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* Update to version 2.5.2.

Browse Source 
* Add _service file to fetch sources from git to allow submodules to be included in tarball.
* Add patches to fix build: cadabra2-cmake-correct-python-variable.patch, cadabra2-use-system-pybind11.patch, cadabra2-link-gmp.patch.
* Drop cadabra2-link-python.patch: upstreamed.
* Drop use of %suse_update_desktop_file: no longer needed.
* Drop appdata file included as Source1, bundled files are now installed correctly.
* Use python-rpm-macros and setup to build with newer pythons on Leap 15.X (does not yet work due to unavailability of python311-sympy and python311-ipykernel on these distros).

OBS-URL: https://build.opensuse.org/package/show/science/cadabra2?expand=0&rev=60
This commit is contained in:
Atri Bhattacharya 2024-08-17 05:14:25 +00:00 committed by Git OBS Bridge
commit cf94860cd3
15 changed files with 999 additions and 0 deletions
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## Default LFS
*.7z filter=lfs diff=lfs merge=lfs -text
*.bsp filter=lfs diff=lfs merge=lfs -text
*.bz2 filter=lfs diff=lfs merge=lfs -text
*.gem filter=lfs diff=lfs merge=lfs -text
*.gz filter=lfs diff=lfs merge=lfs -text
*.jar filter=lfs diff=lfs merge=lfs -text
*.lz filter=lfs diff=lfs merge=lfs -text
*.lzma filter=lfs diff=lfs merge=lfs -text
*.obscpio filter=lfs diff=lfs merge=lfs -text
*.oxt filter=lfs diff=lfs merge=lfs -text
*.pdf filter=lfs diff=lfs merge=lfs -text
*.png filter=lfs diff=lfs merge=lfs -text
*.rpm filter=lfs diff=lfs merge=lfs -text
*.tbz filter=lfs diff=lfs merge=lfs -text
*.tbz2 filter=lfs diff=lfs merge=lfs -text
*.tgz filter=lfs diff=lfs merge=lfs -text
*.ttf filter=lfs diff=lfs merge=lfs -text
*.txz filter=lfs diff=lfs merge=lfs -text
*.whl filter=lfs diff=lfs merge=lfs -text
*.xz filter=lfs diff=lfs merge=lfs -text
*.zip filter=lfs diff=lfs merge=lfs -text
*.zst filter=lfs diff=lfs merge=lfs -text

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.osc

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<constraints>
<hardware>
<memory>
<size unit="G">4</size>
</memory>
</hardware>
</constraints>

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<?xml version="1.0"?>
<services>
<service name="obs_scm" mode="manual">
<param name="url">https://github.com/kpeeters/cadabra2.git</param>
<param name="scm">git</param>
<param name="revision">2.5.4</param>
<param name="versionformat">@PARENT_TAG@</param>
<param name="filename">cadabra2</param>
<param name="submodules">enable</param>
</service>
<service name="tar" mode="buildtime"/>
<service name="recompress" mode="buildtime">
<param name="file">*.tar</param>
<param name="compression">xz</param>
</service>
<service name="set_version" mode="buildtime"/>
</services>

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version https://git-lfs.github.com/spec/v1
oid sha256:9a3ebe3debd6efdd5f20a3c78acc2ef8933135d5f43da39b6ea107be94a9413c
size 26827151

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version https://git-lfs.github.com/spec/v1
oid sha256:f130d667383d2504e4b36f468684b86f01730a86051d98d65409f0635e35e3ac
size 87038478

