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Accepting request 1198939 from science:HPC

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OBS-URL: https://build.opensuse.org/request/show/1198939
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/mvapich2?expand=0&rev=39
This commit is contained in:
Ana Guerrero 2024-09-05 13:47:39 +00:00 committed by Git OBS Bridge
commit d6e5d56ca7
6 changed files with 124 additions and 25 deletions
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28
0001-Drop-real128.patch
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@ -1,18 +1,17 @@
From 8f0c71281b5dccd70a3f1d4204e3cc6bc7201ceb Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Zbigniew=20J=C4=99drzejewski-Szmek?=
<zbyszek@arm03-packager01.cloud.fedoraproject.org>
Date: Wed, 28 Aug 2019 10:57:55 +0000
Subject: [PATCH] Drop real128
commit d08634eff711fd6c68bc197aec538a9f15a067eb
Author: Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
Date: Fri Jun 5 10:07:37 2020 +0200
https://github.com/pmodels/mpich/issues/4005
---
.../fortran/use_mpi_f08/mpi_f08_types.f90 | 24 -------------------
1 file changed, 24 deletions(-)
0001 Drop real128
See https://github.com/pmodels/mpich/issues/4005
Signed-off-by: Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
diff --git a/src/binding/fortran/use_mpi_f08/mpi_f08_types.f90 b/src/binding/fortran/use_mpi_f08/mpi_f08_types.f90
index f8b0fa811..46bdf6972 100644
--- a/src/binding/fortran/use_mpi_f08/mpi_f08_types.f90
+++ b/src/binding/fortran/use_mpi_f08/mpi_f08_types.f90
diff --git src/binding/fortran/use_mpi_f08/mpi_f08_types.f90 src/binding/fortran/use_mpi_f08/mpi_f08_types.f90
index f8b0fa811e01..46bdf6972dde 100644
--- src/binding/fortran/use_mpi_f08/mpi_f08_types.f90
+++ src/binding/fortran/use_mpi_f08/mpi_f08_types.f90
@@ -248,10 +248,8 @@ interface MPI_Sizeof
module procedure MPI_Sizeof_xint64
module procedure MPI_Sizeof_xreal32
@ -69,6 +68,3 @@ index f8b0fa811..46bdf6972 100644
subroutine MPI_Status_f2f08(f_status, f08_status, ierror)
integer, intent(in) :: f_status(MPI_STATUS_SIZE)
type(MPI_Status), intent(out) :: f08_status
--
2.21.0

56
mrail-fix-incompatible-pointer-issues.patch Normal file
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@ -0,0 +1,56 @@
commit 0b2339b6c8d2221a0db1e2f00b87025c7aac4fb7
Author: Nicolas Morey <nmorey@suse.com>
Date: Thu Sep 5 08:51:06 2024 +0200
mrail: fix incompatible pointer issues
GCC 14 is complaining about incompatible pointer types.
Fix the function definition so quiet them.
Signed-off-by: Nicolas Morey <nmorey@suse.com>
diff --git src/mpid/ch3/channels/mrail/src/gen2/ofed_abstraction.h src/mpid/ch3/channels/mrail/src/gen2/ofed_abstraction.h
index 07190c5177e6..36462b6bbd64 100644
--- src/mpid/ch3/channels/mrail/src/gen2/ofed_abstraction.h
+++ src/mpid/ch3/channels/mrail/src/gen2/ofed_abstraction.h
@@ -191,10 +191,11 @@ typedef struct _rdma_ops_t {
int (*get_cm_event)(struct rdma_event_channel *channel,
struct rdma_cm_event **event);
int (*ack_cm_event)(struct rdma_cm_event *event);
- int (*getaddrinfo) (char *node, char *service, struct rdma_addrinfo *hints,
- struct rdma_addrinfo **res);
- int (*freeaddrinfo)(struct rdma_addrinfo *res);
- char* (*event_str)(enum rdma_cm_event_type event);
+ int (*getaddrinfo) (const char *node, const char *service,
+ const struct rdma_addrinfo *hints,
+ struct rdma_addrinfo **res);
+ void (*freeaddrinfo)(struct rdma_addrinfo *res);
+ const char* (*event_str)(enum rdma_cm_event_type event);
struct ibv_context** (*get_devices) (int *num_devices);
void (*free_devices) (struct ibv_context **list);
} rdma_ops_t;
@@ -208,13 +209,13 @@ extern void *rdma_dl_handle;
typedef struct _umad_ops_t {
int (*init)(void);
int (*done)(void);
- int (*get_ca)(char *ca_name, umad_ca_t *ca);
+ int (*get_ca)(const char *ca_name, umad_ca_t *ca);
int (*release_ca)(umad_ca_t *ca);
void* (*get_mad)(void *umad);
int (*send)(int portid, int agentid, void *umad, int length,
int timeout_ms, int retries);
int (*recv)(int portid, void *umad, int *length, int timeout_ms);
- int (*open_port)(char *ca_name, int portnum);
+ int (*open_port)(const char *ca_name, int portnum);
int (*close_port)(int portid);
int (*u_register)(int portid, int mgmt_class, int mgmt_version,
uint8_t rmpp_version, long method_mask[16 / sizeof(long)]);
@@ -309,7 +310,7 @@ do { \
#else
#define MV2_DLSYM(_struct_, _handle_, _prefix_, _function_) \
do { \
- _struct_._function_ = _prefix_##_##_function_; \
+ _struct_._function_ = (void*)_prefix_##_##_function_; \
} while (0)
#endif

