forked from pool/mvapich2
This commit is contained in:
Nicolas Morey-Chaisemartin
Git OBS Bridge
commit
035e4e4291
23
.gitattributes
vendored
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23
.gitattributes
vendored
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@ -0,0 +1,23 @@
|
||||
## Default LFS
|
||||
*.7z filter=lfs diff=lfs merge=lfs -text
|
||||
*.bsp filter=lfs diff=lfs merge=lfs -text
|
||||
*.bz2 filter=lfs diff=lfs merge=lfs -text
|
||||
*.gem filter=lfs diff=lfs merge=lfs -text
|
||||
*.gz filter=lfs diff=lfs merge=lfs -text
|
||||
*.jar filter=lfs diff=lfs merge=lfs -text
|
||||
*.lz filter=lfs diff=lfs merge=lfs -text
|
||||
*.lzma filter=lfs diff=lfs merge=lfs -text
|
||||
*.obscpio filter=lfs diff=lfs merge=lfs -text
|
||||
*.oxt filter=lfs diff=lfs merge=lfs -text
|
||||
*.pdf filter=lfs diff=lfs merge=lfs -text
|
||||
*.png filter=lfs diff=lfs merge=lfs -text
|
||||
*.rpm filter=lfs diff=lfs merge=lfs -text
|
||||
*.tbz filter=lfs diff=lfs merge=lfs -text
|
||||
*.tbz2 filter=lfs diff=lfs merge=lfs -text
|
||||
*.tgz filter=lfs diff=lfs merge=lfs -text
|
||||
*.ttf filter=lfs diff=lfs merge=lfs -text
|
||||
*.txz filter=lfs diff=lfs merge=lfs -text
|
||||
*.whl filter=lfs diff=lfs merge=lfs -text
|
||||
*.xz filter=lfs diff=lfs merge=lfs -text
|
||||
*.zip filter=lfs diff=lfs merge=lfs -text
|
||||
*.zst filter=lfs diff=lfs merge=lfs -text
|
||||
1
.gitignore
vendored
Normal file
1
.gitignore
vendored
Normal file
@ -0,0 +1 @@
|
||||
.osc
|
||||
9
mpivars.csh
Normal file
9
mpivars.csh
Normal file
@ -0,0 +1,9 @@
|
||||
set -f path= ( prefix/bin $path )
|
||||
|
||||
if ($?MANPATH) then
|
||||
if ( "$MANPATH" !~ *prefix/man* ) then
|
||||
setenv MANPATH prefix/man:$MANPATH
|
||||
endif
|
||||
else
|
||||
setenv MANPATH prefix/man:
|
||||
endif
|
||||
16
mpivars.sh
Normal file
16
mpivars.sh
Normal file
@ -0,0 +1,16 @@
|
||||
case $PATH in
|
||||
*prefix/bin*)
|
||||
true
|
||||
;;
|
||||
*)
|
||||
PATH=prefix/bin:$PATH
|
||||
esac
|
||||
|
||||
|
||||
case $MANPATH in
|
||||
*prefix/share/man*)
|
||||
true
|
||||
;;
|
||||
*)
|
||||
MANPATH=prefix/share/man:$MANPATH
|
||||
esac
|
||||
23
mvapich-s390_get_cycles.patch
Normal file
23
mvapich-s390_get_cycles.patch
Normal file
@ -0,0 +1,23 @@
|
||||
---
|
||||
src/mpid/ch3/channels/common/include/mv2_clock.h | 6 ++++++
|
||||
1 file changed, 6 insertions(+)
|
||||
|
||||
Index: src/mpid/ch3/channels/common/include/mv2_clock.h
|
||||
===================================================================
|
||||
--- src/mpid/ch3/channels/common/include/mv2_clock.h.orig
|
||||
+++ src/mpid/ch3/channels/common/include/mv2_clock.h
|
||||
@@ -82,6 +82,14 @@ static inline cycles_t get_cycles()
|
||||
return ret;
|
||||
}
|
||||
|
||||
+#elif defined(__s390__) || defined(__s390x__)
|
||||
+typedef unsigned long cycles_t;
|
||||
+static inline cycles_t get_cycles()
|
||||
+{
|
||||
+ unsigned long clk;
|
||||
+ asm volatile("stck %0" : "=Q" (clk) : : "cc");
|
||||
+ return clk >> 2;
|
||||
+}
|
||||
#else
|
||||
#warning get_cycles not implemented for this architecture: attempt asm/timex.h
|
||||
#include <asm/timex.h>
|
||||
3
mvapich2-2.2.tar.gz
Normal file
3
mvapich2-2.2.tar.gz
Normal file
@ -0,0 +1,3 @@
|
||||
version https://git-lfs.github.com/spec/v1
|
||||
oid sha256:791a6fc2b23de63b430b3e598bf05b1b25b82ba8bf7e0622fc81ba593b3bb131
|
||||
size 16422868
|
||||
468
mvapich2-psm.changes
Normal file
468
mvapich2-psm.changes
Normal file
@ -0,0 +1,468 @@
|
||||
-------------------------------------------------------------------
|
||||
Tue May 16 16:29:41 UTC 2017 - nmoreychaisemartin@suse.com
|
||||
|
||||
- Fix mvapich2-testsuite packaging
|
||||
- Disable build on armv7
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Mar 29 08:06:23 CEST 2017 - pth@suse.de
|
||||
|
||||
- Make dependencies on libs now coming from rdma-core versioned.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Nov 29 13:08:18 CET 2016 - pth@suse.de
|
||||
|
||||
- Create environment module (bsc#1004628).
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Nov 23 11:00:43 CET 2016 - pth@suse.de
|
||||
|
||||
- Fix URL.
|
||||
- Update to mvapich 2.2 GA. Changes since rc1:
|
||||
MVAPICH2 2.2 (09/07/2016)
|
||||
|
||||
* Features and Enhancements (since 2.2rc2):
|
||||
- Single node collective tuning for Bridges@PSC, Stampede@TACC and other
|
||||
architectures
|
||||
- Enable PSM builds when both PSM and PSM2 libraries are present
|
||||
- Add support for HCAs that return result of atomics in big endian notation
|
||||
- Establish loopback connections by default if HCA supports atomics
|
||||
* Bug Fixes (since 2.2rc2):
|
||||
- Fix minor error in use of communicator object in collectives
|
||||
- Fix missing u_int64_t declaration with PGI compilers
|
||||
- Fix memory leak in RMA rendezvous code path
|
||||
|
||||
MVAPICH2 2.2rc2 (08/08/2016)
|
||||
|
||||
* Features and Enhancements (since 2.2rc1):
|
||||
- Enhanced performance for MPI_Comm_split through new bitonic algorithm
|
||||
- Enable graceful fallback to Shared Memory if LiMIC2 or CMA transfer fails
|
||||
- Enable support for multiple MPI initializations
|
||||
- Unify process affinity support in Gen2, PSM and PSM2 channels
|
||||
- Remove verbs dependency when building the PSM and PSM2 channels
|
||||
- Allow processes to request MPI_THREAD_MULTIPLE when socket or NUMA node
|
||||
level affinity is specified
|
||||
- Point-to-point and collective performance optimization for Intel Knights
|
||||
Landing
|
||||
- Automatic detection and tuning for InfiniBand EDR HCAs
|
||||
- Warn user to reconfigure library if rank type is not large enough to
|
||||
represent all ranks in job
|
||||
- Collective tuning for Opal@LLNL, Bridges@PSC, and Stampede-1.5@TACC
|
||||
- Tuning and architecture detection for Intel Broadwell processors
|
||||
- Add ability to avoid using --enable-new-dtags with ld
|
||||
- Add LIBTVMPICH specific CFLAGS and LDFLAGS
|
||||
|
||||
* Bug Fixes (since 2.2rc1):
|
||||
- Disable optimization that removes use of calloc in ptmalloc hook
|
||||
detection code
|
||||
- Fix weak alias typos (allows successful compilation with CLANG compiler)
|
||||
- Fix issues in PSM large message gather operations
|
||||
- Enhance error checking in collective tuning code
|
||||
- Fix issues with UD based communication in RoCE mode
|
||||
- Fix issues with PMI2 support in singleton mode
|
||||
- Fix default binding bug in hydra launcher
|
||||
- Fix issues with Checkpoint Restart when launched with mpirun_rsh
|
||||
- Fix fortran binding issues with Intel 2016 compilers
|
||||
- Fix issues with socket/NUMA node level binding
|
||||
- Disable atomics when using Connect-IB with RDMA_CM
|
||||
- Fix hang in MPI_Finalize when using hybrid channel
|
||||
- Fix memory leaks
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Nov 15 14:04:50 CET 2016 - pth@suse.de
|
||||
|
||||
- Update to version 2.2rc1. Changes since 2.1:
|
||||
|
||||
MVAPICH2 2.2rc1 (03/29/2016)
|
||||
|
||||
* Features and Enhancements (since 2.2b):
|
||||
- Support for OpenPower architecture
|
||||
- Optimized inter-node and intra-node communication
|
||||
- Support for Intel Omni-Path architecture
|
||||
- Thanks to Intel for contributing the patch
|
||||
- Introduction of a new PSM2 channel for Omni-Path
|
||||
- Support for RoCEv2
|
||||
- Architecture detection for PSC Bridges system with Omni-Path
|
||||
- Enhanced startup performance and reduced memory footprint for storing
|
||||
InfiniBand end-point information with SLURM
|
||||
- Support for shared memory based PMI operations
|
||||
- Availability of an updated patch from the MVAPICH project website
|
||||
with this support for SLURM installations
|
||||
- Optimized pt-to-pt and collective tuning for Chameleon InfiniBand
|
||||
systems at TACC/UoC
|
||||
- Enable affinity by default for TrueScale(PSM) and Omni-Path(PSM2)
|
||||
channels
|
||||
- Enhanced tuning for shared-memory based MPI_Bcast
|
||||
- Enhanced debugging support and error messages
|
||||
- Update to hwloc version 1.11.2
|
||||
|
||||
* Bug Fixes (since 2.2b):
|
||||
- Fix issue in some of the internal algorithms used for MPI_Bcast,
|
||||
MPI_Alltoall and MPI_Reduce
|
||||
- Fix hang in one of the internal algorithms used for MPI_Scatter
|
||||
- Thanks to Ivan Raikov@Stanford for reporting this issue
|
||||
- Fix issue with rdma_connect operation
|
||||
- Fix issue with Dynamic Process Management feature
|
||||
- Fix issue with de-allocating InfiniBand resources in blocking mode
|
||||
- Fix build errors caused due to improper compile time guards
|
||||
- Thanks to Adam Moody@LLNL for the report
|
||||
- Fix finalize hang when running in hybrid or UD-only mode
|
||||
- Thanks to Jerome Vienne@TACC for reporting this issue
|
||||
- Fix issue in MPI_Win_flush operation
|
||||
- Thanks to Nenad Vukicevic for reporting this issue
|
||||
- Fix out of memory issues with non-blocking collectives code
|
||||
- Thanks to Phanisri Pradeep Pratapa and Fang Liu@GaTech for
|
||||
reporting this issue
|
||||
- Fix fall-through bug in external32 pack
|
||||
- Thanks to Adam Moody@LLNL for the report and patch
|
||||
- Fix issue with on-demand connection establishment and blocking mode
|
||||
- Thanks to Maksym Planeta@TU Dresden for the report
|
||||
- Fix memory leaks in hardware multicast based broadcast code
|
||||
- Fix memory leaks in TrueScale(PSM) channel
|
||||
- Fix compilation warnings
|
||||
|
||||
MVAPICH2 2.2b (11/12/2015)
|
||||
|
||||
* Features and Enhancements (since 2.2a):
|
||||
- Enhanced performance for small messages
|
||||
- Enhanced startup performance with SLURM
|
||||
- Support for PMIX_Iallgather and PMIX_Ifence
|
||||
- Support to enable affinity with asynchronous progress thread
|
||||
- Enhanced support for MPIT based performance variables
|
||||
- Tuned VBUF size for performance
|
||||
- Improved startup performance for QLogic PSM-CH3 channel
|
||||
- Thanks to Maksym Planeta@TU Dresden for the patch
|
||||
|
||||
* Bug Fixes (since 2.2a):
|
||||
- Fix issue with MPI_Get_count in QLogic PSM-CH3 channel with very large
|
||||
messages (>2GB)
|
||||
- Fix issues with shared memory collectives and checkpoint-restart
|
||||
- Fix hang with checkpoint-restart
|
||||
- Fix issue with unlinking shared memory files
|
||||
- Fix memory leak with MPIT
|
||||
- Fix minor typos and usage of inline and static keywords
|
||||
- Thanks to Maksym Planeta@TU Dresden for the patch and suggestions
|
||||
- Fix missing MPIDI_FUNC_EXIT
|
||||
- Thanks to Maksym Planeta@TU Dresden for the patch
|
||||
- Remove unused code
|
||||
- Thanks to Maksym Planeta@TU Dresden for the patch
|
||||
- Continue with warning if user asks to enable XRC when the system does not
|
||||
support XRC
|
||||
|
||||
MVAPICH2 2.2a (08/17/2015)
|
||||
|
||||
* Features and Enhancements (since 2.1 GA):
|
||||
|
||||
- Based on MPICH 3.1.4
|
||||
- Support for backing on-demand UD CM information with shared memory
|
||||
for minimizing memory footprint
|
||||
- Reorganized HCA-aware process mapping
|
||||
- Dynamic identification of maximum read/atomic operations supported by HCA
|
||||
- Enabling support for intra-node communications in RoCE mode without
|
||||
shared memory
|
||||
- Updated to hwloc 1.11.0
|
||||
- Updated to sm_20 kernel optimizations for MPI Datatypes
|
||||
- Automatic detection and tuning for 24-core Haswell architecture
|
||||
|
||||
* Bug Fixes (since 2.1 GA):
|
||||
|
||||
- Fix for error with multi-vbuf design for GPU based communication
|
||||
- Fix bugs with hybrid UD/RC/XRC communications
|
||||
- Fix for MPICH putfence/getfence for large messages
|
||||
- Fix for error in collective tuning framework
|
||||
- Fix validation failure with Alltoall with IN_PLACE option
|
||||
- Thanks for Mahidhar Tatineni @SDSC for the report
|
||||
- Fix bug with MPI_Reduce with IN_PLACE option
|
||||
- Thanks to Markus Geimer for the report
|
||||
- Fix for compilation failures with multicast disabled
|
||||
- Thanks to Devesh Sharma @Emulex for the report
|
||||
- Fix bug with MPI_Bcast
|
||||
- Fix IPC selection for shared GPU mode systems
|
||||
- Fix for build time warnings and memory leaks
|
||||
- Fix issues with Dynamic Process Management
|
||||
- Thanks to Neil Spruit for the report
|
||||
- Fix bug in architecture detection code
|
||||
- Thanks to Adam Moody @LLNL for the report
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Oct 14 11:28:41 CEST 2016 - pth@suse.de
|
||||
|
||||
- Create and include modules file for Mvapich2 (bsc#1004628).