86
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Index: cadabra2-2.5.4/CMakeLists.txt
===================================================================
--- cadabra2-2.5.4.orig/CMakeLists.txt
+++ cadabra2-2.5.4/CMakeLists.txt
@@ -325,7 +325,7 @@ else()
# calling into python's 'site' package (and hoping that the 0th
# element is where we should be writing).
execute_process(
- COMMAND ${PYTHON_EXECUTABLE} -c "import site; print(site.getsitepackages()[0])"
+ COMMAND ${Python_EXECUTABLE} -c "import site; print(site.getsitepackages()[0])"
OUTPUT_VARIABLE PYTHON_SITE_PATH
OUTPUT_STRIP_TRAILING_WHITESPACE
)
@@ -339,7 +339,7 @@ message(STATUS "Installing Python module
# contain the abi name. See
# https://www.python.org/dev/peps/pep-3149/
execute_process(
- COMMAND ${PYTHON_EXECUTABLE} -c "import sysconfig; print(sysconfig.get_config_var('SOABI'))"
+ COMMAND ${Python_EXECUTABLE} -c "import sysconfig; print(sysconfig.get_config_var('SOABI'))"
OUTPUT_VARIABLE PYTHON_SOABI
OUTPUT_STRIP_TRAILING_WHITESPACE
)
@@ -350,7 +350,7 @@ set(PYTHON_SITE_PATH_REL ${PYTHON_SITE_P
if(NOT WIN32)
execute_process(
- COMMAND ${PYTHON_EXECUTABLE} -c "import site; print (site.getsitepackages()[0]);"
+ COMMAND ${Python_EXECUTABLE} -c "import site; print (site.getsitepackages()[0]);"
OUTPUT_VARIABLE OLDER_PYTHON_SITE_PATH
OUTPUT_STRIP_TRAILING_WHITESPACE
)
Index: cadabra2-2.5.4/core/cadabra2.in
===================================================================
--- cadabra2-2.5.4.orig/core/cadabra2.in
+++ cadabra2-2.5.4/core/cadabra2.in
@@ -1,4 +1,4 @@
-#!${PYTHON_EXECUTABLE}
+#!${Python_EXECUTABLE}
#
# \ingroup pythoncore
#
@@ -119,8 +119,8 @@ if __name__ == '__main__':
if len(sys.argv)>1:
if '-d' in sys.argv:
- #rs = "lldb -ex r --args ${PYTHON_EXECUTABLE} "+sys.argv[0];
- rs = "gdb -q -ex r --args ${PYTHON_EXECUTABLE} "+sys.argv[0];
+ #rs = "lldb -ex r --args ${Python_EXECUTABLE} "+sys.argv[0];
+ rs = "gdb -q -ex r --args ${Python_EXECUTABLE} "+sys.argv[0];
for a in sys.argv[1:]:
if a!='-d':
rs += " "+a
Index: cadabra2-2.5.4/jupyterkernel/kernelspec/kernel.json.in
===================================================================
--- cadabra2-2.5.4.orig/jupyterkernel/kernelspec/kernel.json.in
+++ cadabra2-2.5.4/jupyterkernel/kernelspec/kernel.json.in
@@ -1,6 +1,6 @@
{
"argv": [
- "@PYTHON_EXECUTABLE@", "-m", "cadabra2_jupyter", "-f", "{connection_file}"
+ "@Python_EXECUTABLE@", "-m", "cadabra2_jupyter", "-f", "{connection_file}"
],
"display_name":"Cadabra2",
"language":"python"
Index: cadabra2-2.5.4/tests/CMakeLists.txt
===================================================================
--- cadabra2-2.5.4.orig/tests/CMakeLists.txt
+++ cadabra2-2.5.4/tests/CMakeLists.txt
@@ -49,7 +49,7 @@ foreach(NBTEST ${NBTESTS})
ARGS ${CNBIN}/${NBTEST}.cnb ${CDBOUT}/${NBTEST}.cdb
COMMENT "Creating ${NBTEST} notebook...")
add_custom_target("${NBTEST}_test" ALL DEPENDS ${CDBOUT}/${NBTEST}.cdb)
- add_test(${NBTEST} ${PYTHON_EXECUTABLE} ${CMAKE_SOURCE_DIR}/core/cadabra2 ${CDBOUT}/${NBTEST}.cdb)
+ add_test(${NBTEST} ${Python_EXECUTABLE} ${CMAKE_SOURCE_DIR}/core/cadabra2 ${CDBOUT}/${NBTEST}.cdb)
set_tests_properties(${NBTEST} PROPERTIES ENVIRONMENT "PYTHONPATH=${PYTHONPATH};LANG=en_US.UTF-8;LC_ALL=en_US.UTF-8;PYTHONIOENCODING=utf-8")
endforeach()
@@ -100,7 +100,7 @@ if(MATHEMATICA_FOUND)
set(RTESTS ${RTESTS} mma)
endif()
foreach(RTEST ${RTESTS})
- add_test(${RTEST} ${PYTHON_EXECUTABLE} ${CMAKE_SOURCE_DIR}/core/cadabra2 ${CMAKE_SOURCE_DIR}/tests/${RTEST}.cdb)
+ add_test(${RTEST} ${Python_EXECUTABLE} ${CMAKE_SOURCE_DIR}/core/cadabra2 ${CMAKE_SOURCE_DIR}/tests/${RTEST}.cdb)
# We need to set the Python path so that we pick up the correct cadabra2.so Python module
# even if we did not do 'make install' yet.
set_tests_properties(${RTEST} PROPERTIES ENVIRONMENT "PYTHONPATH=${PYTHONPATH};LANG=en_US.UTF-8;LC_ALL=en_US.UTF-8;PYTHONIOENCODING=utf-8")

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Index: cadabra2-2.3.9.3/tests/CMakeLists.txt
===================================================================
--- cadabra2-2.3.9.3.orig/tests/CMakeLists.txt
+++ cadabra2-2.3.9.3/tests/CMakeLists.txt
@@ -69,7 +69,6 @@ set(RTESTS
trigonometric
noncovariant
algebra
- components
factor
field_theory
gamma_paper

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<?xml version='1.0' encoding='UTF-8'?>
<component>
<id>cadabra2-gtk.desktop</id>
<metadata_license>CC0-1.0</metadata_license>
<name>Cadabra 2</name>
<project_license>GPL-3.0+</project_license>
<summary>A computer algebra system for problems in field theory</summary>
<url type="homepage">http://cadabra.science/</url>
<description>
<p>Cadabra2 is a computer algebra system (CAS) designed specifically for
the solution of problems encountered in field theory.</p>
<p>It has been designed specifically for the solution of problems encountered
in quantum and classical field theory. It has extensive functionality
for tensor computer algebra, tensor polynomial simplification
including multi-term symmetries, fermions and anti-commuting
variables, Clifford algebras and Fierz transformations, implicit
coordinate dependence, multiple index types and many more. The input
format is a subset of TeX.</p>
</description>
<screenshots>
<screenshot type="default">
<image height="1440" width="1192">https://cadabra.science/static/images/screenshot.png</image>
<caption>Gamma matrix algebra in a Cadabra2 notebook</caption>
</screenshot>
</screenshots>
<update_contact>info@cadabra.science</update_contact>
</component>