10
mvapich2.changes
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@ -1,3 +1,13 @@
-------------------------------------------------------------------
Thu Sep 5 07:24:42 UTC 2024 - Nicolas Morey <nicolas.morey@suse.com>
- Add patches to fix compilation errors with GCC >= 14:
- mrail-fix-incompatible-pointer-issues.patch
- util-add-missing-include.patch
- psm-add-missing-declaration.patch
- Refresh 0001-Drop-real128.patch to work with patch -p0
- Switch to autopatch
-------------------------------------------------------------------
Tue Jun 25 13:22:53 UTC 2024 - Nicolas Morey <nicolas.morey@suse.com>

15
mvapich2.spec
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@ -216,6 +216,10 @@ Patch4: reproducible.patch
Patch5: pass-correct-size-to-snprintf.patch
Patch6: mvapich2-allow-building-with-external-hwloc.patch
Patch7: mvapich2-openpa-add-memory-barriers.patch
Patch8: mrail-fix-incompatible-pointer-issues.patch
Patch9: util-add-missing-include.patch
Patch10: psm-add-missing-declaration.patch
## Armv7 specific patches
# PATCH-FIX-UPSTREAM 0001-Drop-real128.patch (https://github.com/pmodels/mpich/issues/4005)
Patch50: 0001-Drop-real128.patch
@ -347,18 +351,11 @@ is based on MPICH2 and MVICH. This package contains the static libraries
%{?with_hpc:%hpc_debug}
%setup -q -n mvapich2-%{version}%{?rc_ver}
%patch -P 0
%patch -P 2
%patch -P 3
%patch -P 4
%patch -P 5 -p1
%patch -P 6
%patch -P 7
%autopatch -M 49 -p0
# Only apply these patches on Armv7
%ifarch armv7hl
%patch -P 50 -p1
%patch -P 51
%autopatch -m 50 -p0
%endif
cp /usr/share/automake*/config.* .

20
psm-add-missing-declaration.patch Normal file
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@ -0,0 +1,20 @@
commit 54cb73337039c22aed5b2b4ee7b19aeb8df33b2c
Author: Nicolas Morey <nmorey@suse.com>
Date: Thu Sep 5 10:11:46 2024 +0200
psm: add missing declaration
Signed-off-by: Nicolas Morey <nmorey@suse.com>
diff --git src/mpid/ch3/channels/psm/src/psm_entry.c src/mpid/ch3/channels/psm/src/psm_entry.c
index 125194750a0f..4ff539b65635 100755
--- src/mpid/ch3/channels/psm/src/psm_entry.c
+++ src/mpid/ch3/channels/psm/src/psm_entry.c
@@ -21,6 +21,7 @@
#include <upmi.h>
#include "coll_shmem.h"
extern int g_mv2_num_cpus;
+extern int MPIDI_Get_num_nodes();
volatile unsigned int MPIDI_CH3I_progress_completion_count = 0; //ODOT: what is this ?
volatile int MPIDI_CH3I_progress_blocked = FALSE;

20
util-add-missing-include.patch Normal file
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@ -0,0 +1,20 @@
commit e0028839a9bee6996816ae5be43f8a1a7faa6580
Author: Nicolas Morey <nmorey@suse.com>
Date: Thu Sep 5 10:00:12 2024 +0200
util: add missing include
Signed-off-by: Nicolas Morey <nmorey@suse.com>
diff --git src/util/mem/mpit.c src/util/mem/mpit.c
index 19c2caf27cb3..17f6e6115291 100644
--- src/util/mem/mpit.c
+++ src/util/mem/mpit.c
@@ -18,6 +18,7 @@
#include <stdio.h>
#include <search.h>
#include <stdint.h>
+#include <sys/shm.h>
#ifdef USE_MEMORY_TRACING
# define mpit_malloc(a, line, file) \