forked from pool/python-biopython
90 lines
2.8 KiB
RPMSpec
90 lines
2.8 KiB
RPMSpec
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#
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# spec file for package python-biopython
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#
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# Copyright (c) 2018 SUSE LINUX GmbH, Nuernberg, Germany.
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via http://bugs.opensuse.org/
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#
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# Tests require a network connection
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%bcond_with test
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%{?!python_module:%define python_module() python-%{**} python3-%{**}}
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Name: python-biopython
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Version: 1.71
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Release: 0
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Summary: Python Tools for Computational Molecular Biology
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License: MIT
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Group: Development/Libraries/Python
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Url: http://www.biopython.org
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Source: https://files.pythonhosted.org/packages/source/b/biopython/biopython-%{version}.tar.gz
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BuildRequires: flex
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BuildRequires: fdupes
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BuildRequires: python-rpm-macros
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BuildRequires: python3-2to3
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BuildRequires: %{python_module devel}
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BuildRequires: %{python_module setuptools}
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BuildRequires: %{python_module numpy-devel}
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BuildRequires: %{python_module xml}
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Requires: python-numpy
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Requires: python-xml
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Recommends: python-matplotlib
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Recommends: python-mysql
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Recommends: python-networkx
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Recommends: python-psycopg2
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Recommends: python-pydot
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Recommends: python-pygraphviz
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Recommends: python-rdflib
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Recommends: python-reportlab
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BuildRoot: %{_tmppath}/%{name}-%{version}-build
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%python_subpackages
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%description
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The Biopython Project is an international association of developers of freely
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available Python tools for computational molecular biology.
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%prep
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%setup -n biopython-%{version}
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# remove all execute bits from documentation and fix line endings
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find -type f -exec chmod -x {} 2>/dev/null ';'
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find -type f -exec sed -i 's/\r//' {} 2>/dev/null ';'
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# remove she-bang lines in .py files to keep rpmlint happy
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find -type f -name "*.py" -exec sed -i '/^#![ ]*\/usr\/bin\/.*$/ d' {} 2>/dev/null ';'
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sed -i '/^#![ ]*\/usr\/bin\/.*$/ d' Scripts/Structure/hsexpo
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%build
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export LANG=en_US.UTF-8
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%python_build
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%install
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export LANG=en_US.UTF-8
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%python_install
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%python_expand %fdupes %{buildroot}%{$python_sitelib}
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%if %{with test}
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%check
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export LANG=en_US.UTF-8
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%python_exec setup.py test
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%endif
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%files %{python_files}
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%defattr(-,root,root)
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%doc CONTRIB.rst DEPRECATED.rst NEWS.rst README.rst
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%doc Doc/
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%license LICENSE.rst
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%{python_sitearch}/Bio/
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%{python_sitearch}/BioSQL/
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%{python_sitearch}/biopython-%{version}-py*.egg-info
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%changelog
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