Accepting request 1235695 from science

- Update to version 5.13.2:
  * Update Insitu logic to use script filename (instead of full
    path) when searching PYTHONPATH directories (details).
  * Fixed CLI error loading multiple-file series (details).
  * Fixed CLI error that was opening two copies of single file
    specified in command line (details).
  * Fixed pvbatch syntax warning messages (“invalid escape
    sequence”) (details).
  * Fixed spreadsheet view to update correctly when timestep is
    reset to 0 (details).
  * Fixed problems loading state file when remote volume rendering
    is used (details).
  * More info at:
    <https://www.kitware.com/paraview-5-13-2-release-notes/>.
- Use internal pegtl lib due to version incompatibility.
- Disable ZFP due to building problems with internal/external.
- Added sed command to fix linker flags in build.ninja.
- Removed unnecessary shebang at rtImageTest.py.
- Dropped patches:
  * 0001-Fix-missing-fmt-ranges.h-include-in-ioss-ThirdParty-.patch
  * fix-CVE-2024-50602.patch
- Add patches:
  * 0001-Add-missing-libm-link-library-for-bundled-ExodusII.patch
- Various spec file cleanups and fixes:
  * Fix version dependent bcond's for TW
  * Remove unused netcdf-cxx build dependency
  * Remove unnecessary sqlite and wget binary build dependencies
  * Use system libharu, fast-float and fmt when available
- Fix build with recent fmt, add
  * 0001-Fix-missing-fmt-ranges.h-include-in-ioss-ThirdParty-.patch

OBS-URL: https://build.opensuse.org/request/show/1235695
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/paraview?expand=0&rev=56

0001-Add-missing-libm-link-library-for-bundled-ExodusII.patch

@@ -0,0 +1,22 @@
+From 11749efe6bbe30e8d9a88b624c356a45c3207fd2 Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Stefan=20Br=C3=BCns?= <stefan.bruens@rwth-aachen.de>
+Date: Thu, 12 Dec 2024 17:27:49 +0100
+Subject: [PATCH] Add missing libm link library for bundled ExodusII
+
+---
+ VTK/ThirdParty/exodusII/vtkexodusII/CMakeLists.txt | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/VTK/ThirdParty/exodusII/vtkexodusII/CMakeLists.txt b/VTK/ThirdParty/exodusII/vtkexodusII/CMakeLists.txt
+index e3b10bb9..8e4ccd6e 100644
+--- a/VTK/ThirdParty/exodusII/vtkexodusII/CMakeLists.txt
++++ b/VTK/ThirdParty/exodusII/vtkexodusII/CMakeLists.txt
+@@ -338,4 +338,5 @@ vtk_module_include(VTK::exodusII
+     "$<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/include>")
+ vtk_module_link(VTK::exodusII
+   PRIVATE
++    m
+     Threads::Threads)
+-- 
+2.47.1
+

ParaView-v5.12.1.tar.xz

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:927f880c13deb6dde4172f4727d2b66f5576e15237b35778344f5dd1ddec863e
-size 129307060

ParaView-v5.13.2.tar.xz

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:4e116250f8e1a9c480f97c5696c9cd72b4d4998b039ca46da8b224f27445f13e
+size 147014296

paraview-rpmlintrc

@@ -10,4 +10,4 @@ addFilter("devel-file-in-non-devel-package .*/usr/lib.*/paraview-[0-9.]*/plugins
 addFilter("python3-paraview.* explicit-lib-dependency python3-matplotlib")
 
 # 0 size files are referenced in cmake files
-addFilter("paraview-devel.* zero-length")
+addFilter("paraview.* zero-length")

