forked from pool/python-astropy
Benjamin Greiner
dcc0d037e9
Bug Fixes
astropy.io.fits
* In fits.io.getdata do not fall back to first non-primary
extension when user explicitly specifies an extension. [#11860]
* Ensure multidimensional masked columns round-trip properly to
FITS. [#11911]
* Ensure masked times round-trip to FITS, even if
multi-dimensional. [#11913]
* Raise ValueError if an np.float32 NaN/Inf value is assigned to
a header keyword. [#11922]
astropy.modeling
* Fixed bug in fix_inputs handling of bounding boxes. [#11908]
astropy.table
* Fix an error when converting to pandas any Table subclass that
automatically adds a table index when the table is created. An
example is a binned TimeSeries table. [#12018]
astropy.units
* Ensure that unpickling quantities and units in new sessions
does not change hashes and thus cause problems with (de)
composition such as getting different answers from the .si
attribute. [#11879]
* Fixed cannot import name imperial from astropy.units
namespace. [#11977]
astropy.utils
* Ensure any .info on Masked instances is propagated correctly
when viewing or slicing. As a consequence, MaskedQuantity can
now be correctly written to, e.g., ECSV format with
serialize_method='data_mask'. [#11910]
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=58
234 lines
7.3 KiB
RPMSpec
234 lines
7.3 KiB
RPMSpec
#
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# spec file
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#
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# Copyright (c) 2021 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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%global flavor @BUILD_FLAVOR@%{nil}
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%if "%{flavor}" == "test"
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%bcond_without test
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%define psuffix -test
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%else
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%bcond_with test
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%define psuffix %{nil}
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%endif
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%define binaries fitsdiff fitsheader fitscheck fitsinfo fits2bitmap samp_hub showtable volint wcslint
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# backwards compatibility for --without systemlibs
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%bcond_without systemlibs
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%if 0%{suse_version} <= 1500 || ! %{with systemlibs}
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# Use the bundled libraries for Leap 15.X, because the versions in the repos are too old
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%bcond_with system_cfitsio
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%bcond_with system_expat
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%bcond_with system_wcslib
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%else
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%bcond_without system_cfitsio
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%bcond_without system_expat
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%bcond_without system_wcslib
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%endif
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%if %{with system_cfitsio}
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%define unbundle_cfitsio export ASTROPY_USE_SYSTEM_CFITSIO=1
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%endif
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%if %{with system_expat}
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%define unbundle_expat export ASTROPY_USE_SYSTEM_EXPAT=1
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%endif
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%if %{with system_wcslib}
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%define unbundle_wcs export ASTROPY_USE_SYSTEM_WCSLIB=1
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%endif
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%define unbundle_libs %{?unbundle_cfitsio} \
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%{?unbundle_expat} \
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%{?unbundle_wcs}
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%{?!python_module:%define python_module() python3-%{**}}
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%define skip_python2 1
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# upcoming python3 multiflavor: minimum supported python is 3.7
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%define skip_python36 1
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Name: python-astropy%{psuffix}
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Version: 4.3.1
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Release: 0
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Summary: Community-developed python astronomy tools
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License: BSD-3-Clause
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URL: https://astropy.org
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Source: https://files.pythonhosted.org/packages/source/a/astropy/astropy-%{version}.tar.gz
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# Mark wcs headers as false positives for devel-file-in-non-devel-package
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# These are used by the python files so they must be available.
