Accepting request 1136489 from science

OBS-URL: https://build.opensuse.org/request/show/1136489
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/htscodecs?expand=0&rev=4

htscodecs-1.5.0.tar.gz

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:34def7341d01a374583d61c9012a80f6b40af078b11bfcaacba1a2412e34dab3
-size 3498542

htscodecs-1.6.0.tar.gz

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:4b4abb6dfa192f179386c1d49256892a134297ecb4dd25ad4c346e9dde1108c0
+size 3715332

htscodecs.changes

@@ -1,3 +1,37 @@
+-------------------------------------------------------------------
+Wed Jan  3 01:32:19 UTC 2024 - Stefan Brüns <stefan.bruens@rwth-aachen.de>
+
+- Update to 1.6.0:
+  * Changes
+    + Replaced the rANS codec SIMD gathers with simulated gathers
+      via scalar memory fetches. This helps AMD Zen4, but
+      importantly it also fixes a disastrous performance regression
+      caused by Intel's DownFall microcode fix.
+    + There is an impact on pre-DownFall speeds, but we should
+      focus on patched CPUs as a priority.
+    + A small speed up to the rans_F_to_s3 function used by
+      order-0 rans decode.
+    + Small speed up to SIMD rans32x16 order-1 encoder by reducing
+      cache misses. Also sped up the rans4x8 order-1 encoder,
+      particularly on AMD Zen4.
+    + Now supports building with "zig cc"
+  * Bug fixes
+    + Improve robustness of name tokeniser when given non 7-bit
+      ASCII and on machines where "char" defaults to unsigned.
+    + Also fixed a 1 byte buffer read-overrun in name tokeniser.
+    + Fix name tokeniser encoder failure with some duplicated
+      streams.
+    + Fixed rans_set_cpu to work multiple times, as well as
+      reinstating the ability to change decode and encode side
+      independently (accidentally lost in commit 958032c). No
+      effect on usage, but it improves the test coverage.
+    + Added a round-trip fuzz tester to test the ability to
+      encode. The old fuzz testing was decode streams only.
+    + Fixed bounds checking in rans_uncompress_O0_32x16_avx2,
+      fixing buffer read overruns.
+    + Removed undefined behaviour in transpose_and_copy(),
+      fixing zig cc builds.
+
 -------------------------------------------------------------------
 Thu May  4 14:47:16 UTC 2023 - Andrea Manzini <andrea.manzini@suse.com>
 

htscodecs.spec

@@ -1,7 +1,7 @@
 #
 # spec file for package htscodecs
 #
-# Copyright (c) 2023 SUSE LLC
+# Copyright (c) 2024 SUSE LLC
 #
 # All modifications and additions to the file contributed by third parties
 # remain the property of their copyright owners, unless otherwise agreed
@@ -18,7 +18,7 @@
 
 %define   sonum 2
 Name:           htscodecs
-Version:        1.5.0
+Version:        1.6.0
 Release:        0
 Summary:        C library for custom compression for CRAM and other formats
 License:        MIT