forked from pool/htscodecs
Accepting request 971254 from home:susnux:branches:science
Required for libhts OBS-URL: https://build.opensuse.org/request/show/971254 OBS-URL: https://build.opensuse.org/package/show/science/htscodecs?expand=0&rev=1
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Git OBS Bridge
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ef7a9140e1
23
.gitattributes
vendored
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.gitattributes
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## Default LFS
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*.7z filter=lfs diff=lfs merge=lfs -text
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*.bsp filter=lfs diff=lfs merge=lfs -text
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*.bz2 filter=lfs diff=lfs merge=lfs -text
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*.gem filter=lfs diff=lfs merge=lfs -text
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*.gz filter=lfs diff=lfs merge=lfs -text
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*.jar filter=lfs diff=lfs merge=lfs -text
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*.lz filter=lfs diff=lfs merge=lfs -text
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*.lzma filter=lfs diff=lfs merge=lfs -text
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*.obscpio filter=lfs diff=lfs merge=lfs -text
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*.oxt filter=lfs diff=lfs merge=lfs -text
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*.pdf filter=lfs diff=lfs merge=lfs -text
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*.png filter=lfs diff=lfs merge=lfs -text
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*.rpm filter=lfs diff=lfs merge=lfs -text
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*.tbz filter=lfs diff=lfs merge=lfs -text
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*.tbz2 filter=lfs diff=lfs merge=lfs -text
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*.tgz filter=lfs diff=lfs merge=lfs -text
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*.ttf filter=lfs diff=lfs merge=lfs -text
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*.txz filter=lfs diff=lfs merge=lfs -text
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*.whl filter=lfs diff=lfs merge=lfs -text
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*.xz filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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1
baselibs.conf
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baselibs.conf
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libhtscodecs2
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3
htscodecs-1.2.2.tar.gz
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htscodecs-1.2.2.tar.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:d17d7a505da3fc79dcced320c132c5492b5dc78ee70d9ca8218b927070f183ca
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size 3044356
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5
htscodecs.changes
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htscodecs.changes
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-------------------------------------------------------------------
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Wed Apr 20 19:45:48 UTC 2022 - Ferdinand Thiessen <rpm@fthiessen.de>
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- Created initial package for libhts
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83
htscodecs.spec
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htscodecs.spec
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#
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# spec file for package htscodecs
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#
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# Copyright (c) 2022 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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%define sonum 2
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Name: htscodecs
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Version: 1.2.2
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Release: 0
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Summary: C library for custom compression for CRAM and other formats
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License: MIT
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Group: Productivity/Scientific/Other
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URL: https://github.com/samtools/htscodecs
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Source0: https://github.com/samtools/htscodecs/releases/download/v%{version}/htscodecs-%{version}.tar.gz
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Source100: baselibs.conf
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BuildRequires: gcc-c++
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BuildRequires: pkgconfig
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BuildRequires: pkgconfig(bzip2)
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BuildRequires: pkgconfig(zlib)
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%description
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htscodecs provides an API to access CRAM codecs used for "EXTERNAL" block types.
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These consist of two variants of the rANS codec (8-bit and 16-bit renormalisation,
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with run-length encoding and bit-packing also supported in the latter),
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a dynamic arithmetic coder, and custom codecs for name/ID compression
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and quality score compression derived from fqzcomp.
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%package -n lib%{name}%{sonum}
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Summary: C library for custom compression for CRAM and other formats
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Group: System/Libraries
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%description -n lib%{name}%{sonum}
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htscodecs provides an API to access CRAM codecs used for "EXTERNAL" block types.
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These consist of two variants of the rANS codec (8-bit and 16-bit renormalisation,
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with run-length encoding and bit-packing also supported in the latter),
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a dynamic arithmetic coder, and custom codecs for name/ID compression
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and quality score compression derived from fqzcomp.
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%package devel
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Summary: Header files and libraries for compiling against %{name}
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Group: Development/Libraries/C and C++
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Requires: lib%{name}%{sonum} = %{version}
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%description devel
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Header files and libraries of the samtools project for compiling against %{name}.
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%prep
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%setup -q
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%build
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%configure --disable-static
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%make_build
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%install
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%make_install
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rm %{buildroot}%{_libdir}/lib%{name}.la
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%post -n lib%{name}%{sonum} -p /sbin/ldconfig
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%postun -n lib%{name}%{sonum} -p /sbin/ldconfig
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%files -n lib%{name}%{sonum}
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%license LICENSE.md
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%{_libdir}/lib%{name}.so.*
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%files devel
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%doc README.md NEWS
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%{_includedir}/htscodecs
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%{_libdir}/lib%{name}.so
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%changelog
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