: https://github.com/pycompression/python-zlib-ng/raw/v%{version}/tests/data/concatenated.fastq.gz +Source2: https://github.com/pycompression/python-zlib-ng/raw/v%{version}/tests/data/seeds.txt +Source3: https://github.com/pycompression/python-zlib-ng/raw/v%{version}/tests/data/test.fastq.bgzip.gz +Source4: https://github.com/pycompression/python-zlib-ng/raw/v%{version}/tests/data/test.fastq.gz +BuildRequires: %{python_module devel >= 3.8} BuildRequires: %{python_module pip} -BuildRequires: cmake +BuildRequires: %{python_module setuptools} +BuildRequires: %{python_module wheel} BuildRequires: fdupes -BuildRequires: zlib-ng-devel BuildRequires: python-rpm-macros +BuildRequires: zlib-ng-devel +Provides: python-zlib_ng = %{version}-%{release} +%if %{with test} +BuildRequires: %{python_module pytest} +BuildRequires: %{python_module testsuite} +BuildRequires: %{python_module zlib-ng = %{version}} +%endif %python_subpackages %description @@ -39,20 +57,34 @@ Faster zlib and gzip compatible compression and decompression by providing Pytho This package provides Python bindings for the zlib-ng library. - %prep %setup -q -n zlib-ng-%{version} +mkdir tests/data +cp %{SOURCE1} %{SOURCE2} %{SOURCE3} %{SOURCE4} tests/data/ %build +%if !%{with test} +export PYTHON_ZLIB_NG_LINK_DYNAMIC=1 %pyproject_wheel - -%install -%pyproject_install -%python_expand %fdupes %{buildroot}%{$python_sitelib} +%endif +%install +%if !%{with test} +%pyproject_install +%python_expand %fdupes %{buildroot}%{$python_sitearch} +%endif + +%if %{with test} +%check +%pytest_arch +%endif + +%if !%{with test} %files %{python_files} %license LICENSE %doc README.rst -%{python_sitearch}/* +%{python_sitearch}/zlib_ng +%{python_sitearch}/zlib_ng-%{version}.dist-info +%endif %changelog diff --git a/seeds.txt b/seeds.txt new file mode 100644 index 0000000..0df5318 --- /dev/null +++ b/seeds.txt @@ -0,0 +1,100 @@ +3543943125 +2012239574 +2871899840 +1576915383 +443567851 +3239180423 +3373382826 +3275169686 +3720569364 +2789290573 +618407468 +3601134391 +257166085 +951339096 +688447921 +2980268332 +4041231849 +2665838137 +2152080166 +3061402473 +114075645 +1066757169 +3059147274 +246562262 +3880192386 +4271112646 +3614603334 +3491130170 +332943583 +1921692081 +159629030 +4169931400 +641090334 +2429776133 +152825723 +2237958331 +2779470898 +872209389 +1543398313 +227922013 +1433480097 +2411689409 +4285411687 +2669236754 +2315690542 +2593947855 +2435538281 +640615264 +2183831503 +2141774460 +498759490 +1981068107 +659087394 +644660319 +4084740067 +306553019 +4172422758 +761521931 +2820900477 +160799031 +3875345091 +1347385004 +2312301814 +404607200 +2258507054 +1861096434 +3113292015 +1063461481 +3623153239 +11376533 +1748307784 +1185247326 +1030491484 +3925346575 +4212727269 +4234599042 +4019013354 +3237401702 +1335471143 +3405720069 +4119823939 +1476030215 +1339973082 +3541240200 +608243180 +4149852723 +3655893277 +2099999624 +3547173299 +860208608 +4254465956 +603882225 +1785239865 +3260029982 +83829029 +3136481952 +2052207849 +1971968310 +2157083216 +3415051802 diff --git a/test.fastq.bgzip.gz b/test.fastq.bgzip.gz new file mode 100644 index 0000000..24d949d --- /dev/null +++ b/test.fastq.bgzip.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:95c770e328b56169ab48a3f1681dca55719924409b2e3d3b24a6e74d8bce6d5b +size 1556539 diff --git a/test.fastq.gz b/test.fastq.gz new file mode 100644 index 0000000..233d5db --- /dev/null +++ b/test.fastq.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:110fd6cd976092bb0fee2a828c9aeb7a03224c4428a1438b02a6b590e4759a68 +size 1660692 diff --git a/zlib-ng-0.2.0.tar.gz b/zlib-ng-0.2.0.tar.gz deleted file mode 100644 index c7359de..0000000 --- a/zlib-ng-0.2.0.tar.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:2b23707cb7e5bf27afd8422d290f68e82185af69741bde60914f18d16fb66e9b -size 905929 diff --git a/zlib-ng-0.4.0.tar.gz b/zlib-ng-0.4.0.tar.gz new file mode 100644 index 0000000..f69d140 --- /dev/null +++ b/zlib-ng-0.4.0.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3b730881aaeb86f9a4995de5e22499406ccf92f8508b5c017c343d27570a8c0a +size 2458999