Accepting request 605802 from devel:languages:python

computational molecular biology for python

OBS-URL: https://build.opensuse.org/request/show/605802
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-biopython?expand=0&rev=1

python-biopython.spec

@@ -0,0 +1,89 @@
+#
+# spec file for package python-biopython
+#
+# Copyright (c) 2018 SUSE LINUX GmbH, Nuernberg, Germany.
+#
+# All modifications and additions to the file contributed by third parties
+# remain the property of their copyright owners, unless otherwise agreed
+# upon. The license for this file, and modifications and additions to the
+# file, is the same license as for the pristine package itself (unless the
+# license for the pristine package is not an Open Source License, in which
+# case the license is the MIT License). An "Open Source License" is a
+# license that conforms to the Open Source Definition (Version 1.9)
+# published by the Open Source Initiative.
+
+# Please submit bugfixes or comments via http://bugs.opensuse.org/
+#
+
+
+# Tests require a network connection
+%bcond_with test
+
+%{?!python_module:%define python_module() python-%{**} python3-%{**}}
+Name:           python-biopython
+Version:        1.71
+Release:        0
+Summary:        Python Tools for Computational Molecular Biology
+License:        MIT
+Group:          Development/Libraries/Python
+Url:            http://www.biopython.org
+Source:         https://files.pythonhosted.org/packages/source/b/biopython/biopython-%{version}.tar.gz
+BuildRequires:  flex
+BuildRequires:  fdupes
+BuildRequires:  python-rpm-macros
+BuildRequires:  python3-2to3
+BuildRequires:  %{python_module devel}
+BuildRequires:  %{python_module setuptools}
+BuildRequires:  %{python_module numpy-devel}
+BuildRequires:  %{python_module xml}
+Requires:       python-numpy
+Requires:       python-xml
+Recommends:     python-matplotlib
+Recommends:     python-mysql
+Recommends:     python-networkx
+Recommends:     python-psycopg2
+Recommends:     python-pydot
+Recommends:     python-pygraphviz
+Recommends:     python-rdflib
+Recommends:     python-reportlab
+BuildRoot:      %{_tmppath}/%{name}-%{version}-build
+%python_subpackages
+
+%description
+The Biopython Project is an international association of developers of freely
+available Python tools for computational molecular biology.
+
+%prep
+%setup -n biopython-%{version}
+# remove all execute bits from documentation and fix line endings
+find -type f -exec chmod -x {} 2>/dev/null ';'
+find -type f -exec sed -i 's/\r//' {} 2>/dev/null ';'
+# remove she-bang lines in .py files to keep rpmlint happy
+find -type f -name "*.py" -exec sed -i '/^#![ ]*\/usr\/bin\/.*$/ d' {} 2>/dev/null ';'
+sed -i '/^#![ ]*\/usr\/bin\/.*$/ d' Scripts/Structure/hsexpo
+
+%build
+export LANG=en_US.UTF-8
+%python_build
+
+%install
+export LANG=en_US.UTF-8
+%python_install
+%python_expand %fdupes %{buildroot}%{$python_sitelib}
+
+%if %{with test}
+%check
+export LANG=en_US.UTF-8
+%python_exec setup.py test
+%endif
+
+%files %{python_files}
+%defattr(-,root,root)
+%doc CONTRIB.rst DEPRECATED.rst NEWS.rst README.rst
+%doc Doc/
+%license LICENSE.rst
+%{python_sitearch}/Bio/
+%{python_sitearch}/BioSQL/
+%{python_sitearch}/biopython-%{version}-py*.egg-info
+
+%changelog