|
||||
|
||||
- Remove mvapich2-fix-implicit-decl.patch as the fix is upstream.
|
||||
- Adapt spec file to the changed micro benchmark install directory.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sun Jul 24 14:24:59 UTC 2016 - p.drouand@gmail.com
|
||||
|
||||
- Update to version 2.1
|
||||
* Features and Enhancements (since 2.1rc2):
|
||||
- Tuning for EDR adapters
|
||||
- Optimization of collectives for SDSC Comet system
|
||||
- Based on MPICH-3.1.4
|
||||
- Enhanced startup performance with mpirun_rsh
|
||||
- Checkpoint-Restart Support with DMTCP (Distributed MultiThreaded
|
||||
CheckPointing)
|
||||
- Thanks to the DMTCP project team (http://dmtcp.sourceforge.net/)
|
||||
- Support for handling very large messages in RMA
|
||||
- Optimize size of buffer requested for control messages in large message
|
||||
transfer
|
||||
- Enhanced automatic detection of atomic support
|
||||
- Optimized collectives (bcast, reduce, and allreduce) for 4K processes
|
||||
- Introduce support to sleep for user specified period before aborting
|
||||
- Disable PSM from setting CPU affinity
|
||||
- Install PSM error handler to print more verbose error messages
|
||||
- Introduce retry mechanism to perform psm_ep_open in PSM channel
|
||||
* Bug-Fixes (since 2.1rc2):
|
||||
- Relocate reading environment variables in PSM
|
||||
- Fix issue with automatic process mapping
|
||||
- Fix issue with checkpoint restart when full path is not given
|
||||
- Fix issue with Dynamic Process Management
|
||||
- Fix issue in CUDA IPC code path
|
||||
- Fix corner case in CMA runtime detection
|
||||
* Features and Enhancements (since 2.1rc1):
|
||||
- Based on MPICH-3.1.4
|
||||
- Enhanced startup performance with mpirun_rsh
|
||||
- Checkpoint-Restart Support with DMTCP (Distributed MultiThreaded
|
||||
CheckPointing)
|
||||
- Support for handling very large messages in RMA
|
||||
- Optimize size of buffer requested for control messages in large message
|
||||
transfer
|
||||
- Enhanced automatic detection of atomic support
|
||||
- Optimized collectives (bcast, reduce, and allreduce) for 4K processes
|
||||
- Introduce support to sleep for user specified period before aborting
|
||||
- Disable PSM from setting CPU affinity
|
||||
- Install PSM error handler to print more verbose error messages
|
||||
- Introduce retry mechanism to perform psm_ep_open in PSM channel
|
||||
* Bug-Fixes (since 2.1rc1):
|
||||
- Fix failures with shared memory collectives with checkpoint-restart
|
||||
- Fix failures with checkpoint-restart when using internal communication
|
||||
buffers of different size
|
||||
- Fix undeclared variable error when --disable-cxx is specified with
|
||||
configure
|
||||
- Fix segfault seen during connect/accept with dynamic processes
|
||||
- Fix errors with large messages pack/unpack operations in PSM channel
|
||||
- Fix for bcast collective tuning
|
||||
- Fix assertion errors in one-sided put operations in PSM channel
|
||||
- Fix issue with code getting stuck in infinite loop inside ptmalloc
|
||||
- Fix assertion error in shared memory large message transfers
|
||||
- Fix compilation warnings
|
||||
* Features and Enhancements (since 2.1a):
|
||||
- Based on MPICH-3.1.3
|
||||
- Flexibility to use internal communication buffers of different size for
|
||||
improved performance and memory footprint
|
||||
- Improve communication performance by removing locks from critical path
|
||||
- Enhanced communication performance for small/medium message sizes
|
||||
- Support for linking Intel Trace Analyzer and Collector
|
||||
- Increase the number of connect retry attempts with RDMA_CM
|
||||
- Automatic detection and tuning for Haswell architecture
|
||||
* Bug-Fixes (since 2.1a):
|
||||
- Fix automatic detection of support for atomics
|
||||
- Fix issue with void pointer arithmetic with PGI
|
||||
- Fix deadlock in ctxidup MPICH test in PSM channel
|
||||
- Fix compile warnings
|
||||
* Features and Enhancements (since 2.0):
|
||||
- Based on MPICH-3.1.2
|
||||
- Support for PMI-2 based startup with SLURM
|
||||
- Enhanced startup performance for Gen2/UD-Hybrid channel
|
||||
- GPU support for MPI_Scan and MPI_Exscan collective operations
|
||||
- Optimize creation of 2-level communicator
|
||||
- Collective optimization for PSM-CH3 channel
|
||||
- Tuning for IvyBridge architecture
|
||||
- Add -export-all option to mpirun_rsh
|
||||
- Support for additional MPI-T performance variables (PVARs)
|
||||
in the CH3 channel
|
||||
- Link with libstdc++ when building with GPU support
|
||||
(required by CUDA 6.5)
|
||||
* Bug-Fixes (since 2.0):
|
||||
- Fix error in large message (>2GB) transfers in CMA code path
|
||||
- Fix memory leaks in OFA-IB-CH3 and OFA-IB-Nemesis channels
|
||||
- Fix issues with optimizations for broadcast and reduce collectives
|
||||
- Fix hang at finalize with Gen2-Hybrid/UD channel
|
||||
- Fix issues for collectives with non power-of-two process counts
|
||||
- Make ring startup use HCA selected by user
|
||||
- Increase counter length for shared-memory collectives
|
||||
- Use download Url as source
|
||||
- Some other minor improvements
|
||||
- Add mvapich2-fix-implicit-decl.patch
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Oct 9 13:32:28 CEST 2014 - pth@suse.de
|
||||
|
||||
- Don't provide the full source uri as build servis can't handle it.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Oct 8 17:12:27 CEST 2014 - pth@suse.de
|
||||
|
||||
- Only run autogen.sh if the distribution has a new enough automake.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Sep 24 17:06:22 CEST 2014 - pth@suse.de
|
||||
|
||||
- Update to mvapich2 2.0 GMC:
|
||||
* Features and Enhancements (since 2.0rc2):
|
||||
- Consider CMA in collective tuning framework
|
||||
|
||||
* Bug-Fixes (since 2.0rc2):
|
||||
- Fix bug when disabling registration cache
|
||||
- Fix shared memory window bug when shared memory collectives
|
||||
are disabled.
|
||||
- Fix mpirun_rsh bug when running mpmd programs with no arguments
|
||||
|
||||
- Exclude Aarch64 for the time being as asm/timex.h seems to be missing
|
||||
from the glibc kernel headers.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Jun 3 11:24:34 CEST 2014 - pth@suse.de
|
||||
|
||||
- Update to OFED 3.12 final.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon May 26 13:02:24 CEST 2014 - pth@suse.de
|
||||
|
||||
- Update to 2.0rc2:
|
||||
* Features and Enhancements (since 2.0rc1):
|
||||
- CMA support is now enabled by default
|
||||
- Optimization of collectives with CMA support
|
||||
- RMA optimizations for shared memory and atomic operations
|
||||
- Tuning RGET and Atomics operations
|
||||
- Tuning RDMA FP-based communication
|
||||
- MPI-T support for additional performance and control variables
|
||||
- The --enable-mpit-pvars=yes configuration option will now
|
||||
enable only MVAPICH2 specific variables
|
||||
- Large message transfer support for PSM interface
|
||||
- Optimization of collectives for PSM interface
|
||||
- Updated to hwloc v1.9
|
||||
|
||||
* Bug-Fixes (since 2.0rc1):
|
||||
- Fix multicast hang when there is a single process on one node
|
||||
and more than one process on other nodes
|
||||
- Fix non-power-of-two usage of scatter-doubling-allgather algorithm
|
||||
- Fix for bcastzero type hang during finalize
|
||||
- Enhanced handling of failures in RDMA_CM based
|
||||
connection establishment
|
||||
- Fix for a hang in finalize when using RDMA_CM
|
||||
- Finish receive request when RDMA READ completes in RGET protocol
|
||||
- Always use direct RDMA when flush is used
|
||||
- Fix compilation error with --enable-g=all in PSM interface
|
||||
- Fix warnings and memory leaks
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu May 15 16:01:50 CEST 2014 - pth@suse.de
|
||||
|
||||
- mvapich2-psm-devel requires infinipath-psm-devel.
|
||||
- Remove redundent requires for the devel-static package.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed May 7 15:40:33 UTC 2014 - stefan.fent@suse.com
|
||||
|
||||
- remove typo in mvapich-s390_get_cycles.patch
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Apr 29 13:47:06 CEST 2014 - pth@suse.de
|
||||
|
||||
- Remove bogus 0 from spec.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Apr 28 12:30:12 CEST 2014 - pth@suse.de
|
||||
|
||||
- Remove all additional mvapich specific CFLAGS and extra LIBS.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Apr 25 09:41:47 CEST 2014 - pth@suse.de
|
||||
|
||||
- Fix ExclusiveArch
|
||||
- Only PSM needs explicit configuration so drop the else branch
|
||||
in configure call.
|
||||
- mvapich2 now builds in parallel so tell make.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Apr 24 21:27:06 CEST 2014 - pth@suse.de
|
||||
|
||||
- Build Mvapich2 for Qlogic from its own mvapich2-psm.spec.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Apr 23 18:04:36 CEST 2014 - pth@suse.de
|
||||
|
||||
- Add mvapich2-pthread_yield.patch to define GNU_SOURCE before
|
||||
including pthread.h to get pthread_yield declared.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Apr 23 14:48:07 CEST 2014 - pth@suse.de
|
||||
|
||||
- Don't require libibcommon as it's gone with OFED 3.12.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Apr 16 15:50:22 UTC 2014 - stefan.fent@suse.com
|
||||
|
||||
- add asm code from kernel to properly implement get_cycles on
|
||||
s390 and s390x (bnc #870424) (mvapich-s390_get_cycles.patch)
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Apr 7 14:49:22 CEST 2014 - pth@suse.de
|
||||
|
||||
- Fix spec so that testsuite builds correctly.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sat Apr 5 20:28:49 CEST 2014 - pth@suse.de
|
||||
|
||||
- Update config.* to make it build on ppc64le.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Mar 27 12:56:50 CET 2014 - pth@suse.de
|
||||
|
||||
- Regenerate autotool files to get ppc64le recognized.
|
||||
- The predefined platform macros for s390 are lower case not upcase.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Mar 26 16:15:45 CET 2014 - pth@suse.de
|
||||
|
||||
- Finally got the syntax for conditionals in spec right...
|
||||
- Add a dummy implementation of get_cycles for s390x.
|
||||
- Update to 2.0rc1 as this is a MPI-3 implementation. For
|
||||
detailed changes see.
|
||||
- Fix options passed to mpi-selector
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Mar 25 14:42:43 CET 2014 - pth@suse.de
|
||||
|
||||
- Include the two COPYRIGHT files in the package.
|
||||
- BuildRequire kernel-headers on s390x.
|
||||
- Fix spec file
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Mar 5 14:04:47 CET 2014 - pth@suse.de
|
||||
|
||||
- Compile with support for PSM on ix86 (fate#315889).
|
||||
- mvapich2 has a testsuite, so run it from a separate spec file.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Feb 10 13:13:39 CET 2014 - pth@suse.de
|
||||
|
||||
- Update to 1.9:
|
||||
- Remove mvapich2-1.0.2-non-void-rtn.patch as the changes are in
|
||||
the upstream source.