paraview.changes

@@ -1,3 +1,46 @@
+-------------------------------------------------------------------
+Thu Jan 06 00:01:00 UTC 2025 - Vicente Adolfo Bolea Sanchez <vicente.bolea@gmail.com>
+
+- Update to version 5.13.2:
+  * Update Insitu logic to use script filename (instead of full
+    path) when searching PYTHONPATH directories (details).
+  * Fixed CLI error loading multiple-file series (details).
+  * Fixed CLI error that was opening two copies of single file
+    specified in command line (details).
+  * Fixed pvbatch syntax warning messages (“invalid escape
+    sequence”) (details).
+  * Fixed spreadsheet view to update correctly when timestep is
+    reset to 0 (details).
+  * Fixed problems loading state file when remote volume rendering
+    is used (details).
+  * More info at:
+    <https://www.kitware.com/paraview-5-13-2-release-notes/>.
+- Use internal pegtl lib due to version incompatibility.
+- Disable ZFP due to building problems with internal/external.
+- Added sed command to fix linker flags in build.ninja.
+- Removed unnecessary shebang at rtImageTest.py.
+- Dropped patches:
+  * 0001-Fix-missing-fmt-ranges.h-include-in-ioss-ThirdParty-.patch
+  * fix-CVE-2024-50602.patch
+- Add patches:
+  * 0001-Add-missing-libm-link-library-for-bundled-ExodusII.patch
+
+-------------------------------------------------------------------
+Sat Jan  4 05:54:25 UTC 2025 - Stefan Brüns <stefan.bruens@rwth-aachen.de>
+
+- Various spec file cleanups and fixes:
+  * Fix version dependent bcond's for TW
+  * Remove unused netcdf-cxx build dependency
+  * Remove unnecessary sqlite and wget binary build dependencies
+  * Use system libharu, fast-float and fmt when available
+- Fix build with recent fmt, add
+  * 0001-Fix-missing-fmt-ranges.h-include-in-ioss-ThirdParty-.patch
+
+-------------------------------------------------------------------
+Fri Dec 20 00:00:00 UTC 2024 - Vicente Adolfo Bolea Sanchez <vicente.bolea@gmail.com>
+
+- Added patch fix-CVE-2024-50602.patch which fixes CVE-2024-50602.
+
 -------------------------------------------------------------------
 Tue May 28 00:00:00 UTC 2024 - Vicente Adolfo Bolea Sanchez <vicente.bolea@gmail.com>
 

paraview.spec

@@ -1,7 +1,7 @@
 #
 # spec file for package paraview
 #
-# Copyright (c) 2024 SUSE LLC
+# Copyright (c) 2025 SUSE LLC
 #
 # All modifications and additions to the file contributed by third parties
 # remain the property of their copyright owners, unless otherwise agreed
@@ -17,11 +17,14 @@
 
 
 %define major_ver 5
-%define minor_ver 12
+%define minor_ver 13
 %define short_ver %{major_ver}.%{minor_ver}
 %define shlib libparaview%{major_ver}_%{minor_ver}
 
-%if 0%{?sle_version} <= 150400 && 0%{?is_opensuse}
+%if 0%{?suse_version} <= 1500
+%bcond_with    fast_float
+%bcond_with    jsoncpp
+%if 0%{?sle_version} <= 150400
 %bcond_with    pugixml
 %bcond_with    verdict
 %else
@@ -29,22 +32,30 @@
 %bcond_without verdict
 %endif
 
-%if 0%{?sle_version} <= 150600 && 0%{?is_opensuse}
+%if 0%{?sle_version} <= 150600
 %bcond_with    jsoncpp
+%bcond_with    fmt
+%bcond_with    haru
 %else
+%bcond_without fmt
+%bcond_without haru
+%endif
+
+%else
+%bcond_without fast_float
+%bcond_without fmt
+%bcond_without haru
 %bcond_without jsoncpp
+%bcond_without pugixml
+%bcond_without verdict
 %endif
 