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Index: cadabra2-2.5.4/core/packages/CMakeLists.txt
===================================================================
--- cadabra2-2.5.4.orig/core/packages/CMakeLists.txt
+++ cadabra2-2.5.4/core/packages/CMakeLists.txt
@@ -67,7 +67,7 @@ foreach(PACKAGE ${COMPILED_PACKAGES})
set_target_properties(${PNAME} PROPERTIES SUFFIX ".${PYTHON_MOD_SUFFIX}")
set_target_properties(${PNAME} PROPERTIES INSTALL_RPATH "$ORIGIN/../../:$ORIGIN/../../../../")
- target_link_libraries(${PNAME} PUBLIC cadabra2 ${GMPXX_LIBRARIES})
+ target_link_libraries(${PNAME} PUBLIC cadabra2 ${GMPXX_LIBRARIES} ${GMP_LIBRARIES})
target_include_directories(${PNAME} PUBLIC ${CADABRA_CORE_DIR})
if(IPO_SUPPORTED)

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Index: cadabra2-2.4.5.6/core/CMakeLists.txt
===================================================================
--- cadabra2-2.4.5.6.orig/core/CMakeLists.txt
+++ cadabra2-2.4.5.6/core/CMakeLists.txt
@@ -294,7 +294,7 @@ target_link_libraries(cadabra2 PRIVATE
${GMPXX_LIBRARIES}
${GMP_LIBRARIES}
${Boost_LIBRARIES}
-# ${PYTHON_LIBRARIES}
+ ${PYTHON_LIBRARIES}
# ${GLIBMM3_LIBRARIES}
)
Index: cadabra2-2.4.5.6/core/packages/CMakeLists.txt
===================================================================
--- cadabra2-2.4.5.6.orig/core/packages/CMakeLists.txt
+++ cadabra2-2.4.5.6/core/packages/CMakeLists.txt
@@ -66,8 +66,7 @@ foreach(PACKAGE ${COMPILED_PACKAGES})
set_target_properties(${PNAME} PROPERTIES RUNTIME_OUTPUT_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}/cdb/${PINSTALL}")
set_target_properties(${PNAME} PROPERTIES LIBRARY_OUTPUT_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}/cdb/${PINSTALL}")
set_target_properties(${PNAME} PROPERTIES SUFFIX ".${PYTHON_MOD_SUFFIX}")
-
- target_link_libraries(${PNAME} PUBLIC cadabra2 ${GMPXX_LIBRARIES})
+ target_link_libraries(${PNAME} PUBLIC cadabra2 ${PYTHON_LIBRARIES} ${GMPXX_LIBRARIES} ${GMP_LIBRARIES})
target_include_directories(${PNAME} PUBLIC ${CADABRA_CORE_DIR})
if(IPO_SUPPORTED)

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---
CMakeLists.txt | 7 ++++++-
1 file changed, 6 insertions(+), 1 deletion(-)
Index: cadabra2-2.5.4/CMakeLists.txt
===================================================================
--- cadabra2-2.5.4.orig/CMakeLists.txt
+++ cadabra2-2.5.4/CMakeLists.txt
@@ -297,7 +297,10 @@ set(PYTHON_POSTFIX "3")
# message(STATUS "Building for use with Python 3 (good!)")
find_package(Python COMPONENTS Interpreter Development)
-add_subdirectory(libs/pybind11)
+find_package(pybind11 CONFIG)
+if (NOT pybind11_FOUND)
+ add_subdirectory(libs/pybind11)
+endif()
message(STATUS "Found python ${PYTHON_LIBRARIES}")
#find_package (Python COMPONENTS Interpreter)