|
||||
- Reformat BuildRequires
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Jan 24 19:15:39 CET 2014 - pth@suse.de
|
||||
|
||||
- Update to OFED 3.12 daily.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Feb 29 00:00:00 CET 2008 - - jjolly@suse.de
|
||||
|
||||
- Update to 1.0.2 from OFED 1.3 GA release
|
||||
- Minor changes to return value patch
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Jan 31 00:00:00 CET 2008 - - jjolly@suse.de
|
||||
|
||||
- Update to 1.0.1 from OFED 1.3 rc2
|
||||
- Fixed several 'undefined return value' compile errors
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Jul 10 00:00:00 CET 2007 - - hvogel@suse.de
|
||||
|
||||
- Initial Package, Version 0.9.8
|
||||
|
||||
247
mvapich2-psm.spec
Normal file
247
mvapich2-psm.spec
Normal file
@ -0,0 +1,247 @@
|
||||
#
|
||||
# spec file for package mvapich2-psm
|
||||
#
|
||||
# Copyright (c) 2017 SUSE LINUX GmbH, Nuernberg, Germany.
|
||||
#
|
||||
# All modifications and additions to the file contributed by third parties
|
||||
# remain the property of their copyright owners, unless otherwise agreed
|
||||
# upon. The license for this file, and modifications and additions to the
|
||||
# file, is the same license as for the pristine package itself (unless the
|
||||
# license for the pristine package is not an Open Source License, in which
|
||||
# case the license is the MIT License). An "Open Source License" is a
|
||||
# license that conforms to the Open Source Definition (Version 1.9)
|
||||
# published by the Open Source Initiative.
|
||||
|
||||
# Please submit bugfixes or comments via http://bugs.opensuse.org/
|
||||
#
|
||||
|
||||
|
||||
#############################################################################
|
||||
# #
|
||||
# NOTE: If you modify this spec file, or the .changes file you MUST run #
|
||||
# 'bash ./pre_checkin.sh' to create spec and changes for #
|
||||
# mvapich2-testuite. #
|
||||
# #
|
||||
#############################################################################
|
||||
|
||||
Name: mvapich2-psm
|
||||
Summary: OSU MVAPICH2 MPI package
|
||||
License: BSD-3-Clause
|
||||
Group: Development/Libraries/Parallel
|
||||
Version: 2.2
|
||||
Release: 0
|
||||
Source0: http://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich2-%{version}.tar.gz
|
||||
Source1: mpivars.sh
|
||||
Source2: mpivars.csh
|
||||
Patch0: mvapich-s390_get_cycles.patch
|
||||
Patch1: mvapich2-pthread_yield.patch
|
||||
Url: http://mvapich.cse.ohio-state.edu/overview/mvapich2/
|
||||
BuildRoot: %{_tmppath}/%{name}-%{version}-build
|
||||
BuildRequires: autoconf
|
||||
BuildRequires: autoconf
|
||||
BuildRequires: automake
|
||||
BuildRequires: automake
|
||||
BuildRequires: bison
|
||||
BuildRequires: gcc-c++
|
||||
BuildRequires: gcc-fortran
|
||||
BuildRequires: libibmad-devel
|
||||
# For transition to rdma-core make sure the new packages are selected
|
||||
# Once the transition is made the version check can be removed
|
||||
BuildRequires: libibumad-devel >= 12
|
||||
BuildRequires: libibverbs-devel >= 12
|
||||
BuildRequires: librdmacm-devel >= 12
|
||||
%ifnarch s390 s390x
|
||||
BuildRequires: libnuma-devel
|
||||
%endif
|
||||
BuildRequires: libtool
|
||||
BuildRequires: libtool
|
||||
BuildRequires: mpi-selector
|
||||
BuildRequires: python-devel
|
||||
BuildRequires: sysfsutils
|
||||
BuildRequires: xorg-x11-devel
|
||||
# mvapich needs asm/timex.h which seems to be missing from the glibc kernel headers
|
||||
ExcludeArch: aarch64 armv7hl
|
||||
|
||||
%if "%{name}" == "mvapich2-psm"
|
||||
ExclusiveArch: %ix86 x86_64
|
||||
BuildRequires: infinipath-psm-devel
|
||||
%ifarch x86_64
|
||||
BuildRequires: libpsm2-devel
|
||||
%endif
|
||||
%endif
|
||||
|
||||
Requires: mpi-selector
|
||||
|
||||
%define _prefix /usr/%_lib/mpi/gcc/mvapich2
|
||||
%define _libexecdir %{_prefix}/%{_lib}
|
||||
%define _benchmarkdir %{_libexecdir}/osu-micro-benchmarks
|
||||
|
||||
%description
|
||||
This is an MPI-3 implementation which includes all MPI-1 features. It
|
||||
is based on MPICH2 and MVICH.
|
||||
|
||||
%if "%{name}" == "mvapich2" || "%{name}" == "mvapich2-psm"
|
||||
|
||||
%package devel
|
||||
Summary: OSU MVAPICH2 MPI package
|
||||
Group: Development/Libraries/Parallel
|
||||
Requires: %{name} = %{version}
|
||||
Requires: libibumad-devel
|
||||
Requires: libibverbs-devel
|
||||
Requires: librdmacm-devel
|
||||
%if "%{name}" == "mvapich2-psm"
|
||||
Requires: infinipath-psm-devel
|
||||
%ifarch x86_64
|
||||
Requires: libpsm2-devel
|
||||
%endif
|
||||
%endif
|
||||
|
||||
%description devel
|
||||
This is an MPI-2 implementation which includes all MPI-1 features. It
|
||||
is based on MPICH2 and MVICH.
|
||||
|
||||
|
||||
|
||||
%package devel-static
|
||||
Summary: OSU MVAPICH2 MPI package - static libraries
|
||||
Group: Development/Libraries/Parallel
|
||||
Requires: %{name}-devel = %{version}
|
||||
|
||||
%description devel-static
|
||||
This is an MPI-3 implementation which includes all MPI-1 and MPI-2 features. It
|
||||
is based on MPICH2 and MVICH. This package contains the static libraries
|
||||
|
||||
%endif
|
||||
|
||||
%prep
|
||||
%setup -q -n mvapich2-%{version}%{?rc_ver}
|
||||
%patch0
|
||||
%patch1
|
||||
cp /usr/share/automake*/config.* .
|
||||
|
||||
%build
|
||||
#./autogen.sh
|
||||
%configure --prefix=%_prefix --libdir=%_libdir --mandir=%_mandir --sysconfdir=%_sysconfdir --libexecdir=%{_libexecdir} \
|
||||
%if "%{name}" == "mvapich2-psm"
|
||||
--with-device=ch3:psm \
|
||||
%endif
|
||||
--without-mpe
|
||||
make %{?_smp_mflags} V=1
|
||||
|
||||
%if "%{name}" == "mvapich2-testsuite"
|
||||
%check
|
||||
make V=1 check
|
||||
%endif
|
||||
|
||||
%install
|
||||
make DESTDIR=%{buildroot} V=1 install
|
||||
# make and install mpivars files
|
||||
sed 's,prefix,%_prefix,g' %{S:1} > %{buildroot}%{_bindir}/mpivars.sh
|
||||
sed 's,prefix,%_prefix,g' %{S:2} > %{buildroot}%{_bindir}/mpivars.csh
|
||||
rm -f %{buildroot}%{_libdir}/libfmpich.la \
|
||||
%{buildroot}%{_libdir}/libmpich.la \
|
||||
%{buildroot}%{_libdir}/libmpichcxx.la \
|
||||
%{buildroot}%{_libdir}/libmpichf90.la \
|
||||
%{buildroot}%{_libdir}/libmpl.la \
|
||||
%{buildroot}%{_libdir}/libopa.la \
|
||||
%{buildroot}%{_libdir}/libmpi.la \
|
||||
%{buildroot}%{_libdir}/libmpicxx.la \
|
||||
%{buildroot}%{_libdir}/libmpifort.la
|
||||
|
||||
%if "%{name}" == "mvapich2-testsuite"
|
||||
rm -rf %{buildroot}%{_libdir}/pkgconfig
|
||||
rm -rf %{buildroot}%{_includedir}
|
||||
rm -rf %{buildroot}%{_mandir}/man3/*
|
||||
rm -rf %{buildroot}%{_libdir}/*.so
|
||||
rm -rf %{buildroot}%{_libdir}/pkgconfig/mvapich2.pc
|
||||
rm -rf %{buildroot}%{_libdir}/pkgconfig/openpa.pc
|
||||
|
||||
rm -rf %{buildroot}%{_libdir}/*.a
|
||||
%endif
|
||||
|
||||
install -m 0644 COPYRIGHT* %{buildroot}%{_datadir}/doc/mvapich2
|
||||
install -m 0644 CHANGE* %{buildroot}%{_datadir}/doc/mvapich2
|
||||
|
||||
%if "%{name}" != "mvapich2-testsuite"
|
||||
mkdir -p %{buildroot}/usr/share/modules/gnu-mvapich2
|
||||
|
||||
cat << EOF > %{buildroot}/usr/share/modules/gnu-mvapich2/%{version}
|
||||
#%%Module
|
||||
proc ModulesHelp { } {
|
||||
global dotversion
|
||||
puts stderr "\tLoads the gnu - mvapich2 %{version} Environment"
|
||||
}
|
||||
|
||||
module-whatis "Loads the gnu mvapich2 %{version} Environment."
|
||||
conflict gnu-mvapich2
|
||||
prepend-path PATH %{_bindir}
|
||||
prepend-path INCLUDE %{_includedir}
|
||||
prepend-path INCLUDE %{_libdir}
|
||||
prepend-path MANPATH %{_mandir}
|
||||
prepend-path LD_LIBRARY_PATH %{_libdir}
|
||||
|
||||
EOF
|
||||
|
||||
cat << EOF > %{buildroot}/usr/share/modules/gnu-mvapich2/.version
|
||||
#%%Module1.0
|
||||
set ModulesVersion "%{version}"
|
||||
|
||||
EOF
|
||||
%endif
|
||||
|
||||
%post
|
||||
/sbin/ldconfig
|
||||
/usr/bin/mpi-selector \
|
||||
--register %{name}-%{version} \
|
||||
--source-dir %{_bindir} \
|
||||
--yes
|
||||
|
||||
%postun
|
||||
/sbin/ldconfig
|
||||
/usr/bin/mpi-selector --unregister %{name}-%{version} --yes --silent
|
||||
|
||||
%files
|
||||
%defattr(-, root, root)
|
||||
%doc %{_datadir}/doc
|
||||
%dir /usr/%_lib/mpi
|
||||
%dir /usr/%_lib/mpi/gcc
|
||||
%dir /usr/%_lib/mpi/gcc/mvapich2
|
||||
%dir %{_prefix}
|
||||
%dir %{_bindir}
|
||||
%dir %{_datadir}
|
||||
%if "%{name}" == "mvapich2" || "%{name}" == "mvapich2-psm"
|
||||
%dir /usr/share/modules
|
||||
%endif
|
||||
%if "%{name}" == "mvapich2"
|
||||
%dir %{_includedir}
|
||||
%endif
|
||||
%dir %{_mandir}
|
||||
%dir %{_mandir}/man1
|
||||
%dir %{_mandir}/man3
|
||||
%dir %{_libdir}
|
||||
%dir %{_libexecdir}
|
||||
%{_bindir}/*
|
||||
%{_libexecdir}/osu-micro-benchmarks
|
||||
%if "%{name}" == "mvapich2" || "%{name}" == "mvapich2-psm"
|
||||
/usr/share/modules/gnu-mvapich2
|
||||
%endif
|
||||
%{_mandir}/man1/*
|
||||
%{_libdir}/*.so.*
|
||||
|
||||
%if "%{name}" == "mvapich2" || "%{name}" == "mvapich2-psm"
|
||||
%files devel
|
||||
%defattr(-,root,root)
|
||||
%dir %{_libdir}/pkgconfig
|
||||
%{_mandir}/man3/*
|
||||
%{_includedir}
|
||||
%{_libdir}/*.so
|
||||
%{_libdir}/pkgconfig/mvapich2.pc
|
||||
%{_libdir}/pkgconfig/openpa.pc
|
||||
|
||||
%files devel-static
|
||||
%defattr(-,root,root)
|
||||
%{_libdir}/*.a
|
||||
|
||||
%endif
|
||||
|
||||
%changelog
|
||||
20
mvapich2-pthread_yield.patch
Normal file
20
mvapich2-pthread_yield.patch
Normal file
@ -0,0 +1,20 @@
|
||||
From: Philipp Thomas <pth@suse.de>
|
||||
Date: 2014-04-23 17:44:45+02:00
|
||||
Subject: Define GNU_SOURCE for pthrea_yield
|
||||
|
||||
---
|
||||
src/openpa/test/opa_test.h | 1 +
|
||||
1 file changed, 1 insertion(+)
|
||||
|
||||
Index: src/openpa/test/opa_test.h
|
||||
===================================================================
|
||||
--- src/openpa/test/opa_test.h.orig 2014-03-22 22:56:53.000000000 +0100
|
||||
+++ src/openpa/test/opa_test.h 2014-04-23 17:43:18.697310735 +0200
|
||||
@@ -20,6 +20,7 @@
|
||||
#include <limits.h>
|
||||
#include <time.h>
|
||||
#if defined(OPA_HAVE_PTHREAD_H)
|
||||
+# define GNU_SOURCE
|
||||
# include <pthread.h>
|
||||
#endif /* HAVE_PTHREAD_H */
|
||||
|
||||
468
mvapich2-testsuite.changes
Normal file
468
mvapich2-testsuite.changes
Normal file
@ -0,0 +1,468 @@
|
||||
-------------------------------------------------------------------
|
||||
Tue May 16 16:29:41 UTC 2017 - nmoreychaisemartin@suse.com
|
||||
|
||||
- Fix mvapich2-testsuite packaging
|
||||
- Disable build on armv7
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Mar 29 08:06:23 CEST 2017 - pth@suse.de
|
||||
|
||||
- Make dependencies on libs now coming from rdma-core versioned.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Nov 29 13:08:18 CET 2016 - pth@suse.de
|
||||
|
||||
- Create environment module (bsc#1004628).