 %bcond_without nlohmann
 %bcond_without proj
 %bcond_without gl2ps
 
-# Need patched version with HPDF_SHADING
-%bcond_with    haru
-
-%define __builder ninja
 Name:           paraview
-Version:        %{short_ver}.1
+Version:        %{short_ver}.2
 Release:        0
 Summary:        Data analysis and visualization application
 License:        BSD-3-Clause
@@ -53,13 +64,15 @@ URL:            https://www.paraview.org
 Source0:        https://www.paraview.org/files/v%{short_ver}/ParaView-v%{version}.tar.xz
 Source1:        %{name}-rpmlintrc
 # CAUTION: GettingStarted may or may not be updated with each minor version
-Source2:        https://www.paraview.org/files/v%{short_ver}/ParaViewGettingStarted-%{major_ver}.%{minor_ver}.0.pdf
+Source2:        https://www.paraview.org/files/v%{short_ver}/ParaViewGettingStarted-%{major_ver}.%{minor_ver}.2.pdf
 # PATCH-FIX-UPSTREAM paraview-desktop-entry-fix.patch badshah400@gmail.com -- Fix desktop menu entry by inserting proper required categories
 Patch0:         paraview-desktop-entry-fix.patch
 # PATCH-FIX-OPENSUSE fix-libharu-missing-m.patch -- missing libraries for linking (gh#libharu/libharu#213)
-Patch2:         fix-libharu-missing-m.patch
+Patch1:         fix-libharu-missing-m.patch
 # We need to change the default soname for vtk modules.
-Patch3:         fix-soversion-soname.patch
+Patch2:         fix-soversion-soname.patch
+# PATCH-FIX-UPSTREAM
+Patch3:         0001-Add-missing-libm-link-library-for-bundled-ExodusII.patch
 BuildRequires:  Mesa-devel
 BuildRequires:  cgns-devel
 BuildRequires:  cmake >= 3.13
@@ -74,23 +87,18 @@ BuildRequires:  graphviz
 BuildRequires:  hdf5-devel
 BuildRequires:  libboost_graph-devel
 BuildRequires:  libboost_headers-devel
-%if %{with gl2ps}
-BuildRequires:  gl2ps-devel >= 1.4.1
-%endif
-%if %{with haru}
-BuildRequires:  libharu-devel > 2.3.0
-%endif
-BuildRequires:  libnetcdf_c++-devel
 BuildRequires:  ninja
+BuildRequires:  pkgconfig
+BuildRequires:  protobuf21-devel
 BuildRequires:  python3-Sphinx
 BuildRequires:  python3-Twisted
 BuildRequires:  python3-devel
 BuildRequires:  python3-matplotlib
 BuildRequires:  python3-qt5-devel
 BuildRequires:  readline-devel
-BuildRequires:  sqlite3
 BuildRequires:  utfcpp-devel
 BuildRequires:  wget
+BuildRequires:  pkgconfig(CLI11)
 BuildRequires:  pkgconfig(Qt5Core)
 BuildRequires:  pkgconfig(Qt5Gui)
 BuildRequires:  pkgconfig(Qt5Help)
@@ -104,9 +112,6 @@ BuildRequires:  pkgconfig(eigen3) >= 2.91.0
 BuildRequires:  pkgconfig(expat)
 BuildRequires:  pkgconfig(freetype2)
 BuildRequires:  pkgconfig(glew)
-%if %{with jsoncpp}
-BuildRequires:  pkgconfig(jsoncpp) >= 1.9.4
-%endif
 BuildRequires:  pkgconfig(libjpeg)
 BuildRequires:  pkgconfig(liblz4) >= 1.7.3
 BuildRequires:  pkgconfig(liblzma)
@@ -116,27 +121,38 @@ BuildRequires:  pkgconfig(libtiff-4)
 BuildRequires:  pkgconfig(netcdf)
 BuildRequires:  pkgconfig(ogg)
 BuildRequires:  pkgconfig(openssl)
-BuildRequires:  pkgconfig(protobuf)
+BuildRequires:  pkgconfig(proj) >= 5.0.0
 BuildRequires:  pkgconfig(sqlite3)
+BuildRequires:  pkgconfig(theora)
+BuildRequires:  pkgconfig(xt)
+BuildRequires:  pkgconfig(zlib)
+%if %{with fmt}
+BuildRequires:  fmt-10-devel
+%endif
+%if %{with gl2ps}
+BuildRequires:  gl2ps-devel >= 1.4.1
+%endif
+%if %{with haru}
+BuildRequires:  libharu-devel > 2.4.0
+%endif
+%if %{with fast_float}
+BuildRequires:  cmake(FastFloat)
+%endif
+%if %{with jsoncpp}
+BuildRequires:  pkgconfig(jsoncpp) >= 1.9.4
+%endif
 %if %{with nlohmann}
 BuildRequires:  pkgconfig(nlohmann_json)
 %endif
-%if %{with proj}
-BuildRequires:  pkgconfig(proj)
-%endif
 %if %{with pugixml}
 BuildRequires:  pkgconfig(pugixml) >= 1.11
 %endif
 %if %{with verdict}
 BuildRequires:  verdict-devel
 %endif
-BuildRequires:  pkgconfig(CLI11)
-BuildRequires:  pkgconfig(theora)
-BuildRequires:  pkgconfig(xt)
-BuildRequires:  pkgconfig(zlib)
-Recommends:     %{name}-plugins
 Requires:       gnuplot
 Requires:       graphviz
+Recommends:     %{name}-plugins
 # Disable on aarch64 since GLES isn't supported for bundled vtk but is needed for paraview
 ExcludeArch:    aarch64
 