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-------------------------------------------------------------------
Mon Aug 12 04:32:18 UTC 2024 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.5.2:
* Fix simplification of pow nodes.
* Make ExNode iterators skip nodes hidden by zoom.
* Fix canonicalise acting on expressions with
self-anticommuting objects and derivatives.
* Fix crash when comparing with empty expressions.
* Make zoom accept a list of patterns.
* Fix bugs in getting Weight values from Python, and setting
multipliers in Python.
* Add LaTeXString object to display LaTeX formatted strings on
capable frontends.
* Fix a bug with canonicalise acting on vector-spinor objects.
* Enable the use of Unicode greek characters as input (which
will get converted to LaTeX automatically) to enable
cut-n-paste in the terminal.
* Fix handling of multi-line expressions (newlines now count as
a whitespace).
* Fix canonicalise to allow for factors which are sums, as long
as these do not have indices.
* Ability to use builtin MicroTeX for typesetting (the default
in 2.5.x), which removes the requirement to have a LaTeX
installation.
* Experimental AppImages now available for Linux on both x86-64
and aarch64 architectures.
* Removed deprecated GTK-3 features and cleaned up the UI.
* Fix bug in code to interrupt a running computation.
* Added dynamical cell updates, e.g. to create animations.
- Add _service file to fetch sources from git to allow submodules
to be included in tarball.
- Add patches to fix build:
* cadabra2-cmake-correct-python-variable.patch: Use correct
variable from FindPython, i.e. Python_EXECUTABLE, not
PYTHON_EXECUTABLE (gh#kpeeters/cadabra2#309).
* cadabra2-use-system-pybind11.patch: Allow use of system
pybind11 (gh#kpeeters/cadabra2#310).
* cadabra2-link-gmp.patch: Explicitly link to gmp library.
- Drop cadabra2-link-python.patch: upstreamed.
- Drop use of %suse_update_desktop_file: no longer needed.
- Drop appdata file included as Source1, bundled files are now
installed correctly.
- Use python-rpm-macros and setup to build with newer pythons on
Leap 15.X (does not yet work due to unavailability of
python311-sympy and python311-ipykernel on these distros).
-------------------------------------------------------------------
Thu Apr 18 19:37:14 UTC 2024 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.4.5.6:
* Allow setting PYTHON_SITE_PATH manually.
-------------------------------------------------------------------
Thu Jan 25 18:20:58 UTC 2024 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.4.5.4:
* Improvements to the zoom algorithm.
* Bug fixes.
- Require python3 >= 3.8.
-------------------------------------------------------------------
Sun Sep 17 10:51:15 UTC 2023 - Atri Bhattacharya <badshah400@gmail.com>
- Make examples and doc packages noarch.
-------------------------------------------------------------------
Sun Sep 10 21:57:56 UTC 2023 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.4.4.1:
* Update to fix issues with pybind11 and to avoid cmake
warnings.
- Drop testing on 32-bit systems due to tolerance errors in a
test (gh#kpeeters/cadabra2#280).
-------------------------------------------------------------------
Wed Dec 7 08:00:00 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.4.3.2:
* Add missing canonicalisation of rationals when simplifying
powers.
-------------------------------------------------------------------
Tue Dec 6 12:54:33 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.4.2.4:
* Minor update to fix issues with Python 3.11.
- Changes from version 2.4.2.0:
* Added package cdb.graphics.plot for easy plotting.
* Added package cdb.sympy.calculus for use of SymPy calculus
functions on Cadabra expressions.
* Expanded nevaluate to numerically evaluate more expressions.
* Various small bug fixes and enhancements.
- For %check, set working dir as HOME to allow tests that try to
write config files to home dir to work without perm issues.
-------------------------------------------------------------------
Sun Oct 9 16:35:12 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.4.0.2:
* Release to accompany the "meld" paper.
-------------------------------------------------------------------
Mon Jul 4 14:23:29 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.3.9.3
* Several fixes to meld (Dominic).
* Make typesetting run in a separate thread to prevent the UI
from feeling sluggish.
* Some changes in the behaviour of list addition/multiplication,
to match Mathematica's behaviour.
* New nevaluate algorithm for fast numerical evaluation of
expressions (work-in-progress).
* Fix for Python 3.10.x.
* Fix for automatic cleanup of Diagonal objects.
* Fix crash with tab-completion.
- Changes from version 2.3.8:
* Option to display negative powers as fractions (Dominic).
* New algorithm slot_asym to (anti-)symmetrise objects in
indices by giving index positions instead of names.
* New functionality to implement algorithms in Python (Dominic).
* Faster re-implementation of get_component using new C++
function modules (Dominic).
* New cdb.numeric.evaluate and cdb.numeric.integrate modules to
evaluate expressions numerically or integrate differential
equations numerically (Dominic).
* Updates to cdb.utils.indices and cdb.core.manip.
* Add warnings functionality to the kernel (Dominic).