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Nov 23 11:00:43 CET 2016 - pth@suse.de
|
||||
|
||||
- Fix URL.
|
||||
- Update to mvapich 2.2 GA. Changes since rc1:
|
||||
MVAPICH2 2.2 (09/07/2016)
|
||||
|
||||
* Features and Enhancements (since 2.2rc2):
|
||||
- Single node collective tuning for Bridges@PSC, Stampede@TACC and other
|
||||
architectures
|
||||
- Enable PSM builds when both PSM and PSM2 libraries are present
|
||||
- Add support for HCAs that return result of atomics in big endian notation
|
||||
- Establish loopback connections by default if HCA supports atomics
|
||||
* Bug Fixes (since 2.2rc2):
|
||||
- Fix minor error in use of communicator object in collectives
|
||||
- Fix missing u_int64_t declaration with PGI compilers
|
||||
- Fix memory leak in RMA rendezvous code path
|
||||
|
||||
MVAPICH2 2.2rc2 (08/08/2016)
|
||||
|
||||
* Features and Enhancements (since 2.2rc1):
|
||||
- Enhanced performance for MPI_Comm_split through new bitonic algorithm
|
||||
- Enable graceful fallback to Shared Memory if LiMIC2 or CMA transfer fails
|
||||
- Enable support for multiple MPI initializations
|
||||
- Unify process affinity support in Gen2, PSM and PSM2 channels
|
||||
- Remove verbs dependency when building the PSM and PSM2 channels
|
||||
- Allow processes to request MPI_THREAD_MULTIPLE when socket or NUMA node
|
||||
level affinity is specified
|
||||
- Point-to-point and collective performance optimization for Intel Knights
|
||||
Landing
|
||||
- Automatic detection and tuning for InfiniBand EDR HCAs
|
||||
- Warn user to reconfigure library if rank type is not large enough to
|
||||
represent all ranks in job
|
||||
- Collective tuning for Opal@LLNL, Bridges@PSC, and Stampede-1.5@TACC
|
||||
- Tuning and architecture detection for Intel Broadwell processors
|
||||
- Add ability to avoid using --enable-new-dtags with ld
|
||||
- Add LIBTVMPICH specific CFLAGS and LDFLAGS
|
||||
|
||||
* Bug Fixes (since 2.2rc1):
|
||||
- Disable optimization that removes use of calloc in ptmalloc hook
|
||||
detection code
|
||||
- Fix weak alias typos (allows successful compilation with CLANG compiler)
|
||||
- Fix issues in PSM large message gather operations
|
||||
- Enhance error checking in collective tuning code
|
||||
- Fix issues with UD based communication in RoCE mode
|
||||
- Fix issues with PMI2 support in singleton mode
|
||||
- Fix default binding bug in hydra launcher
|
||||
- Fix issues with Checkpoint Restart when launched with mpirun_rsh
|
||||
- Fix fortran binding issues with Intel 2016 compilers
|
||||
- Fix issues with socket/NUMA node level binding
|
||||
- Disable atomics when using Connect-IB with RDMA_CM
|
||||
- Fix hang in MPI_Finalize when using hybrid channel
|
||||
- Fix memory leaks
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Nov 15 14:04:50 CET 2016 - pth@suse.de
|
||||
|
||||
- Update to version 2.2rc1. Changes since 2.1:
|
||||
|
||||
MVAPICH2 2.2rc1 (03/29/2016)
|
||||
|
||||
* Features and Enhancements (since 2.2b):
|
||||
- Support for OpenPower architecture
|
||||
- Optimized inter-node and intra-node communication
|
||||
- Support for Intel Omni-Path architecture
|
||||
- Thanks to Intel for contributing the patch
|
||||
- Introduction of a new PSM2 channel for Omni-Path
|
||||
- Support for RoCEv2
|
||||
- Architecture detection for PSC Bridges system with Omni-Path
|
||||
- Enhanced startup performance and reduced memory footprint for storing
|
||||
InfiniBand end-point information with SLURM
|
||||
- Support for shared memory based PMI operations
|
||||
- Availability of an updated patch from the MVAPICH project website
|
||||
with this support for SLURM installations
|
||||
- Optimized pt-to-pt and collective tuning for Chameleon InfiniBand
|
||||
systems at TACC/UoC
|
||||
- Enable affinity by default for TrueScale(PSM) and Omni-Path(PSM2)
|
||||
channels
|
||||
- Enhanced tuning for shared-memory based MPI_Bcast
|
||||
- Enhanced debugging support and error messages
|
||||
- Update to hwloc version 1.11.2
|
||||
|
||||
* Bug Fixes (since 2.2b):
|
||||
- Fix issue in some of the internal algorithms used for MPI_Bcast,
|
||||
MPI_Alltoall and MPI_Reduce
|
||||
- Fix hang in one of the internal algorithms used for MPI_Scatter
|
||||
- Thanks to Ivan Raikov@Stanford for reporting this issue
|
||||
- Fix issue with rdma_connect operation
|
||||
- Fix issue with Dynamic Process Management feature
|
||||
- Fix issue with de-allocating InfiniBand resources in blocking mode
|
||||
- Fix build errors caused due to improper compile time guards
|
||||
- Thanks to Adam Moody@LLNL for the report
|
||||
- Fix finalize hang when running in hybrid or UD-only mode
|
||||
- Thanks to Jerome Vienne@TACC for reporting this issue
|
||||
- Fix issue in MPI_Win_flush operation
|
||||
- Thanks to Nenad Vukicevic for reporting this issue
|
||||
- Fix out of memory issues with non-blocking collectives code
|
||||
- Thanks to Phanisri Pradeep Pratapa and Fang Liu@GaTech for
|
||||
reporting this issue
|
||||
- Fix fall-through bug in external32 pack
|
||||
- Thanks to Adam Moody@LLNL for the report and patch
|
||||
- Fix issue with on-demand connection establishment and blocking mode
|
||||
- Thanks to Maksym Planeta@TU Dresden for the report
|
||||
- Fix memory leaks in hardware multicast based broadcast code
|
||||
- Fix memory leaks in TrueScale(PSM) channel
|
||||
- Fix compilation warnings
|
||||
|
||||
MVAPICH2 2.2b (11/12/2015)
|
||||
|
||||
* Features and Enhancements (since 2.2a):
|
||||
- Enhanced performance for small messages
|
||||
- Enhanced startup performance with SLURM
|
||||
- Support for PMIX_Iallgather and PMIX_Ifence
|
||||
- Support to enable affinity with asynchronous progress thread
|
||||
- Enhanced support for MPIT based performance variables
|
||||
- Tuned VBUF size for performance
|
||||
- Improved startup performance for QLogic PSM-CH3 channel
|
||||
- Thanks to Maksym Planeta@TU Dresden for the patch
|
||||
|
||||
* Bug Fixes (since 2.2a):
|
||||
- Fix issue with MPI_Get_count in QLogic PSM-CH3 channel with very large
|
||||
messages (>2GB)
|
||||
- Fix issues with shared memory collectives and checkpoint-restart
|
||||
- Fix hang with checkpoint-restart
|
||||
- Fix issue with unlinking shared memory files
|
||||
- Fix memory leak with MPIT
|
||||
- Fix minor typos and usage of inline and static keywords
|
||||
- Thanks to Maksym Planeta@TU Dresden for the patch and suggestions
|
||||
- Fix missing MPIDI_FUNC_EXIT
|
||||
- Thanks to Maksym Planeta@TU Dresden for the patch
|
||||
- Remove unused code
|
||||
- Thanks to Maksym Planeta@TU Dresden for the patch
|
||||
- Continue with warning if user asks to enable XRC when the system does not
|
||||
support XRC
|
||||
|
||||
MVAPICH2 2.2a (08/17/2015)
|
||||
|
||||
* Features and Enhancements (since 2.1 GA):
|
||||
|
||||
- Based on MPICH 3.1.4
|
||||
- Support for backing on-demand UD CM information with shared memory
|
||||
for minimizing memory footprint
|
||||
- Reorganized HCA-aware process mapping
|
||||
- Dynamic identification of maximum read/atomic operations supported by HCA
|
||||
- Enabling support for intra-node communications in RoCE mode without
|
||||
shared memory
|
||||
- Updated to hwloc 1.11.0
|
||||
- Updated to sm_20 kernel optimizations for MPI Datatypes
|
||||
- Automatic detection and tuning for 24-core Haswell architecture
|
||||
|
||||
* Bug Fixes (since 2.1 GA):
|
||||
|
||||
- Fix for error with multi-vbuf design for GPU based communication
|
||||
- Fix bugs with hybrid UD/RC/XRC communications
|
||||
- Fix for MPICH putfence/getfence for large messages
|
||||
- Fix for error in collective tuning framework
|
||||
- Fix validation failure with Alltoall with IN_PLACE option
|
||||
- Thanks for Mahidhar Tatineni @SDSC for the report
|
||||
- Fix bug with MPI_Reduce with IN_PLACE option
|
||||
- Thanks to Markus Geimer for the report
|
||||
- Fix for compilation failures with multicast disabled
|
||||
- Thanks to Devesh Sharma @Emulex for the report
|
||||
- Fix bug with MPI_Bcast
|
||||
- Fix IPC selection for shared GPU mode systems
|
||||
- Fix for build time warnings and memory leaks
|
||||
- Fix issues with Dynamic Process Management
|
||||
- Thanks to Neil Spruit for the report
|
||||
- Fix bug in architecture detection code
|
||||
- Thanks to Adam Moody @LLNL for the report
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Oct 14 11:28:41 CEST 2016 - pth@suse.de
|
||||
|
||||
- Create and include modules file for Mvapich2 (bsc#1004628).
|
||||
|
||||
- Remove mvapich2-fix-implicit-decl.patch as the fix is upstream.
|
||||
- Adapt spec file to the changed micro benchmark install directory.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sun Jul 24 14:24:59 UTC 2016 - p.drouand@gmail.com
|
||||
|
||||
- Update to version 2.1
|
||||
* Features and Enhancements (since 2.1rc2):
|
||||
- Tuning for EDR adapters
|
||||
- Optimization of collectives for SDSC Comet system
|
||||
- Based on MPICH-3.1.4
|
||||
- Enhanced startup performance with mpirun_rsh
|
||||
- Checkpoint-Restart Support with DMTCP (Distributed MultiThreaded
|
||||
CheckPointing)
|
||||
- Thanks to the DMTCP project team (http://dmtcp.sourceforge.net/)
|
||||
- Support for handling very large messages in RMA
|
||||
- Optimize size of buffer requested for control messages in large message
|
||||
transfer
|
||||
- Enhanced automatic detection of atomic support
|
||||
- Optimized collectives (bcast, reduce, and allreduce) for 4K processes
|
||||
- Introduce support to sleep for user specified period before aborting
|
||||
- Disable PSM from setting CPU affinity
|
||||
- Install PSM error handler to print more verbose error messages
|
||||
- Introduce retry mechanism to perform psm_ep_open in PSM channel
|
||||
* Bug-Fixes (since 2.1rc2):
|
||||
- Relocate reading environment variables in PSM
|
||||
- Fix issue with automatic process mapping
|
||||
- Fix issue with checkpoint restart when full path is not given
|
||||
- Fix issue with Dynamic Process Management
|
||||
- Fix issue in CUDA IPC code path
|
||||
- Fix corner case in CMA runtime detection
|
||||
* Features and Enhancements (since 2.1rc1):
|
||||
- Based on MPICH-3.1.4
|
||||
- Enhanced startup performance with mpirun_rsh
|
||||
- Checkpoint-Restart Support with DMTCP (Distributed MultiThreaded
|
||||
CheckPointing)
|
||||
- Support for handling very large messages in RMA
|
||||
- Optimize size of buffer requested for control messages in large message
|
||||
transfer
|
||||
- Enhanced automatic detection of atomic support
|
||||
- Optimized collectives (bcast, reduce, and allreduce) for 4K processes
|
||||
- Introduce support to sleep for user specified period before aborting
|
||||
- Disable PSM from setting CPU affinity
|
||||
- Install PSM error handler to print more verbose error messages
|
||||
- Introduce retry mechanism to perform psm_ep_open in PSM channel
|
||||
* Bug-Fixes (since 2.1rc1):
|
||||
- Fix failures with shared memory collectives with checkpoint-restart
|
||||
- Fix failures with checkpoint-restart when using internal communication
|
||||
buffers of different size
|
||||
- Fix undeclared variable error when --disable-cxx is specified with
|
||||
configure
|
||||
- Fix segfault seen during connect/accept with dynamic processes
|
||||
- Fix errors with large messages pack/unpack operations in PSM channel
|
||||
- Fix for bcast collective tuning
|
||||
- Fix assertion errors in one-sided put operations in PSM channel
|
||||
- Fix issue with code getting stuck in infinite loop inside ptmalloc
|
||||
- Fix assertion error in shared memory large message transfers
|
||||
- Fix compilation warnings
|
||||
* Features and Enhancements (since 2.1a):
|
||||
- Based on MPICH-3.1.3
|
||||
- Flexibility to use internal communication buffers of different size for
|
||||
improved performance and memory footprint
|
||||
- Improve communication performance by removing locks from critical path
|
||||
- Enhanced communication performance for small/medium message sizes
|
||||
- Support for linking Intel Trace Analyzer and Collector
|
||||
- Increase the number of connect retry attempts with RDMA_CM
|
||||
- Automatic detection and tuning for Haswell architecture
|
||||
* Bug-Fixes (since 2.1a):
|
||||
- Fix automatic detection of support for atomics
|
||||
- Fix issue with void pointer arithmetic with PGI
|
||||
- Fix deadlock in ctxidup MPICH test in PSM channel
|
||||
- Fix compile warnings
|
||||
* Features and Enhancements (since 2.0):
|
||||
- Based on MPICH-3.1.2
|
||||
- Support for PMI-2 based startup with SLURM
|
||||
- Enhanced startup performance for Gen2/UD-Hybrid channel
|
||||
- GPU support for MPI_Scan and MPI_Exscan collective operations
|
||||
- Optimize creation of 2-level communicator
|
||||
- Collective optimization for PSM-CH3 channel
|
||||
- Tuning for IvyBridge architecture
|
||||
- Add -export-all option to mpirun_rsh
|
||||
- Support for additional MPI-T performance variables (PVARs)
|
||||
in the CH3 channel
|
||||
- Link with libstdc++ when building with GPU support
|
||||
(required by CUDA 6.5)
|
||||
* Bug-Fixes (since 2.0):
|
||||
- Fix error in large message (>2GB) transfers in CMA code path
|
||||
- Fix memory leaks in OFA-IB-CH3 and OFA-IB-Nemesis channels
|
||||
- Fix issues with optimizations for broadcast and reduce collectives
|
||||
- Fix hang at finalize with Gen2-Hybrid/UD channel
|
||||
- Fix issues for collectives with non power-of-two process counts
|
||||
- Make ring startup use HCA selected by user
|
||||
- Increase counter length for shared-memory collectives
|
||||
- Use download Url as source
|
||||
- Some other minor improvements
|
||||
- Add mvapich2-fix-implicit-decl.patch
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Oct 9 13:32:28 CEST 2014 - pth@suse.de
|
||||
|
||||
- Don't provide the full source uri as build servis can't handle it.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Oct 8 17:12:27 CEST 2014 - pth@suse.de
|
||||
|
||||
- Only run autogen.sh if the distribution has a new enough automake.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Sep 24 17:06:22 CEST 2014 - pth@suse.de
|
||||
|
||||
- Update to mvapich2 2.0 GMC:
|
||||
* Features and Enhancements (since 2.0rc2):
|
||||
- Consider CMA in collective tuning framework
|
||||
|
||||
* Bug-Fixes (since 2.0rc2):
|
||||
- Fix bug when disabling registration cache
|
||||
- Fix shared memory window bug when shared memory collectives
|
||||
are disabled.