@@ -162,7 +178,7 @@ This package provides the shared libraries for paraview.
 Summary:        Headers for building ParaView plugins or embedding Catalyst
 Group:          Development/Libraries/Other
 Requires:       %{shlib} = %{version}
-Requires:       cmake >= 3.3
+Requires:       cmake >= 3.13
 Requires:       glibc-devel
 Requires:       libboost_thread-devel
 
@@ -203,51 +219,65 @@ This package provides the paraview plugins bundled with the upstream release.
 %autosetup -p1 -n ParaView-v%{version}
 
 # FIX env BASED HASHBANG
-sed -Ei "1{s|#!/usr/bin/env python3|#!/usr/bin/python3|}" Clients/CommandLineExecutables/paraview-config.in
+sed -Ei "1{s|#!%{_bindir}/env python3|#!%{_bindir}/python3|}" Clients/CommandLineExecutables/paraview-config.in
+
+# Fix erroneous dependency on sqlite3 binary
+sed -i -e '/set(vtk_sqlite_build_binary 1)/ s/.*/#\0/' CMakeLists.txt
+
+# Allow other versions for fast_float
+sed -i -e '/VERSION .*/ d' VTK/ThirdParty/fast_float/CMakeLists.txt
 
 %build
-%global _lto_cflags %{_lto_cflags} -ffat-lto-objects
+%global _lto_cflags %{?_lto_cflags} -ffat-lto-objects
+%global __builder ninja
 
 %cmake -DCMAKE_INSTALL_LIBDIR=%{_lib} \
        -DCMAKE_INSTALL_DOCDIR=%{_docdir}/%{name} \
        -DPARAVIEW_BUILD_SHARED_LIBS:BOOL=ON \
-%if 0%{?suse_version} <= 1500
+%if 0%{?suse_version} <= 1500 && 0%{?is_opensuse}
        -DCMAKE_SKIP_RPATH:BOOL=OFF \
 %endif
-       -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON \
-       -DVTK_IGNORE_CMAKE_CXX11_CHECKS:BOOL=ON \
-       -DCMAKE_CXX_EXTENSIONS:BOOL=OFF \
-       -DCMAKE_CXX_STANDARD=17 \
-       -DCMAKE_CXX_STANDARD_REQUIRED:BOOL=ON \
-       -DPARAVIEW_USE_VTKM:BOOL=OFF \
-       -DPARAVIEW_USE_QT:BOOL=ON \
-       -DPARAVIEW_USE_PYTHON:BOOL=ON \
-       -DPARAVIEW_PYTHON_SITE_PACKAGES_SUFFIX=%{_lib}/python%{py3_ver}/site-packages/paraview \
-       -DVTK_PYTHON_OPTIONAL_LINK:BOOL=OFF \
-       -DPARAVIEW_ENABLE_WEB:BOOL=ON \
-       -DVTK_WRAP_PYTHON:BOOL=ON \
-       -DVTK_OPENGL_HAS_OSMESA:BOOL=OFF \
        -DBUILD_EXAMPLES:BOOL=OFF \
        -DBUILD_TESTING:BOOL=OFF \
+       -DCMAKE_CXX_EXTENSIONS:BOOL=OFF \
+       -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON \
+       -DPARAVIEW_BUILD_WITH_EXTERNAL:BOOL=ON \
+       -DPARAVIEW_ENABLE_WEB:BOOL=ON \
+       -DPARAVIEW_INSTALL_DEVELOPMENT_FILES:BOOL=ON \
+       -DPARAVIEW_PYTHON_SITE_PACKAGES_SUFFIX=%{_lib}/python%{py3_ver}/site-packages/paraview \
+       -DPARAVIEW_USE_PYTHON:BOOL=ON \
+       -DPARAVIEW_USE_QT:BOOL=ON \
+       -DPARAVIEW_USE_VTKM:BOOL=OFF \
        -DQtTesting_INSTALL_NO_DEVELOPMENT:BOOL=ON \
        -DVTK_BUILD_QT_DESIGNER_PLUGIN:BOOL=OFF \
-       -DPARAVIEW_INSTALL_DEVELOPMENT_FILES:BOOL=ON \
+       -DVTK_ENABLE_CATALYST:BOOL=ON \
-       -DPARAVIEW_BUILD_WITH_EXTERNAL:BOOL=ON \
+       -DVTK_OPENGL_HAS_OSMESA:BOOL=OFF \
-       -DVTK_MODULE_USE_EXTERNAL_ParaView_vtkcatalyst:BOOL=OFF \
+       -DVTK_PYTHON_OPTIONAL_LINK:BOOL=OFF \
+       -DVTK_WRAP_PYTHON:BOOL=ON \
+       -DVTK_MODULE_ENABLE_VTK_libharu:BOOL=YES \
+       -DVTK_MODULE_ENABLE_VTK_pegtl:BOOL=YES \
+       -DVTK_MODULE_ENABLE_VTK_zfp:BOOL=NO \
        -DVTK_MODULE_USE_EXTERNAL_VTK_exprtk:BOOL=OFF \
-       -DVTK_MODULE_USE_EXTERNAL_VTK_fast_float:BOOL=OFF \
+       -DVTK_MODULE_USE_EXTERNAL_VTK_fast_float:BOOL=%{?with_fast_float:ON}%{!?with_fast_float:OFF} \
-       -DVTK_MODULE_USE_EXTERNAL_VTK_fmt:BOOL=OFF \
+       -DVTK_MODULE_USE_EXTERNAL_VTK_fmt:BOOL=%{?with_fmt:ON}%{!?with_fmt:OFF} \
        -DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=%{?with_gl2ps:ON}%{!?with_gl2ps:OFF} \
        -DVTK_MODULE_USE_EXTERNAL_VTK_ioss:BOOL=OFF \
        -DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=%{?with_jsoncpp:ON}%{!?with_jsoncpp:OFF} \
        -DVTK_MODULE_USE_EXTERNAL_VTK_libharu=%{?with_haru:ON}%{!?with_haru:OFF} \
        -DVTK_MODULE_USE_EXTERNAL_VTK_libproj=%{?with_proj:ON}%{!?with_proj:OFF} \
        -DVTK_MODULE_USE_EXTERNAL_VTK_nlohmannjson=%{?with_nlohmann:ON}%{!?with_nlohmann:OFF} \
+       -DVTK_MODULE_USE_EXTERNAL_VTK_pegtl=NO \
        -DVTK_MODULE_USE_EXTERNAL_VTK_pugixml=%{?with_pugixml:ON}%{!?with_pugixml:OFF} \
        -DVTK_MODULE_USE_EXTERNAL_VTK_token:BOOL=OFF \
        -DVTK_MODULE_USE_EXTERNAL_VTK_verdict=%{?with_verdict:ON}%{!?with_verdict:OFF} \
+       -Wno-dev \
        %{nil}
 