* Add infrastructure to let algorithms display progress
information while running (Dominic).
* Add cell cursor position to status bar (Dominic).
* Fix bug in expand_delta when the delta occurs at top-level in
an expression.
* Many meld fixes and improvements (Dominic).
* Fix handling of auto-declare names (names with a '#'
character).
* Keep LaTeX log/aux files on error to aid debugging.
* Fix LaTeX code to avoid some global variable name clashes.
* Fix for compilation on Apple silicon.
- Add cadabra2-link-python.patch: Link against python shared lib
where necessary to avoid linking failures.
-------------------------------------------------------------------
Sun Feb 14 01:09:07 UTC 2021 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.3.6.8:
* Add forgotten file to sources.
- Changes from version 2.3.6.4 and 2.3.6.6:
* Do not remove latex log/aux files on error.
* Fix glib linker error for cadabra-cli
* Fix meld error where terms with different names but same index
structure were melded.
* Add more functionality to cdb.core.node.
* Fix handling of auto-declare names ('A#'); these were not
matched correctly to numbered names ('A18').
* Fix vcpkg changing 'libintl' to 'intl'.
* Optimise AdjformEx to use int32_t instead of mpq_class.
* Handle Diagonal objects with symbolic (as opposed to numeric)
indices.
* Remove old-style gauge theory package.
* Disable mathematica support by default.
- Require jupyter-jupyter_core-filesystem for openSUSE >= 1550 for
the appropriate rpm macros.
-------------------------------------------------------------------
Tue Jan 5 18:54:07 UTC 2021 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.3.6.2:
* Fix a linker error for the xeus jupyter kernel.
-------------------------------------------------------------------
Thu Dec 31 15:34:53 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.3.6.1:
* Once further change to the installation path of cadabra2.so
module, to conform to Debian policies.
* Fix display of lists containing Ex objects.
* Fix import of Jupyter notebooks.
* Fix bug related to automatic dummy index relabelling.
* Fix tab-completion.
- Exclude tests that try to write config files to home dir; since
the `%ctest` macro does not accept additional options, run ctest
manually.
-------------------------------------------------------------------
Tue Nov 17 13:09:12 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.3.5:
* Relocate cadabra module to python_sitelib instead of
python_sitearch.
- Add cadabra2-disable-components-test.patch: Disable a test that
crashes in the buildroot env -- but not in a user session -- for
unknown reasons (gh#kpeeters/cadabra2#212).
- Enable tests since gh#kpeeters/cadabra2#211 is now resolved.
- Add python3 to Requires for cadabra2.
-------------------------------------------------------------------
Sun Nov 1 09:55:08 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.3.2:
* Fixed bug in pattern matching logic used in
integrate_by_parts.
* Fixed bug which would prevent assignment to node multiplier
from Python.
* Tab-completion on command line and in the notebook.
* Install the cadabra2 python module in a standard location.
* Fixes for the Mathematica scalar backend.
* Make expand_delta much faster when the Kronecker delta is
contracted with objects which have anti-symmetry.
* Make meld work correctly with non/anti-commuting objects.
* Make numbered indices like a1 display with a subscript
automatically a<sub>1</sub>.
* Provide pickle functionality for expressions.
* Fixes for compatibility with newer SymPy versions.
* Added a 'find' function in the notebook, to search input
cells.
* New Jupyter kernel (enabled by default) which does not require
Xeus.
* Various improvements and fixed for handling and display of
Young tableaux.
* Added ExNode::ex() to obtain an Ex object from an ExNode
iterator.
- Drop patches incorporated upstream:
* cadabra2-python-modules-location.patch.
* Fix-linking-of-cadabra-module.patch.
- Split out a separate package - jupyter-cadabra2-kernel - for the
new jupyter notebook kernel.
- Fix typo in `ENABLE_SYSTEM_JSONCPP` option passed to `%cmake`.
- Set up but disable building and running tests until issues with
the test-suite are sorted out [gh#kpeeters/cadabra2#211,
gh#kpeeters/cadabra2#212].
-------------------------------------------------------------------
Fri Aug 28 20:52:48 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
- Refresh Fix-linking-of-cadabra-module.patch with fix for same
issue committed upstream [gh#kpeeters/cadabra2#202].
-------------------------------------------------------------------
Thu Jul 9 22:19:27 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.3.0:
* Fix bug which would collect powers of objects with indices and
then report an error.
* Functionality to read Cadabra Cloud notebooks into the desktop
Cadabra.
* Use a better hash function for expression trees (avoiding a
bug in factor_in).
* Expose index symmetries through traces, so that canonicalise
and related algorithms work correctly. Introduced a new
property TableauInherit.
* More flexible LaTeXForm property, to enable more flexible
object display in the notebook.
* Various fixes for behaviour of unwrap with anti- or
non-commuting arguments.
* New meld algorithm for canonicalisation.