|
||||
- Fix mpirun_rsh bug when running mpmd programs with no arguments
|
||||
|
||||
- Exclude Aarch64 for the time being as asm/timex.h seems to be missing
|
||||
from the glibc kernel headers.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Jun 3 11:24:34 CEST 2014 - pth@suse.de
|
||||
|
||||
- Update to OFED 3.12 final.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon May 26 13:02:24 CEST 2014 - pth@suse.de
|
||||
|
||||
- Update to 2.0rc2:
|
||||
* Features and Enhancements (since 2.0rc1):
|
||||
- CMA support is now enabled by default
|
||||
- Optimization of collectives with CMA support
|
||||
- RMA optimizations for shared memory and atomic operations
|
||||
- Tuning RGET and Atomics operations
|
||||
- Tuning RDMA FP-based communication
|
||||
- MPI-T support for additional performance and control variables
|
||||
- The --enable-mpit-pvars=yes configuration option will now
|
||||
enable only MVAPICH2 specific variables
|
||||
- Large message transfer support for PSM interface
|
||||
- Optimization of collectives for PSM interface
|
||||
- Updated to hwloc v1.9
|
||||
|
||||
* Bug-Fixes (since 2.0rc1):
|
||||
- Fix multicast hang when there is a single process on one node
|
||||
and more than one process on other nodes
|
||||
- Fix non-power-of-two usage of scatter-doubling-allgather algorithm
|
||||
- Fix for bcastzero type hang during finalize
|
||||
- Enhanced handling of failures in RDMA_CM based
|
||||
connection establishment
|
||||
- Fix for a hang in finalize when using RDMA_CM
|
||||
- Finish receive request when RDMA READ completes in RGET protocol
|
||||
- Always use direct RDMA when flush is used
|
||||
- Fix compilation error with --enable-g=all in PSM interface
|
||||
- Fix warnings and memory leaks
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu May 15 16:01:50 CEST 2014 - pth@suse.de
|
||||
|
||||
- mvapich2-psm-devel requires infinipath-psm-devel.
|
||||
- Remove redundent requires for the devel-static package.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed May 7 15:40:33 UTC 2014 - stefan.fent@suse.com
|
||||
|
||||
- remove typo in mvapich-s390_get_cycles.patch
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Apr 29 13:47:06 CEST 2014 - pth@suse.de
|
||||
|
||||
- Remove bogus 0 from spec.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Apr 28 12:30:12 CEST 2014 - pth@suse.de
|
||||
|
||||
- Remove all additional mvapich specific CFLAGS and extra LIBS.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Apr 25 09:41:47 CEST 2014 - pth@suse.de
|
||||
|
||||
- Fix ExclusiveArch
|
||||
- Only PSM needs explicit configuration so drop the else branch
|
||||
in configure call.
|
||||
- mvapich2 now builds in parallel so tell make.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Apr 24 21:27:06 CEST 2014 - pth@suse.de
|
||||
|
||||
- Build Mvapich2 for Qlogic from its own mvapich2-psm.spec.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Apr 23 18:04:36 CEST 2014 - pth@suse.de
|
||||
|
||||
- Add mvapich2-pthread_yield.patch to define GNU_SOURCE before
|
||||
including pthread.h to get pthread_yield declared.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Apr 23 14:48:07 CEST 2014 - pth@suse.de
|
||||
|
||||
- Don't require libibcommon as it's gone with OFED 3.12.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Apr 16 15:50:22 UTC 2014 - stefan.fent@suse.com
|
||||
|
||||
- add asm code from kernel to properly implement get_cycles on
|
||||
s390 and s390x (bnc #870424) (mvapich-s390_get_cycles.patch)
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Apr 7 14:49:22 CEST 2014 - pth@suse.de
|
||||
|
||||
- Fix spec so that testsuite builds correctly.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sat Apr 5 20:28:49 CEST 2014 - pth@suse.de
|
||||
|
||||
- Update config.* to make it build on ppc64le.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Mar 27 12:56:50 CET 2014 - pth@suse.de
|
||||
|
||||
- Regenerate autotool files to get ppc64le recognized.
|
||||
- The predefined platform macros for s390 are lower case not upcase.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Mar 26 16:15:45 CET 2014 - pth@suse.de
|
||||
|
||||
- Finally got the syntax for conditionals in spec right...
|
||||
- Add a dummy implementation of get_cycles for s390x.
|
||||
- Update to 2.0rc1 as this is a MPI-3 implementation. For
|
||||
detailed changes see.
|
||||
- Fix options passed to mpi-selector
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Mar 25 14:42:43 CET 2014 - pth@suse.de
|
||||
|
||||
- Include the two COPYRIGHT files in the package.
|
||||
- BuildRequire kernel-headers on s390x.
|
||||
- Fix spec file
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Mar 5 14:04:47 CET 2014 - pth@suse.de
|
||||
|
||||
- Compile with support for PSM on ix86 (fate#315889).
|
||||
- mvapich2 has a testsuite, so run it from a separate spec file.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Feb 10 13:13:39 CET 2014 - pth@suse.de
|
||||
|
||||
- Update to 1.9:
|
||||
- Remove mvapich2-1.0.2-non-void-rtn.patch as the changes are in
|
||||
the upstream source.
|
||||
- Reformat BuildRequires
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Jan 24 19:15:39 CET 2014 - pth@suse.de
|
||||
|
||||
- Update to OFED 3.12 daily.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Feb 29 00:00:00 CET 2008 - - jjolly@suse.de
|
||||
|
||||
- Update to 1.0.2 from OFED 1.3 GA release
|
||||
- Minor changes to return value patch
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Jan 31 00:00:00 CET 2008 - - jjolly@suse.de
|
||||
|
||||
- Update to 1.0.1 from OFED 1.3 rc2
|
||||
- Fixed several 'undefined return value' compile errors
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Jul 10 00:00:00 CET 2007 - - hvogel@suse.de
|
||||
|
||||
- Initial Package, Version 0.9.8
|
||||
|
||||
247
mvapich2-testsuite.spec
Normal file
247
mvapich2-testsuite.spec
Normal file
@ -0,0 +1,247 @@
|
||||
#
|
||||
# spec file for package mvapich2-testsuite
|
||||
#
|
||||
# Copyright (c) 2017 SUSE LINUX GmbH, Nuernberg, Germany.
|
||||
#
|
||||
# All modifications and additions to the file contributed by third parties
|
||||
# remain the property of their copyright owners, unless otherwise agreed
|
||||
# upon. The license for this file, and modifications and additions to the
|
||||
# file, is the same license as for the pristine package itself (unless the
|
||||
# license for the pristine package is not an Open Source License, in which
|
||||
# case the license is the MIT License). An "Open Source License" is a
|
||||
# license that conforms to the Open Source Definition (Version 1.9)
|
||||
# published by the Open Source Initiative.
|
||||
|
||||
# Please submit bugfixes or comments via http://bugs.opensuse.org/
|
||||
#
|
||||
|
||||
|
||||
#############################################################################
|
||||
# #
|
||||
# NOTE: If you modify this spec file, or the .changes file you MUST run #
|
||||
# 'bash ./pre_checkin.sh' to create spec and changes for #
|
||||
# mvapich2-testuite. #
|
||||
# #
|
||||
#############################################################################
|
||||
|
||||
Name: mvapich2-testsuite
|
||||
Summary: OSU MVAPICH2 MPI package
|
||||
License: BSD-3-Clause
|
||||
Group: Development/Libraries/Parallel
|
||||
Version: 2.2
|
||||
Release: 0
|
||||
Source0: http://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich2-%{version}.tar.gz
|
||||
Source1: mpivars.sh
|
||||
Source2: mpivars.csh
|
||||
Patch0: mvapich-s390_get_cycles.patch
|
||||
Patch1: mvapich2-pthread_yield.patch
|
||||
Url: http://mvapich.cse.ohio-state.edu/overview/mvapich2/
|
||||
BuildRoot: %{_tmppath}/%{name}-%{version}-build
|
||||
BuildRequires: autoconf
|
||||
BuildRequires: autoconf
|
||||
BuildRequires: automake
|
||||
BuildRequires: automake
|
||||
BuildRequires: bison
|
||||
BuildRequires: gcc-c++
|
||||
BuildRequires: gcc-fortran
|
||||
BuildRequires: libibmad-devel
|
||||
# For transition to rdma-core make sure the new packages are selected
|
||||
# Once the transition is made the version check can be removed
|
||||
BuildRequires: libibumad-devel >= 12
|
||||
BuildRequires: libibverbs-devel >= 12
|
||||
BuildRequires: librdmacm-devel >= 12
|
||||
%ifnarch s390 s390x
|
||||
BuildRequires: libnuma-devel
|
||||
%endif
|
||||
BuildRequires: libtool
|
||||
BuildRequires: libtool
|
||||
BuildRequires: mpi-selector
|
||||
BuildRequires: python-devel
|
||||
BuildRequires: sysfsutils
|
||||
BuildRequires: xorg-x11-devel
|
||||
# mvapich needs asm/timex.h which seems to be missing from the glibc kernel headers
|
||||
ExcludeArch: aarch64 armv7hl
|
||||
|
||||
%if "%{name}" == "mvapich2-psm"
|
||||
ExclusiveArch: %ix86 x86_64
|
||||
BuildRequires: infinipath-psm-devel
|
||||
%ifarch x86_64
|
||||
BuildRequires: libpsm2-devel
|
||||
%endif
|
||||
%endif
|
||||
|
||||
Requires: mpi-selector
|
||||
|
||||
%define _prefix /usr/%_lib/mpi/gcc/mvapich2
|
||||
%define _libexecdir %{_prefix}/%{_lib}
|
||||
%define _benchmarkdir %{_libexecdir}/osu-micro-benchmarks
|
||||
|
||||
%description
|
||||
This is an MPI-3 implementation which includes all MPI-1 features. It
|
||||
is based on MPICH2 and MVICH.
|
||||
|
||||
%if "%{name}" == "mvapich2" || "%{name}" == "mvapich2-psm"
|
||||
|
||||
%package devel
|
||||
Summary: OSU MVAPICH2 MPI package
|
||||
Group: Development/Libraries/Parallel
|
||||
Requires: %{name} = %{version}
|
||||
Requires: libibumad-devel
|
||||
Requires: libibverbs-devel
|
||||
Requires: librdmacm-devel
|
||||
%if "%{name}" == "mvapich2-psm"
|
||||
Requires: infinipath-psm-devel
|
||||
%ifarch x86_64
|
||||
Requires: libpsm2-devel
|
||||
%endif
|
||||
%endif
|
||||
|
||||
%description devel
|
||||
This is an MPI-2 implementation which includes all MPI-1 features. It
|
||||
is based on MPICH2 and MVICH.
|
||||
|
||||
|
||||
|
||||
%package devel-static
|
||||
Summary: OSU MVAPICH2 MPI package - static libraries
|
||||
Group: Development/Libraries/Parallel
|
||||
Requires: %{name}-devel = %{version}
|
||||
|
||||
%description devel-static
|
||||
This is an MPI-3 implementation which includes all MPI-1 and MPI-2 features. It
|
||||
is based on MPICH2 and MVICH. This package contains the static libraries
|
||||
|
||||
%endif
|
||||
|
||||
%prep
|
||||
%setup -q -n mvapich2-%{version}%{?rc_ver}
|
||||
%patch0
|
||||
%patch1
|
||||
cp /usr/share/automake*/config.* .