+# ParaView >= 5.13.2 wrongly adds each option of CMAKE_SHARED_LINKER_FLAGS as a single
+# option with multiple -Wl in betwen, this makes the build fail. Correct it manually
+sed -i 's/,-Wl/ -Wl/g' ./build.ninja
+sed -i 's/,-ffat-lto-objects/ -ffat-lto-objects/g' ./build.ninja
+
 %cmake_build
 
 %install
@@ -256,15 +286,15 @@ find . \( -name \*.txt -o -name \*.xml -o -name '*.[ch]' -o -name '*.[ch][px][px
 %cmake_install
 
 # Unnecessary hash-bang
-sed -i "1{\@/usr/bin/env@d}" %{buildroot}%{python3_sitearch}/paraview/vtkmodules/generate_pyi.py
+sed -i "1{\@%{_bindir}/env@d}" %{buildroot}%{python3_sitearch}/paraview/vtkmodules/generate_pyi.py
+sed -i "1{\@%{_bindir}/env@d}" %{buildroot}%{python3_sitearch}/paraview/vtkmodules/test/rtImageTest.py
 
 # INSTALL DOCUMENTATION USED BY THE HELP MENU IN MAIN APP
-install -Dm0644 %{S:2} %{buildroot}%{_datadir}/%{name}-%{short_ver}/doc/GettingStarted.pdf
+install -Dm0644 %{SOURCE2} %{buildroot}%{_datadir}/%{name}-%{short_ver}/doc/GettingStarted.pdf
 
 %fdupes %{buildroot}/
 
 %post -n %{shlib} -p /sbin/ldconfig
-
 %postun -n %{shlib} -p /sbin/ldconfig
 
 %files