- Drop cadabra2-add-pthread-to-cxxflags.patch: No longer required
for building.
- Add cadabra2-python-modules-location.patch to fix location of
python libs and modules (gh#kpeeters/cadabra2#203).
- Rebase Fix-linking-of-cadabra-module.patch for update; only
partially fixed by upstream (gh#kpeeters/cadabra2#202).
- Remove a hashbang from a non-executable script.
- Use %{name}-%{version} naming format for source.
-------------------------------------------------------------------
Sat Jan 4 01:21:06 UTC 2020 - Stefan Brüns <stefan.bruens@rwth-aachen.de>
- Update to version 2.2.8:
* More versatile handling of Trace, including sorting using
cyclic symmetry (Connor).
* Fixes for combine (Connor).
* Save command-line history (Connor).
* Make imported notebooks use the default post_process function.
* Make unwrap move scalars out of exterior (wedge) products, see
this Q&A post.
* Fix bug with indices with accents (github/166).
* Added a cadabra2latex command to convert notebooks to LaTeX.
* Fixed issue building with latest Homebrew on macOS.
* Fixed Windows build issues and add python path settings at
runtime.
* Fixed bug with multipliers not reducing to canonical form.
- Add Fix-linking-of-cadabra-module.patch
- Remove timestamps from Doxygen generated HTML files, drop
obsolete cadabra2-rpmlintrc
- Use system jsoncpp
- Drop conditionals for obsolete distro versions
- Remove lots of unused/obsolete TeX BuildRequires.
-------------------------------------------------------------------
Tue Jun 25 09:24:38 UTC 2019 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.2.7:
* Added cdb.utils.develop and cdb.relativity.abstract.
* Added authentication token to all client-server communication.
* Various extensions to the Trace property.
* Make property info available from Python (Dominic).
* Fixed integration by parts with index-less derivatives.
* Added eliminate_vielbein.
* Fixed display of lists of sympy expressions.
* Fixed (finally) UTF8 input for non-English symbols.
- Update to 2.2.6
* Experimental notebook diff viewer (Dominic).
* Warn when about to overwrite an existing notebook.
* Improvements for HiDPI screens especially on macOS.
* Fix crash in sym/asym.
* Fix undo/redo crash in notebook when deleting cells.
* Improvements to the cdb.core.manip package (Dominic).
* Fix in young_project_tensor.
* Fix pattern matching for anti-commuting factors.
* Added explicit_indices to convert expressions with
implicit indices to their explicit form.
* Add option to build a Jupyter kernel.
* Fix bug in split_index (acted on wrong parts of expressions).
* Fix bug with substitute not checking constraints for
single-factor patterns.
* Add partial option to substitute to require that products or sums
match all terms, not just a partial sum or partial product.
- Refresh cadabra2-add-pthread-to-cxxflags.patch for version
update, no effective changes.
-------------------------------------------------------------------
Fri Mar 15 14:17:41 UTC 2019 - Atri B <badshah400@gmail.com>
- Update to version 2.2.5:
* Interim bug fix release with fixes for upcoming Debian as well
as the new explicit_indices algorithm.
- Move man files to the correct _mandir.
- Minor cleanups using spec-cleaner.
-------------------------------------------------------------------
Fri Jan 25 08:44:42 UTC 2019 - badshah400@gmail.com
- Update to version 2.2.4:
* Minor bug fixes.
- Rebase cadabra2-add-pthread-to-cxxflags.patch for minor changes
to source CMakeLists.txt file.
- Use make doc instead of running doxygen directly.
- Drop commented out commands to generate PDF documentation.
-------------------------------------------------------------------
Mon Apr 30 07:11:16 UTC 2018 - guillaume.gardet@opensuse.org
- Disable explicitly mathematica option (fix archs not supported by
Mathematica, such as AArch64)
-------------------------------------------------------------------
Mon Apr 9 01:46:11 UTC 2018 - badshah400@gmail.com
- BuildRequires: libboost_date_time-devel instead of
BuildRequires: libboost_date_time1_66_0-devel, and only for
openSUSE > 1320; boost-devel in its entirety is already required
for older versions.
- gcc-c++ >= 4.9 now required.
-------------------------------------------------------------------
Fri Mar 30 10:21:17 UTC 2018 - badshah400@gmail.com
- Update to version 2.2.0:
* Experimental support for modifying the expression tree
directly from Python (see e.g. Fourier transforms).
* Fix for integration by parts (gh#kpeeters/cadabra2#71)
* Fix for incorrect conversion to sympy expressions.
* Optionally build with support for Mathematica scalar backend;
see map_mma.
* Many bugfixes for expression display and sympy conversion.
* Now using pybind instead of boost.python, in preparation for
* Windows port, and to enable building against Anaconda.
* Copy/paste of output cells added.
* New simplify command, which simplifies the scalar parts of
expressions, and can be switched to use either Sympy or
Mathematica.
* Fix to treat derivatives with respect to explicit coordinates
as scalars in evaluate; see this Q&A post.
* Fix for failure to flag errors for WeightInherit property.
* Fixed: vary on single-term expressions
* (gh#kpeeters/cadabra2#57)
* Fixed: evaluate with dense factors and no 'values' property on
indices (gh#kpeeters/cadabra2#68)
- Rename and rebase cadabra2-2.1.7.patch to