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Source100: python-astropy-rpmlintrc
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# https://docs.astropy.org/en/v4.3post1/install.html#requirements
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# PATCH-FIX-UPSTREAM astropy-pr12006-cfitsio4.patch gh#astropy/astropy#12006
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Patch1: https://github.com/astropy/astropy/pull/12006.patch#/astropy-pr12006-cfitsio4.patch
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BuildRequires: %{python_module Cython >= 0.29.22}
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BuildRequires: %{python_module Jinja2}
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BuildRequires: %{python_module devel >= 3.7}
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BuildRequires: %{python_module extension-helpers}
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BuildRequires: %{python_module numpy-devel >= 1.17}
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BuildRequires: %{python_module pyerfa >= 1.7.3}
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BuildRequires: %{python_module setuptools_scm}
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BuildRequires: %{python_module setuptools}
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BuildRequires: fdupes
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BuildRequires: hdf5-devel
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BuildRequires: pkgconfig
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BuildRequires: python-rpm-macros
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Requires: python-dbm
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Requires: python-numpy >= 1.17
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Requires: python-pyerfa >= 1.7.3
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Requires(post): update-alternatives
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Requires(postun):update-alternatives
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Recommends: libxml2-tools
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Recommends: python-Bottleneck
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Recommends: python-PyYAML >= 3.13
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Recommends: python-asdf >= 2.6
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Recommends: python-beautifulsoup4
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Recommends: python-bleach
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Recommends: python-h5py
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Recommends: python-html5lib
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Recommends: python-jplephem
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Recommends: python-matplotlib >= 3
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Recommends: python-mpmath
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Recommends: python-pandas
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Recommends: python-scipy >= 1.1
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Recommends: python-setuptools
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Recommends: python-sortedcontainers
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Conflicts: perl-Data-ShowTable
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%if %{with system_cfitsio}
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BuildRequires: pkgconfig(cfitsio)
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%endif
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%if %{with system_expat}
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BuildRequires: pkgconfig(expat)
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%endif
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%if %{with system_wcslib}
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BuildRequires: pkgconfig(wcslib) >= 7
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%endif
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%if %{with test}
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# SECTION Optional requirements
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BuildRequires: %{python_module Bottleneck}
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BuildRequires: %{python_module PyYAML >= 3.13}
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BuildRequires: %{python_module asdf >= 2.6}
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BuildRequires: %{python_module beautifulsoup4}
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BuildRequires: %{python_module bleach}
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BuildRequires: %{python_module h5py}
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BuildRequires: %{python_module html5lib}
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BuildRequires: %{python_module jplephem}
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BuildRequires: %{python_module matplotlib >= 3}
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BuildRequires: %{python_module mpmath}
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BuildRequires: %{python_module pandas}
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BuildRequires: %{python_module scipy >= 1.1}
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BuildRequires: %{python_module sortedcontainers}
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BuildRequires: libxml2-tools
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# /SECTION
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# SECTION test requirements
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# We need the compiled package for testing
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BuildRequires: %{python_module astropy = %{version}}
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BuildRequires: %{python_module ipython >= 4.2}
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BuildRequires: %{python_module objgraph}
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BuildRequires: %{python_module packaging}
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BuildRequires: %{python_module pytest-astropy}
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BuildRequires: %{python_module pytest-mpl}
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BuildRequires: %{python_module pytest-xdist}
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BuildRequires: %{python_module sgp4}
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BuildRequires: %{python_module skyfield}
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# /SECTION
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%endif
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%python_subpackages
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%description
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Astropy is a package intended to contain core functionality and some
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common tools needed for performing astronomy and astrophysics research with
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Python. It also provides an index for other astronomy packages and tools for
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managing them.
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%if !%{with test}
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%prep
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%autosetup -p1 -n astropy-%{version}
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# Make sure bundled libs are not used
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%if %{with system_cfitsio}
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rm -rf cextern/cfitsio
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%endif
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%if %{with system_expat}
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rm -rf cextern/expat
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rm licenses/EXPAT_LICENSE.rst
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%endif
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%if %{with system_wcslib}
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rm -rf cextern/wcslib
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rm licenses/WCSLIB_LICENSE.rst
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%endif
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# Disable test failure on DeprecationWarnings
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sed -i "/enable_deprecations_as_exceptions(/,/)/ d" astropy/conftest.py
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# increase test deadline for slow obs executions (e.g. on s390x)
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echo "
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import hypothesis
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hypothesis.settings.register_profile('obs', deadline=5000)
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" >> astropy/conftest.py
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%build
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%{?unbundle_libs}
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%python_build
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%install
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%{?unbundle_libs}
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%python_install
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for b in %{binaries}; do
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%python_clone -a %{buildroot}%{_bindir}/$b
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done
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%python_expand %fdupes %{buildroot}%{$python_sitearch}
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%endif
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%if %{with test}
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%check
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%ifarch aarch64
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# doctest failure because of precision errors
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donttest+=" or bayesian_info_criterion_lsq"
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%endif
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%ifarch %arm32
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# gh#astropy/astropy#12017
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donttest+=" or test_stats"
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%endif
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testselect_expr="${donttest:+-k \"not (${donttest# or })\"}"
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# http://docs.astropy.org/en/latest/development/testguide.html#running-tests
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# running pytest directly would require building the extensions inplace
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%{python_exec -B -c "
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import sys, astropy
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pytestargs = ('-v '
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'-n auto ' # pytest-xdist
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'-p no:cacheprovider '
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'--hypothesis-profile=obs '
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'$testselect_expr')
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returncode = astropy.test(args=pytestargs)
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sys.exit(returncode)
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"}
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%endif
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%if !%{with test}
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%post
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%{expand:%(for b in %{binaries}; do echo "%%python_install_alternative $b"; done)}
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%postun
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%{expand:%(for b in %{binaries}; do echo "%%python_uninstall_alternative $b"; done)}
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%files %{python_files}
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%doc CHANGES.rst README.rst
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%license LICENSE.rst licenses/*
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%{expand:%(for b in %{binaries}; do echo "%%python_alternative %%{_bindir}/$b"; done)}
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%{python_sitearch}/astropy/
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%{python_sitearch}/astropy-%{version}*-info
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%endif
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%changelog
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