|
||||
|
||||
%build
|
||||
#./autogen.sh
|
||||
%configure --prefix=%_prefix --libdir=%_libdir --mandir=%_mandir --sysconfdir=%_sysconfdir --libexecdir=%{_libexecdir} \
|
||||
%if "%{name}" == "mvapich2-psm"
|
||||
--with-device=ch3:psm \
|
||||
%endif
|
||||
--without-mpe
|
||||
make %{?_smp_mflags} V=1
|
||||
|
||||
%if "%{name}" == "mvapich2-testsuite"
|
||||
%check
|
||||
make V=1 check
|
||||
%endif
|
||||
|
||||
%install
|
||||
make DESTDIR=%{buildroot} V=1 install
|
||||
# make and install mpivars files
|
||||
sed 's,prefix,%_prefix,g' %{S:1} > %{buildroot}%{_bindir}/mpivars.sh
|
||||
sed 's,prefix,%_prefix,g' %{S:2} > %{buildroot}%{_bindir}/mpivars.csh
|
||||
rm -f %{buildroot}%{_libdir}/libfmpich.la \
|
||||
%{buildroot}%{_libdir}/libmpich.la \
|
||||
%{buildroot}%{_libdir}/libmpichcxx.la \
|
||||
%{buildroot}%{_libdir}/libmpichf90.la \
|
||||
%{buildroot}%{_libdir}/libmpl.la \
|
||||
%{buildroot}%{_libdir}/libopa.la \
|
||||
%{buildroot}%{_libdir}/libmpi.la \
|
||||
%{buildroot}%{_libdir}/libmpicxx.la \
|
||||
%{buildroot}%{_libdir}/libmpifort.la
|
||||
|
||||
%if "%{name}" == "mvapich2-testsuite"
|
||||
rm -rf %{buildroot}%{_libdir}/pkgconfig
|
||||
rm -rf %{buildroot}%{_includedir}
|
||||
rm -rf %{buildroot}%{_mandir}/man3/*
|
||||
rm -rf %{buildroot}%{_libdir}/*.so
|
||||
rm -rf %{buildroot}%{_libdir}/pkgconfig/mvapich2.pc
|
||||
rm -rf %{buildroot}%{_libdir}/pkgconfig/openpa.pc
|
||||
|
||||
rm -rf %{buildroot}%{_libdir}/*.a
|
||||
%endif
|
||||
|
||||
install -m 0644 COPYRIGHT* %{buildroot}%{_datadir}/doc/mvapich2
|
||||
install -m 0644 CHANGE* %{buildroot}%{_datadir}/doc/mvapich2
|
||||
|
||||
%if "%{name}" != "mvapich2-testsuite"
|
||||
mkdir -p %{buildroot}/usr/share/modules/gnu-mvapich2
|
||||
|
||||
cat << EOF > %{buildroot}/usr/share/modules/gnu-mvapich2/%{version}
|
||||
#%%Module
|
||||
proc ModulesHelp { } {
|
||||
global dotversion
|
||||
puts stderr "\tLoads the gnu - mvapich2 %{version} Environment"
|
||||
}
|
||||
|
||||
module-whatis "Loads the gnu mvapich2 %{version} Environment."
|
||||
conflict gnu-mvapich2
|
||||
prepend-path PATH %{_bindir}
|
||||
prepend-path INCLUDE %{_includedir}
|
||||
prepend-path INCLUDE %{_libdir}
|
||||
prepend-path MANPATH %{_mandir}
|
||||
prepend-path LD_LIBRARY_PATH %{_libdir}
|
||||
|
||||
EOF
|
||||
|
||||
cat << EOF > %{buildroot}/usr/share/modules/gnu-mvapich2/.version
|
||||
#%%Module1.0
|
||||
set ModulesVersion "%{version}"
|
||||
|
||||
EOF
|
||||
%endif
|
||||
|
||||
%post
|
||||
/sbin/ldconfig
|
||||
/usr/bin/mpi-selector \
|
||||
--register %{name}-%{version} \
|
||||
--source-dir %{_bindir} \
|
||||
--yes
|
||||
|
||||
%postun
|
||||
/sbin/ldconfig
|
||||
/usr/bin/mpi-selector --unregister %{name}-%{version} --yes --silent
|
||||
|
||||
%files
|
||||
%defattr(-, root, root)
|
||||
%doc %{_datadir}/doc
|
||||
%dir /usr/%_lib/mpi
|
||||
%dir /usr/%_lib/mpi/gcc
|
||||
%dir /usr/%_lib/mpi/gcc/mvapich2
|
||||
%dir %{_prefix}
|
||||
%dir %{_bindir}
|
||||
%dir %{_datadir}
|
||||
%if "%{name}" == "mvapich2" || "%{name}" == "mvapich2-psm"
|
||||
%dir /usr/share/modules
|
||||
%endif
|
||||
%if "%{name}" == "mvapich2"
|
||||
%dir %{_includedir}
|
||||
%endif
|
||||
%dir %{_mandir}
|
||||
%dir %{_mandir}/man1
|
||||
%dir %{_mandir}/man3
|
||||
%dir %{_libdir}
|
||||
%dir %{_libexecdir}
|
||||
%{_bindir}/*
|
||||
%{_libexecdir}/osu-micro-benchmarks
|
||||
%if "%{name}" == "mvapich2" || "%{name}" == "mvapich2-psm"
|
||||
/usr/share/modules/gnu-mvapich2
|
||||
%endif
|
||||
%{_mandir}/man1/*
|
||||
%{_libdir}/*.so.*
|
||||
|
||||
%if "%{name}" == "mvapich2" || "%{name}" == "mvapich2-psm"
|
||||
%files devel
|
||||
%defattr(-,root,root)
|
||||
%dir %{_libdir}/pkgconfig
|
||||
%{_mandir}/man3/*
|
||||
%{_includedir}
|
||||
%{_libdir}/*.so
|
||||
%{_libdir}/pkgconfig/mvapich2.pc
|
||||
%{_libdir}/pkgconfig/openpa.pc
|
||||
|
||||
%files devel-static
|
||||
%defattr(-,root,root)
|
||||
%{_libdir}/*.a
|
||||
|
||||
%endif
|
||||
|
||||
%changelog
|
||||
468
mvapich2.changes
Normal file
468
mvapich2.changes
Normal file
@ -0,0 +1,468 @@
|
||||
-------------------------------------------------------------------
|
||||
Tue May 16 16:29:41 UTC 2017 - nmoreychaisemartin@suse.com
|
||||
|
||||
- Fix mvapich2-testsuite packaging
|
||||
- Disable build on armv7
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Mar 29 08:06:23 CEST 2017 - pth@suse.de
|
||||
|
||||
- Make dependencies on libs now coming from rdma-core versioned.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Nov 29 13:08:18 CET 2016 - pth@suse.de
|
||||
|
||||
- Create environment module (bsc#1004628).
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Nov 23 11:00:43 CET 2016 - pth@suse.de
|
||||
|
||||
- Fix URL.
|
||||
- Update to mvapich 2.2 GA. Changes since rc1:
|
||||
MVAPICH2 2.2 (09/07/2016)
|
||||
|
||||
* Features and Enhancements (since 2.2rc2):
|
||||
- Single node collective tuning for Bridges@PSC, Stampede@TACC and other
|
||||
architectures
|
||||
- Enable PSM builds when both PSM and PSM2 libraries are present
|
||||
- Add support for HCAs that return result of atomics in big endian notation
|
||||
- Establish loopback connections by default if HCA supports atomics
|
||||
* Bug Fixes (since 2.2rc2):
|
||||
- Fix minor error in use of communicator object in collectives
|
||||
- Fix missing u_int64_t declaration with PGI compilers
|
||||
- Fix memory leak in RMA rendezvous code path
|
||||
|
||||
MVAPICH2 2.2rc2 (08/08/2016)
|
||||
|
||||
* Features and Enhancements (since 2.2rc1):
|
||||
- Enhanced performance for MPI_Comm_split through new bitonic algorithm
|
||||
- Enable graceful fallback to Shared Memory if LiMIC2 or CMA transfer fails
|
||||
- Enable support for multiple MPI initializations
|
||||
- Unify process affinity support in Gen2, PSM and PSM2 channels
|
||||
- Remove verbs dependency when building the PSM and PSM2 channels
|
||||
- Allow processes to request MPI_THREAD_MULTIPLE when socket or NUMA node
|
||||
level affinity is specified
|
||||
- Point-to-point and collective performance optimization for Intel Knights
|
||||
Landing
|
||||
- Automatic detection and tuning for InfiniBand EDR HCAs
|
||||
- Warn user to reconfigure library if rank type is not large enough to
|
||||
represent all ranks in job
|
||||
- Collective tuning for Opal@LLNL, Bridges@PSC, and Stampede-1.5@TACC
|
||||
- Tuning and architecture detection for Intel Broadwell processors
|
||||
- Add ability to avoid using --enable-new-dtags with ld
|
||||
- Add LIBTVMPICH specific CFLAGS and LDFLAGS
|
||||
|
||||
* Bug Fixes (since 2.2rc1):
|
||||
- Disable optimization that removes use of calloc in ptmalloc hook
|
||||
detection code
|
||||
- Fix weak alias typos (allows successful compilation with CLANG compiler)
|
||||
- Fix issues in PSM large message gather operations
|
||||
- Enhance error checking in collective tuning code
|
||||
- Fix issues with UD based communication in RoCE mode
|
||||
- Fix issues with PMI2 support in singleton mode
|
||||
- Fix default binding bug in hydra launcher
|
||||
- Fix issues with Checkpoint Restart when launched with mpirun_rsh
|
||||
- Fix fortran binding issues with Intel 2016 compilers
|
||||
- Fix issues with socket/NUMA node level binding
|
||||
- Disable atomics when using Connect-IB with RDMA_CM
|
||||
- Fix hang in MPI_Finalize when using hybrid channel
|
||||
- Fix memory leaks
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Nov 15 14:04:50 CET 2016 - pth@suse.de
|
||||
|
||||
- Update to version 2.2rc1. Changes since 2.1:
|
||||
|
||||
MVAPICH2 2.2rc1 (03/29/2016)
|
||||
|
||||
* Features and Enhancements (since 2.2b):
|
||||
- Support for OpenPower architecture
|
||||
- Optimized inter-node and intra-node communication
|
||||
- Support for Intel Omni-Path architecture
|
||||
- Thanks to Intel for contributing the patch
|
||||
- Introduction of a new PSM2 channel for Omni-Path
|
||||
- Support for RoCEv2
|
||||
- Architecture detection for PSC Bridges system with Omni-Path
|
||||
- Enhanced startup performance and reduced memory footprint for storing
|
||||
InfiniBand end-point information with SLURM
|
||||
- Support for shared memory based PMI operations
|
||||
- Availability of an updated patch from the MVAPICH project website
|
||||
with this support for SLURM installations
|
||||
- Optimized pt-to-pt and collective tuning for Chameleon InfiniBand
|
||||
systems at TACC/UoC
|
||||
- Enable affinity by default for TrueScale(PSM) and Omni-Path(PSM2)
|
||||
channels
|
||||
- Enhanced tuning for shared-memory based MPI_Bcast
|
||||
- Enhanced debugging support and error messages
|
||||
- Update to hwloc version 1.11.2
|
||||
|
||||
* Bug Fixes (since 2.2b):
|
||||
- Fix issue in some of the internal algorithms used for MPI_Bcast,
|
||||
MPI_Alltoall and MPI_Reduce
|
||||
- Fix hang in one of the internal algorithms used for MPI_Scatter
|
||||
- Thanks to Ivan Raikov@Stanford for reporting this issue
|
||||
- Fix issue with rdma_connect operation
|
||||
- Fix issue with Dynamic Process Management feature
|
||||
- Fix issue with de-allocating InfiniBand resources in blocking mode
|
||||
- Fix build errors caused due to improper compile time guards
|
||||
- Thanks to Adam Moody@LLNL for the report
|
||||
- Fix finalize hang when running in hybrid or UD-only mode
|
||||
- Thanks to Jerome Vienne@TACC for reporting this issue
|
||||
- Fix issue in MPI_Win_flush operation
|
||||
- Thanks to Nenad Vukicevic for reporting this issue
|
||||
- Fix out of memory issues with non-blocking collectives code
|
||||
- Thanks to Phanisri Pradeep Pratapa and Fang Liu@GaTech for
|
||||
reporting this issue
|
||||
- Fix fall-through bug in external32 pack
|
||||
- Thanks to Adam Moody@LLNL for the report and patch
|
||||
- Fix issue with on-demand connection establishment and blocking mode
|
||||
- Thanks to Maksym Planeta@TU Dresden for the report
|
||||
- Fix memory leaks in hardware multicast based broadcast code
|
||||
- Fix memory leaks in TrueScale(PSM) channel
|
||||
- Fix compilation warnings
|
||||
|
||||
MVAPICH2 2.2b (11/12/2015)
|
||||
|
||||
* Features and Enhancements (since 2.2a):
|
||||
- Enhanced performance for small messages
|
||||
- Enhanced startup performance with SLURM
|
||||
- Support for PMIX_Iallgather and PMIX_Ifence
|
||||
- Support to enable affinity with asynchronous progress thread
|
||||
- Enhanced support for MPIT based performance variables
|
||||
- Tuned VBUF size for performance
|
||||
- Improved startup performance for QLogic PSM-CH3 channel
|
||||
- Thanks to Maksym Planeta@TU Dresden for the patch
|
||||
|
||||
* Bug Fixes (since 2.2a):
|
||||
- Fix issue with MPI_Get_count in QLogic PSM-CH3 channel with very large
|
||||
messages (>2GB)
|
||||
- Fix issues with shared memory collectives and checkpoint-restart
|
||||
- Fix hang with checkpoint-restart
|
||||
- Fix issue with unlinking shared memory files
|
||||
- Fix memory leak with MPIT
|
||||
- Fix minor typos and usage of inline and static keywords
|
||||
- Thanks to Maksym Planeta@TU Dresden for the patch and suggestions
|
||||
- Fix missing MPIDI_FUNC_EXIT
|
||||
- Thanks to Maksym Planeta@TU Dresden for the patch
|
||||
- Remove unused code
|
||||
- Thanks to Maksym Planeta@TU Dresden for the patch
|
||||
- Continue with warning if user asks to enable XRC when the system does not
|
||||
support XRC
|
||||
|
||||
MVAPICH2 2.2a (08/17/2015)
|
||||
|
||||
* Features and Enhancements (since 2.1 GA):
|
||||
|
||||
- Based on MPICH 3.1.4
|
||||
- Support for backing on-demand UD CM information with shared memory
|
||||
for minimizing memory footprint
|
||||
- Reorganized HCA-aware process mapping
|
||||
- Dynamic identification of maximum read/atomic operations supported by HCA
|
||||
- Enabling support for intra-node communications in RoCE mode without
|
||||
shared memory
|
||||
- Updated to hwloc 1.11.0
|
||||
- Updated to sm_20 kernel optimizations for MPI Datatypes
|
||||
- Automatic detection and tuning for 24-core Haswell architecture
|
||||
|
||||
* Bug Fixes (since 2.1 GA):
|
||||
|
||||
- Fix for error with multi-vbuf design for GPU based communication
|
||||
- Fix bugs with hybrid UD/RC/XRC communications
|
||||
- Fix for MPICH putfence/getfence for large messages
|
||||
- Fix for error in collective tuning framework
|
||||
- Fix validation failure with Alltoall with IN_PLACE option
|
||||
- Thanks for Mahidhar Tatineni @SDSC for the report
|
||||
- Fix bug with MPI_Reduce with IN_PLACE option
|
||||
- Thanks to Markus Geimer for the report
|
||||
- Fix for compilation failures with multicast disabled
|
||||
- Thanks to Devesh Sharma @Emulex for the report
|
||||
- Fix bug with MPI_Bcast
|
||||
- Fix IPC selection for shared GPU mode systems
|
||||
- Fix for build time warnings and memory leaks
|
||||
- Fix issues with Dynamic Process Management
|
||||
- Thanks to Neil Spruit for the report
|
||||
- Fix bug in architecture detection code
|
||||
- Thanks to Adam Moody @LLNL for the report
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Oct 14 11:28:41 CEST 2016 - pth@suse.de
|
||||
|
||||
- Create and include modules file for Mvapich2 (bsc#1004628).