cadabra2-add-pthread-to-cxxflags.patch.
- Add BuildRequires: libboost_date_time1_66_0-devel, new
dependency with version 2.2.0.
- All python bindings are now required to be installed in
_datadir.
- New binary cadabra2cadabra.
-------------------------------------------------------------------
Fri Feb 2 21:21:57 UTC 2018 - stefan.bruens@rwth-aachen.de
- Add a memory _constraints, builds fail with less than 4 GByte
-------------------------------------------------------------------
Sat Jan 27 22:08:29 UTC 2018 - badshah400@gmail.com
- Disable building LaTeX-based PDF documentation until build
failures are fixed.
- For the -gui package use post(un) scriptlets only for openSUSE
<= 1320; for newer openSUSE, these are handled by rpm triggers
automatically.
-------------------------------------------------------------------
Fri Dec 29 08:33:37 UTC 2017 - kkaempf@suse.com
- fix build, add -pthread to CMAKE_CXX_FLAGS
added cadabra2-2.1.7.patch
-------------------------------------------------------------------
Wed Nov 22 09:19:49 UTC 2017 - badshah400@gmail.com
- Update to version 2.1.7:
* Another interim release to fix bugs and sort out the build
process on new distros.
-------------------------------------------------------------------
Thu Nov 2 09:19:33 UTC 2017 - badshah400@gmail.com
- Update to version 2.1.5:
* Interim release to get a number of bug fixes out to everyone,
and to use as basis for binary packages for several new
distributions.
- Drop cadabra2-cmake-error.patch; fixed upstream.
- Fix Group for cadabra2-doc-pdf: Documentation/PDF doesn't exist,
use Documentation/Other
- Change hashbang "/usr/bin/env python3" to "/usr/bn/python3".
-------------------------------------------------------------------
Wed Oct 11 12:04:47 UTC 2017 - badshah400@gmail.com
- Refresh source tarball from upstream: upstream might have pushed
out a new tarball without changes to the versioning, making the
source validator service complain about the mismatch.
-------------------------------------------------------------------
Sun Aug 6 18:20:17 UTC 2017 - badshah400@gmail.com
- Update to version 2.1.5:
* Interim release with as its main feature the map_sympy command
which makes it much easier to apply sympy algorithms to
component expressions.
- Drop cadabra2-include-functional-header.patch; fixed upstream.
-------------------------------------------------------------------
Thu Jul 20 22:52:55 UTC 2017 - badshah400@gmail.com
- Add an appdata file and install it to /usr/share/metainfo;
BuildRequires on appstream-glib added.
-------------------------------------------------------------------
Sun Jun 25 11:26:09 UTC 2017 - badshah400@gmail.com
- Add cadabra2-include-functional-header.patch: Explicitly include
the <functional> header in core/Functional.hh to fix building on
openSUSE > 1320; apply without conditionals as it doesn't hurt
to have this generally.
-------------------------------------------------------------------
Sun Apr 23 12:14:41 UTC 2017 - badshah400@gmail.com
- BuildRequires: texlive-epstopdf instead of texlive-epstopdf-bin
to fix build failures on Leap 42.1.
-------------------------------------------------------------------
Sun Apr 23 07:24:59 UTC 2017 - badshah400@gmail.com
- Update to version 2.1.4:
* Enable packages to be written using Cadabra notation, instead
of only pure Python (still experimental).
* Young tableaux properties Tableau and FilledTableau the
related algorithm lr_tensor are available again.
* Sorting Majorana spinors possible again using sort_spinors.
* Extended rename_dummies with capability to rename indices to
different set.
* Make vary work on powers of expressions with dummy indices.
* Substitution of sub-sums now available (e.g. substitute of
A+B=C in ex:=A+B+C+D).
* Improved LaTeX export to make printed notebooks look much
better.
* Many improvements to the component engine, in particular for
handling of derivatives and fractions involving tensors.
* Better line spacing for line-wrapped equations.
* Smarter scroll-to-cell behaviour of the notebook.
* Canonicalising expressions with component values for indices
now works again.
* The unwrap algorithm can now be guided about what to unwrap,
and also knows about spinors and Dirac bars.
* Experimental support to use Cadabra directly from C++ code, as
a library (see the c++lib directory).
* Fixes for using a custom post_process defined as a function
nested inside another.
* Rudimentary timing logic, try server.totals();
* Fixed: pasting text in the notebook sometimes double-pastes.
* Fixed: split_index does not work properly on left- and
right-hand side of equations.
* Fixed: sort_product does not always sort expressions.
* Fixed: eliminate_metric only acts at top level of an
expression, should have deep=True by default.
* Fixed: a bug which would lead to a segfault when using
deep=True.
- Rebase cadabra2-cmake-error.patch for version update.
- Add %{name}-rpmlintrc file to suppress warnings about the
presence of "__DATE__" and/or "__TIME__" in generated html files
for documentation (%{name}-doc).
-------------------------------------------------------------------
Tue Jan 17 09:09:44 UTC 2017 - badshah400@gmail.com
- Initial package.
- Add cadabra2-cmake-error.patch to make sure CMakeLists.txt
invokes "execute_process" instead of "execute"; fixes build
failures.

4
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name: cadabra2
version: 2.5.4
mtime: 1723292700
commit: 940443b1e78b2b191caa23307c74703202bedf13

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#
# spec file for package cadabra2
#
# Copyright (c) 2024 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
# Please submit bugfixes or comments via https://bugs.opensuse.org/
#
# Disable testing for 32-bit due to invalid free issue in test canonicalise: https://github.com/kpeeters/cadabra2/issues/280
%ifarch %ix86
%bcond_with tests
%else
%bcond_without tests
%endif
%{?sle15_python_module_pythons}
%if 0%{?suse_version} > 1650
%global pythons python3
%endif
Name: cadabra2
Version: 2.5.4
Release: 0
Summary: A computer algebra system for solving problems in field theory
License: GPL-3.0-or-later
Group: Productivity/Scientific/Math
URL: https://cadabra.science/
Source0: %{name}-%{version}.tar.xz
# PATCH-FIX-UPSTREAM cadabra2-disable-components-test.patch gh#kpeeters/cadabra2#212 badshah400@gmail.com -- Disable a test that crashes for unknown reasons
Patch0: cadabra2-disable-components-test.patch
# PATCH-FIX-UPSTREAM cadabra2-link-gmp.patch badshah400@gmail.com -- Link against gmp shared lib explicitly
Patch1: cadabra2-link-gmp.patch
# PATCH-FIX-UPSTREAM cadabra2-use-system-pybind11.patch gh#kpeeters/cadabra2#310 badshah400@gmail.com -- Allow use of system pybind11, fall back to bundled sources if not found
Patch2: cadabra2-use-system-pybind11.patch
# PATCH-FIX-UPSTREAM cadabra2-cmake-correct-python-variable.patch gh#kpeeters/cadabra2#309 badshah400@gmail.com -- Use correct variable set by cmake FindPython, i.e. Python_EXECUTABLE, not PYTHON_EXECUTABLE
Patch3: cadabra2-cmake-correct-python-variable.patch
BuildRequires: %{python_module devel >= 3.9}
BuildRequires: %{python_module gobject-devel}
BuildRequires: %{python_module ipykernel}
BuildRequires: %{python_module matplotlib}
BuildRequires: %{python_module pybind11-devel}
BuildRequires: %{python_module sympy}
BuildRequires: appstream-glib
BuildRequires: cmake
BuildRequires: doxygen
BuildRequires: gcc-c++ >= 4.9
BuildRequires: gmp-devel
BuildRequires: hicolor-icon-theme
BuildRequires: libboost_date_time-devel
BuildRequires: libboost_filesystem-devel
BuildRequires: libboost_headers-devel
BuildRequires: libboost_program_options-devel
BuildRequires: libboost_python3-devel
BuildRequires: libboost_regex-devel
BuildRequires: libboost_system-devel
BuildRequires: libuuid-devel
BuildRequires: pcre-devel
BuildRequires: pkgconfig
BuildRequires: python-rpm-macros
BuildRequires: update-desktop-files
BuildRequires: pkgconfig(gtk+-3.0)
BuildRequires: pkgconfig(gtkmm-3.0)
BuildRequires: pkgconfig(jsoncpp)
BuildRequires: pkgconfig(sqlite3)
Requires: python3 >= 3.8
Recommends: %{name}-doc
%if 0%{?suse_version} >= 1550
BuildRequires: jupyter-jupyter_core-filesystem
%endif
# SECTION For test
%if %{with tests}
BuildRequires: %{python_module gmpy2}
%endif
# /SECTION
Recommends: %{name}-examples
%description
Cadabra2 is a computer algebra system (CAS) designed specifically for
the solution of problems encountered in field theory. It has extensive
functionality for tensor computer algebra, tensor polynomial
simplification including multi-term symmetries, fermions and
anti-commuting variables, Clifford algebras and Fierz transformations,
implicit coordinate dependence, multiple index types and many more.
The input format is a subset of TeX. Both a command-line and a
graphical interface are available.
Key features of Cadabra2:
- Input and output using TeX notation.
- Designed for field-theory problems, with handling of anti-commuting
and non-commuting objects without special notations for their
products, gamma matrix algebra, Fierz identities, Dirac conjugation,
vielbeine, flat and curved, covariant and contravariant indices,
implicit dependence of tensors on coordinates, partial and covariant
derivatives...
- Powerful tensor simplification algorithms, not just for mono-term
symmetries but also for multi-terms symmetries like the Bianchi
identity, or dimensionally-dependent symmetries like the Schouten
identity.
%package gui
Summary: GUI for cadabra2: computer algebra system for problems in field theory
Group: Productivity/Scientific/Math
Requires: %{name} = %{version}
Obsoletes: cadabra < 2.0
Provides: cadabra = %{version}
%description gui
Cadabra2 is a computer algebra system (CAS) designed specifically for
the solution of problems encountered in field theory.
This package provides the GUI for %{name} and it's desktop menu integration.
%package examples
Summary: A computer algebra system for solving problems in field theory
Group: Productivity/Scientific/Math
Requires: %{name} = %{version}
BuildArch: noarch
%description examples
Cadabra2 is a computer algebra system (CAS) designed specifically for
the solution of problems encountered in field theory.
This package provides examples for %{name}.
%package doc
Summary: A computer algebra system for solving problems in field theory
Group: Documentation/HTML
Obsoletes: cadabra-doc < 2.0
Provides: cadabra-doc = %{version}
BuildArch: noarch
%description doc
Cadabra2 is a computer algebra system (CAS) designed specifically for
the solution of problems encountered in field theory.
This package provides html documentation for %{name}.
%package -n jupyter-cadabra2-kernel
Summary: Jupyter kernel for cadabra2
Group: Productivity/Scientific/Math
Requires: %{name} = %{version}
Requires: jupyter-notebook
%description -n jupyter-cadabra2-kernel
Cadabra2 is a computer algebra system (CAS) designed specifically for
the solution of problems encountered in field theory.
This package provides a jupyter kernel for %{name}.
%prep
%autosetup -p1
rm examples/.gitignore
# Remove timestamps from Doxygen HTML files
echo "HTML_TIMESTAMP = NO" >> config/Doxyfile
# REMOVE HASHBANG FROM NON-EXEC SCRIPT
sed -i "1{/#!\/usr\/bin\/env python/d}" libs/appdirs/cdb_appdirs.py
%build
%{python_expand #
%cmake \
-DCMAKE_MANDIR:PATH=%{_mandir} \
-DINSTALL_LATEX_DIR:PATH=%{_datadir}/texmf \
-DENABLE_FRONTEND:BOOL=ON \
-DENABLE_SYSTEM_JSONCPP:BOOL=ON \
-DENABLE_MATHEMATICA:BOOL=OFF \
-DBUILD_TESTS:BOOL=%{?with_tests:ON}%{!?with_tests:OFF} \
-DPython_EXECUTABLE=%{_bindir}/$python \
%{nil}
}
%cmake_build
cd ..
%make_build doc
%install
%cmake_install
mkdir -p %{buildroot}%{_datadir}/texmf/tex/latex/cadabra2/
ln %{buildroot}%{_datadir}/cadabra2/latex/* %{buildroot}%{_datadir}/texmf/tex/latex/cadabra2/
%if %{with tests}
%check
export PATH=${PATH}:%{buildroot}%{_bindir}
export PYTHONDONTWRITEBYTECODE=1
# Set HOME to current dir to allow tests that try to
# write config files to home dir to run without perm issues
export HOME=`pwd`
%ctest
%endif
%files
%doc README.rst
%license doc/license.txt
%{_bindir}/cadabra2cadabra
%{_bindir}/cadabra2latex
%{_bindir}/cadabra-server
%{_bindir}/cdb-nbtool
%{_bindir}/%{name}
%{_bindir}/%{name}-cli
%{_bindir}/%{name}ipynb
%{_bindir}/%{name}python
%{_bindir}/%{name}html
%{_datadir}/%{name}/
%{_datadir}/texmf
%{python3_sitearch}/cadabra2*.so
%{python3_sitearch}/cadabra2_defaults.py
%{python3_sitearch}/cdb_appdirs.py
%{python3_sitearch}/cdb/
%{_mandir}/man1/cadabra*.1%{?ext_man}
%files gui
%license doc/license.txt
%{_bindir}/%{name}-gtk
%{_datadir}/icons/hicolor/*/apps/cadabra2-gtk.*
%{_datadir}/applications/*.cadabra2-gtk.desktop
%dir %{_datadir}/metainfo
%{_datadir}/metainfo/*.appdata.xml
%files -n jupyter-cadabra2-kernel
%license doc/license.txt
%{python3_sitearch}/cadabra2_jupyter/
%{python3_sitearch}/notebook/
%{_jupyter_kernel_dir}/cadabra2/
%files examples
%doc examples/
%files doc
%doc doxygen/html
%changelog