|
||||
|
||||
- Remove mvapich2-fix-implicit-decl.patch as the fix is upstream.
|
||||
- Adapt spec file to the changed micro benchmark install directory.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sun Jul 24 14:24:59 UTC 2016 - p.drouand@gmail.com
|
||||
|
||||
- Update to version 2.1
|
||||
* Features and Enhancements (since 2.1rc2):
|
||||
- Tuning for EDR adapters
|
||||
- Optimization of collectives for SDSC Comet system
|
||||
- Based on MPICH-3.1.4
|
||||
- Enhanced startup performance with mpirun_rsh
|
||||
- Checkpoint-Restart Support with DMTCP (Distributed MultiThreaded
|
||||
CheckPointing)
|
||||
- Thanks to the DMTCP project team (http://dmtcp.sourceforge.net/)
|
||||
- Support for handling very large messages in RMA
|
||||
- Optimize size of buffer requested for control messages in large message
|
||||
transfer
|
||||
- Enhanced automatic detection of atomic support
|
||||
- Optimized collectives (bcast, reduce, and allreduce) for 4K processes
|
||||
- Introduce support to sleep for user specified period before aborting
|
||||
- Disable PSM from setting CPU affinity
|
||||
- Install PSM error handler to print more verbose error messages
|
||||
- Introduce retry mechanism to perform psm_ep_open in PSM channel
|
||||
* Bug-Fixes (since 2.1rc2):
|
||||
- Relocate reading environment variables in PSM
|
||||
- Fix issue with automatic process mapping
|
||||
- Fix issue with checkpoint restart when full path is not given
|
||||
- Fix issue with Dynamic Process Management
|
||||
- Fix issue in CUDA IPC code path
|
||||
- Fix corner case in CMA runtime detection
|
||||
* Features and Enhancements (since 2.1rc1):
|
||||
- Based on MPICH-3.1.4
|
||||
- Enhanced startup performance with mpirun_rsh
|
||||
- Checkpoint-Restart Support with DMTCP (Distributed MultiThreaded
|
||||
CheckPointing)
|
||||
- Support for handling very large messages in RMA
|
||||
- Optimize size of buffer requested for control messages in large message
|
||||
transfer
|
||||
- Enhanced automatic detection of atomic support
|
||||
- Optimized collectives (bcast, reduce, and allreduce) for 4K processes
|
||||
- Introduce support to sleep for user specified period before aborting
|
||||
- Disable PSM from setting CPU affinity
|
||||
- Install PSM error handler to print more verbose error messages
|
||||
- Introduce retry mechanism to perform psm_ep_open in PSM channel
|
||||
* Bug-Fixes (since 2.1rc1):
|
||||
- Fix failures with shared memory collectives with checkpoint-restart
|
||||
- Fix failures with checkpoint-restart when using internal communication
|
||||
buffers of different size
|
||||
- Fix undeclared variable error when --disable-cxx is specified with
|
||||
configure
|
||||
- Fix segfault seen during connect/accept with dynamic processes
|
||||
- Fix errors with large messages pack/unpack operations in PSM channel
|
||||
- Fix for bcast collective tuning
|
||||
- Fix assertion errors in one-sided put operations in PSM channel
|
||||
- Fix issue with code getting stuck in infinite loop inside ptmalloc
|
||||
- Fix assertion error in shared memory large message transfers
|
||||
- Fix compilation warnings
|
||||
* Features and Enhancements (since 2.1a):
|
||||
- Based on MPICH-3.1.3
|
||||
- Flexibility to use internal communication buffers of different size for
|
||||
improved performance and memory footprint
|
||||
- Improve communication performance by removing locks from critical path
|
||||
- Enhanced communication performance for small/medium message sizes
|
||||
- Support for linking Intel Trace Analyzer and Collector
|
||||
- Increase the number of connect retry attempts with RDMA_CM
|
||||
- Automatic detection and tuning for Haswell architecture
|
||||
* Bug-Fixes (since 2.1a):
|
||||
- Fix automatic detection of support for atomics
|
||||
- Fix issue with void pointer arithmetic with PGI
|
||||
- Fix deadlock in ctxidup MPICH test in PSM channel
|
||||
- Fix compile warnings
|
||||
* Features and Enhancements (since 2.0):
|
||||
- Based on MPICH-3.1.2
|
||||
- Support for PMI-2 based startup with SLURM
|
||||
- Enhanced startup performance for Gen2/UD-Hybrid channel
|
||||
- GPU support for MPI_Scan and MPI_Exscan collective operations
|
||||
- Optimize creation of 2-level communicator
|
||||
- Collective optimization for PSM-CH3 channel
|
||||
- Tuning for IvyBridge architecture
|
||||
- Add -export-all option to mpirun_rsh
|
||||
- Support for additional MPI-T performance variables (PVARs)
|
||||
in the CH3 channel
|
||||
- Link with libstdc++ when building with GPU support
|
||||
(required by CUDA 6.5)
|
||||
* Bug-Fixes (since 2.0):
|
||||
- Fix error in large message (>2GB) transfers in CMA code path
|
||||
- Fix memory leaks in OFA-IB-CH3 and OFA-IB-Nemesis channels
|
||||
- Fix issues with optimizations for broadcast and reduce collectives
|
||||
- Fix hang at finalize with Gen2-Hybrid/UD channel
|
||||
- Fix issues for collectives with non power-of-two process counts
|
||||
- Make ring startup use HCA selected by user
|
||||
- Increase counter length for shared-memory collectives
|
||||
- Use download Url as source
|
||||
- Some other minor improvements
|
||||
- Add mvapich2-fix-implicit-decl.patch
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Oct 9 13:32:28 CEST 2014 - pth@suse.de
|
||||
|
||||
- Don't provide the full source uri as build servis can't handle it.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Oct 8 17:12:27 CEST 2014 - pth@suse.de
|
||||
|
||||
- Only run autogen.sh if the distribution has a new enough automake.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Sep 24 17:06:22 CEST 2014 - pth@suse.de
|
||||
|
||||
- Update to mvapich2 2.0 GMC:
|
||||
* Features and Enhancements (since 2.0rc2):
|
||||
- Consider CMA in collective tuning framework
|
||||
|
||||
* Bug-Fixes (since 2.0rc2):
|
||||
- Fix bug when disabling registration cache
|
||||
- Fix shared memory window bug when shared memory collectives
|
||||
are disabled.
|
||||
- Fix mpirun_rsh bug when running mpmd programs with no arguments
|
||||
|
||||
- Exclude Aarch64 for the time being as asm/timex.h seems to be missing
|
||||
from the glibc kernel headers.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Jun 3 11:24:34 CEST 2014 - pth@suse.de
|
||||
|
||||
- Update to OFED 3.12 final.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon May 26 13:02:24 CEST 2014 - pth@suse.de
|
||||
|
||||
- Update to 2.0rc2:
|
||||
* Features and Enhancements (since 2.0rc1):
|
||||
- CMA support is now enabled by default
|
||||
- Optimization of collectives with CMA support
|
||||
- RMA optimizations for shared memory and atomic operations
|
||||
- Tuning RGET and Atomics operations
|
||||
- Tuning RDMA FP-based communication
|
||||
- MPI-T support for additional performance and control variables
|
||||
- The --enable-mpit-pvars=yes configuration option will now
|
||||
enable only MVAPICH2 specific variables
|
||||
- Large message transfer support for PSM interface
|
||||
- Optimization of collectives for PSM interface
|
||||
- Updated to hwloc v1.9
|
||||
|
||||
* Bug-Fixes (since 2.0rc1):
|
||||
- Fix multicast hang when there is a single process on one node
|
||||
and more than one process on other nodes
|
||||
- Fix non-power-of-two usage of scatter-doubling-allgather algorithm
|
||||
- Fix for bcastzero type hang during finalize
|
||||
- Enhanced handling of failures in RDMA_CM based
|
||||
connection establishment
|
||||
- Fix for a hang in finalize when using RDMA_CM
|
||||
- Finish receive request when RDMA READ completes in RGET protocol
|
||||
- Always use direct RDMA when flush is used
|
||||
- Fix compilation error with --enable-g=all in PSM interface
|
||||
- Fix warnings and memory leaks
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu May 15 16:01:50 CEST 2014 - pth@suse.de
|
||||
|
||||
- mvapich2-psm-devel requires infinipath-psm-devel.
|
||||
- Remove redundent requires for the devel-static package.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed May 7 15:40:33 UTC 2014 - stefan.fent@suse.com
|
||||
|
||||
- remove typo in mvapich-s390_get_cycles.patch
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Apr 29 13:47:06 CEST 2014 - pth@suse.de
|
||||
|
||||
- Remove bogus 0 from spec.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Apr 28 12:30:12 CEST 2014 - pth@suse.de
|
||||
|
||||
- Remove all additional mvapich specific CFLAGS and extra LIBS.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Apr 25 09:41:47 CEST 2014 - pth@suse.de
|
||||
|
||||
- Fix ExclusiveArch
|
||||
- Only PSM needs explicit configuration so drop the else branch
|
||||
in configure call.
|
||||
- mvapich2 now builds in parallel so tell make.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Apr 24 21:27:06 CEST 2014 - pth@suse.de
|
||||
|
||||
- Build Mvapich2 for Qlogic from its own mvapich2-psm.spec.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Apr 23 18:04:36 CEST 2014 - pth@suse.de
|
||||
|
||||
- Add mvapich2-pthread_yield.patch to define GNU_SOURCE before
|
||||
including pthread.h to get pthread_yield declared.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Apr 23 14:48:07 CEST 2014 - pth@suse.de
|
||||
|
||||
- Don't require libibcommon as it's gone with OFED 3.12.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Apr 16 15:50:22 UTC 2014 - stefan.fent@suse.com
|
||||
|
||||
- add asm code from kernel to properly implement get_cycles on
|
||||
s390 and s390x (bnc #870424) (mvapich-s390_get_cycles.patch)
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Apr 7 14:49:22 CEST 2014 - pth@suse.de
|
||||
|
||||
- Fix spec so that testsuite builds correctly.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sat Apr 5 20:28:49 CEST 2014 - pth@suse.de
|
||||
|
||||
- Update config.* to make it build on ppc64le.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Mar 27 12:56:50 CET 2014 - pth@suse.de
|
||||
|
||||
- Regenerate autotool files to get ppc64le recognized.
|
||||
- The predefined platform macros for s390 are lower case not upcase.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Mar 26 16:15:45 CET 2014 - pth@suse.de
|
||||
|
||||
- Finally got the syntax for conditionals in spec right...
|
||||
- Add a dummy implementation of get_cycles for s390x.
|
||||
- Update to 2.0rc1 as this is a MPI-3 implementation. For
|
||||
detailed changes see.
|
||||
- Fix options passed to mpi-selector
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Mar 25 14:42:43 CET 2014 - pth@suse.de
|
||||
|
||||
- Include the two COPYRIGHT files in the package.
|
||||
- BuildRequire kernel-headers on s390x.
|
||||
- Fix spec file
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Mar 5 14:04:47 CET 2014 - pth@suse.de
|
||||
|
||||
- Compile with support for PSM on ix86 (fate#315889).
|
||||
- mvapich2 has a testsuite, so run it from a separate spec file.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Feb 10 13:13:39 CET 2014 - pth@suse.de
|
||||
|
||||
- Update to 1.9:
|
||||
- Remove mvapich2-1.0.2-non-void-rtn.patch as the changes are in
|
||||
the upstream source.
|
||||
- Reformat BuildRequires
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Jan 24 19:15:39 CET 2014 - pth@suse.de
|
||||
|
||||
- Update to OFED 3.12 daily.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Feb 29 00:00:00 CET 2008 - - jjolly@suse.de
|
||||
|
||||
- Update to 1.0.2 from OFED 1.3 GA release
|
||||
- Minor changes to return value patch
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Jan 31 00:00:00 CET 2008 - - jjolly@suse.de
|
||||
|
||||
- Update to 1.0.1 from OFED 1.3 rc2
|
||||
- Fixed several 'undefined return value' compile errors
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Jul 10 00:00:00 CET 2007 - - hvogel@suse.de
|
||||
|
||||
- Initial Package, Version 0.9.8
|
||||
|
||||
247
mvapich2.spec
Normal file
247
mvapich2.spec
Normal file
@ -0,0 +1,247 @@
|
||||
#
|
||||
# spec file for package mvapich2
|
||||
#
|
||||
# Copyright (c) 2017 SUSE LINUX GmbH, Nuernberg, Germany.
|
||||
#
|
||||
# All modifications and additions to the file contributed by third parties
|
||||
# remain the property of their copyright owners, unless otherwise agreed
|
||||
# upon. The license for this file, and modifications and additions to the
|
||||
# file, is the same license as for the pristine package itself (unless the
|
||||
# license for the pristine package is not an Open Source License, in which
|
||||
# case the license is the MIT License). An "Open Source License" is a
|
||||
# license that conforms to the Open Source Definition (Version 1.9)
|
||||
# published by the Open Source Initiative.
|
||||
|
||||
# Please submit bugfixes or comments via http://bugs.opensuse.org/
|
||||
#
|
||||
|
||||
|
||||
#############################################################################
|
||||
# #
|
||||
# NOTE: If you modify this spec file, or the .changes file you MUST run #
|
||||
# 'bash ./pre_checkin.sh' to create spec and changes for #
|
||||
# mvapich2-testuite. #
|
||||
# #
|
||||
#############################################################################
|
||||
|
||||
Name: mvapich2
|
||||
Summary: OSU MVAPICH2 MPI package
|
||||
License: BSD-3-Clause
|
||||
Group: Development/Libraries/Parallel
|
||||
Version: 2.2
|
||||
Release: 0
|
||||
Source0: http://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich2-%{version}.tar.gz
|
||||
Source1: mpivars.sh
|
||||
Source2: mpivars.csh
|
||||
Patch0: mvapich-s390_get_cycles.patch
|
||||
Patch1: mvapich2-pthread_yield.patch
|
||||
Url: http://mvapich.cse.ohio-state.edu/overview/mvapich2/
|
||||
BuildRoot: %{_tmppath}/%{name}-%{version}-build
|
||||
BuildRequires: autoconf
|
||||
BuildRequires: autoconf
|
||||
BuildRequires: automake
|
||||
BuildRequires: automake
|
||||
BuildRequires: bison
|
||||
BuildRequires: gcc-c++
|
||||
BuildRequires: gcc-fortran
|
||||
BuildRequires: libibmad-devel
|
||||
# For transition to rdma-core make sure the new packages are selected
|
||||
# Once the transition is made the version check can be removed
|
||||
BuildRequires: libibumad-devel >= 12
|
||||
BuildRequires: libibverbs-devel >= 12
|
||||
BuildRequires: librdmacm-devel >= 12
|
||||
%ifnarch s390 s390x
|
||||
BuildRequires: libnuma-devel
|
||||
%endif
|
||||
BuildRequires: libtool
|
||||
BuildRequires: libtool
|
||||
BuildRequires: mpi-selector
|
||||
BuildRequires: python-devel
|
||||
BuildRequires: sysfsutils
|
||||
BuildRequires: xorg-x11-devel
|
||||
# mvapich needs asm/timex.h which seems to be missing from the glibc kernel headers
|
||||
ExcludeArch: aarch64 armv7hl
|
||||
|
||||
%if "%{name}" == "mvapich2-psm"
|
||||
ExclusiveArch: %ix86 x86_64
|
||||
BuildRequires: infinipath-psm-devel
|
||||
%ifarch x86_64
|
||||
BuildRequires: libpsm2-devel
|
||||
%endif
|
||||
%endif
|
||||
|
||||
Requires: mpi-selector
|
||||
|
||||
%define _prefix /usr/%_lib/mpi/gcc/mvapich2
|
||||
%define _libexecdir %{_prefix}/%{_lib}
|
||||
%define _benchmarkdir %{_libexecdir}/osu-micro-benchmarks
|
||||
|
||||
%description
|
||||
This is an MPI-3 implementation which includes all MPI-1 features. It
|
||||
is based on MPICH2 and MVICH.
|
||||
|
||||
%if "%{name}" == "mvapich2" || "%{name}" == "mvapich2-psm"
|
||||
|
||||
%package devel
|
||||
Summary: OSU MVAPICH2 MPI package
|
||||
Group: Development/Libraries/Parallel
|
||||
Requires: %{name} = %{version}
|
||||
Requires: libibumad-devel
|
||||
Requires: libibverbs-devel
|
||||
Requires: librdmacm-devel
|
||||
%if "%{name}" == "mvapich2-psm"
|
||||
Requires: infinipath-psm-devel
|
||||
%ifarch x86_64
|
||||
Requires: libpsm2-devel
|
||||
%endif
|
||||
%endif
|
||||
|
||||
%description devel
|
||||
This is an MPI-2 implementation which includes all MPI-1 features. It
|
||||
is based on MPICH2 and MVICH.
|
||||
|
||||
|
||||
|
||||
%package devel-static
|
||||
Summary: OSU MVAPICH2 MPI package - static libraries
|
||||
Group: Development/Libraries/Parallel
|
||||
Requires: %{name}-devel = %{version}
|
||||
|
||||
%description devel-static
|
||||
This is an MPI-3 implementation which includes all MPI-1 and MPI-2 features. It
|
||||
is based on MPICH2 and MVICH. This package contains the static libraries
|
||||
|
||||
%endif
|
||||
|
||||
%prep
|
||||
%setup -q -n mvapich2-%{version}%{?rc_ver}
|
||||
%patch0
|
||||
%patch1
|
||||
cp /usr/share/automake*/config.* .
|
||||
|
||||
%build
|
||||
#./autogen.sh
|
||||
%configure --prefix=%_prefix --libdir=%_libdir --mandir=%_mandir --sysconfdir=%_sysconfdir --libexecdir=%{_libexecdir} \
|
||||
%if "%{name}" == "mvapich2-psm"
|
||||
--with-device=ch3:psm \
|
||||
%endif
|
||||
--without-mpe
|
||||
make %{?_smp_mflags} V=1
|
||||
|
||||
%if "%{name}" == "mvapich2-testsuite"
|
||||
%check
|
||||
make V=1 check
|
||||
%endif
|
||||
|
||||
%install
|
||||
make DESTDIR=%{buildroot} V=1 install
|
||||
# make and install mpivars files
|
||||
sed 's,prefix,%_prefix,g' %{S:1} > %{buildroot}%{_bindir}/mpivars.sh
|
||||
sed 's,prefix,%_prefix,g' %{S:2} > %{buildroot}%{_bindir}/mpivars.csh
|
||||
rm -f %{buildroot}%{_libdir}/libfmpich.la \
|
||||
%{buildroot}%{_libdir}/libmpich.la \
|
||||
%{buildroot}%{_libdir}/libmpichcxx.la \
|
||||
%{buildroot}%{_libdir}/libmpichf90.la \
|
||||
%{buildroot}%{_libdir}/libmpl.la \
|
||||
%{buildroot}%{_libdir}/libopa.la \
|
||||
%{buildroot}%{_libdir}/libmpi.la \
|
||||
%{buildroot}%{_libdir}/libmpicxx.la \
|
||||
%{buildroot}%{_libdir}/libmpifort.la
|
||||
|
||||
%if "%{name}" == "mvapich2-testsuite"
|
||||
rm -rf %{buildroot}%{_libdir}/pkgconfig
|
||||
rm -rf %{buildroot}%{_includedir}
|
||||
rm -rf %{buildroot}%{_mandir}/man3/*
|
||||
rm -rf %{buildroot}%{_libdir}/*.so
|
||||
rm -rf %{buildroot}%{_libdir}/pkgconfig/mvapich2.pc
|
||||
rm -rf %{buildroot}%{_libdir}/pkgconfig/openpa.pc
|
||||
|
||||
rm -rf %{buildroot}%{_libdir}/*.a
|
||||
%endif
|
||||
|
||||
install -m 0644 COPYRIGHT* %{buildroot}%{_datadir}/doc/mvapich2
|
||||
install -m 0644 CHANGE* %{buildroot}%{_datadir}/doc/mvapich2
|
||||
|
||||
%if "%{name}" != "mvapich2-testsuite"
|
||||
mkdir -p %{buildroot}/usr/share/modules/gnu-mvapich2
|
||||
|
||||
cat << EOF > %{buildroot}/usr/share/modules/gnu-mvapich2/%{version}
|
||||
#%%Module
|
||||
proc ModulesHelp { } {
|
||||
global dotversion
|
||||
puts stderr "\tLoads the gnu - mvapich2 %{version} Environment"
|
||||
}
|
||||
|
||||
module-whatis "Loads the gnu mvapich2 %{version} Environment."
|
||||
conflict gnu-mvapich2
|
||||
prepend-path PATH %{_bindir}
|
||||
prepend-path INCLUDE %{_includedir}
|
||||
prepend-path INCLUDE %{_libdir}
|
||||
prepend-path MANPATH %{_mandir}
|
||||
prepend-path LD_LIBRARY_PATH %{_libdir}
|
||||
|
||||
EOF
|
||||
|
||||
cat << EOF > %{buildroot}/usr/share/modules/gnu-mvapich2/.version
|
||||
#%%Module1.0
|
||||
set ModulesVersion "%{version}"
|
||||
|
||||
EOF
|
||||
%endif
|
||||
|
||||
%post
|
||||
/sbin/ldconfig
|
||||
/usr/bin/mpi-selector \
|
||||
--register %{name}-%{version} \
|
||||
--source-dir %{_bindir} \
|
||||
--yes
|
||||
|
||||
%postun
|
||||
/sbin/ldconfig
|
||||
/usr/bin/mpi-selector --unregister %{name}-%{version} --yes --silent
|
||||
|
||||
%files
|
||||
%defattr(-, root, root)
|
||||
%doc %{_datadir}/doc
|
||||
%dir /usr/%_lib/mpi
|
||||
%dir /usr/%_lib/mpi/gcc
|
||||
%dir /usr/%_lib/mpi/gcc/mvapich2
|
||||
%dir %{_prefix}
|
||||
%dir %{_bindir}
|
||||
%dir %{_datadir}
|
||||
%if "%{name}" == "mvapich2" || "%{name}" == "mvapich2-psm"
|
||||
%dir /usr/share/modules
|
||||
%endif
|
||||
%if "%{name}" == "mvapich2"
|
||||
%dir %{_includedir}
|
||||
%endif
|
||||
%dir %{_mandir}
|
||||
%dir %{_mandir}/man1
|
||||
%dir %{_mandir}/man3
|
||||
%dir %{_libdir}
|
||||
%dir %{_libexecdir}
|
||||
%{_bindir}/*
|
||||
%{_libexecdir}/osu-micro-benchmarks
|
||||
%if "%{name}" == "mvapich2" || "%{name}" == "mvapich2-psm"
|
||||
/usr/share/modules/gnu-mvapich2
|
||||
%endif
|
||||
%{_mandir}/man1/*
|
||||
%{_libdir}/*.so.*
|
||||
|
||||
%if "%{name}" == "mvapich2" || "%{name}" == "mvapich2-psm"
|
||||
%files devel
|
||||
%defattr(-,root,root)
|
||||
%dir %{_libdir}/pkgconfig
|
||||
%{_mandir}/man3/*
|
||||
%{_includedir}
|
||||
%{_libdir}/*.so
|
||||
%{_libdir}/pkgconfig/mvapich2.pc
|
||||
%{_libdir}/pkgconfig/openpa.pc
|
||||
|
||||
%files devel-static
|
||||
%defattr(-,root,root)
|
||||
%{_libdir}/*.a
|
||||
|
||||
%endif
|
||||
|
||||
%changelog
|
||||
10
pre_checkin.sh
Normal file
10
pre_checkin.sh
Normal file
@ -0,0 +1,10 @@
|
||||
#!/bin/bash
|
||||
# This script has to be run prior to a check-in if changes were done
|
||||
# to spec and/or changes
|
||||
sed -e "s,^\(Name:.*mvapich2\),\1-testsuite," mvapich2.spec > mvapich2-testsuite.spec
|
||||
sed -e "s,^\(Name:.*mvapich2\),\1-psm," mvapich2.spec > mvapich2-psm.spec
|
||||
cp mvapich2.changes mvapich2-testsuite.changes
|
||||
cp mvapich2.changes mvapich2-psm.changes
|
||||
|
||||
osc service localrun format_spec_file
|
||||
|
||||
Loading…
Reference in New Issue
Block a user