diff --git a/biopython-1.77.tar.gz b/biopython-1.77.tar.gz deleted file mode 100644 index 263b264..0000000 --- a/biopython-1.77.tar.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:fb1936e9ca9e7af8de1050e84375f23328e04b801063edf0ad73733494d8ec42 -size 16837021 diff --git a/biopython-1.78.tar.gz b/biopython-1.78.tar.gz new file mode 100644 index 0000000..e358ea7 --- /dev/null +++ b/biopython-1.78.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1ee0a0b6c2376680fea6642d5080baa419fd73df104a62d58a8baf7a8bbe4564 +size 16895184 diff --git a/python-biopython.changes b/python-biopython.changes index 57d9f15..08d1e66 100644 --- a/python-biopython.changes +++ b/python-biopython.changes @@ -1,3 +1,25 @@ +------------------------------------------------------------------- +Sat Feb 20 19:29:23 UTC 2021 - andy great + +- Update to version 1.7.8. + * The main change is that Bio.Alphabet is no longer used. In some + cases you will now have to specify expected letters, molecule + type (DNA, RNA, protein), or gap character explicitly. + * Bio.SeqIO.parse() is faster with "fastq" format due to small + improvements in the Bio.SeqIO.QualityIO module. + * The SeqFeature object's .extract() method can now be used for + trans-spliced locations via an optional dictionary of references. + * As in recent releases, more of our code is now explicitly + available under either our original "Biopython License Agreement", + or the very similar but more commonly used "3-Clause BSD License". + See the LICENSE.rst file for more details. + * Additionally, a number of small bugs and typos have been fixed + with additions to the test suite. There has been further work to + follow the Python PEP8, PEP257 and best practice standard coding + style, and all of the tests have been reformatted with the black + tool to match the main code base. +- Skip python36 because numpy no longer support it. + ------------------------------------------------------------------- Tue Nov 3 15:58:16 UTC 2020 - Matej Cepl diff --git a/python-biopython.spec b/python-biopython.spec index 94e8eaf..59f89a4 100644 --- a/python-biopython.spec +++ b/python-biopython.spec @@ -1,7 +1,7 @@ # # spec file for package python-biopython # -# Copyright (c) 2020 SUSE LLC +# Copyright (c) 2021 SUSE LLC # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed @@ -20,8 +20,9 @@ # Tests require a network connection %bcond_with test %define skip_python2 1 +%define skip_python36 1 Name: python-biopython -Version: 1.77 +Version: 1.78 Release: 0 Summary: Python Tools for Computational Molecular Biology License: MIT AND BSD-3-Clause @@ -54,7 +55,6 @@ available Python tools for computational molecular biology. %prep %setup -q -n biopython-%{version} find -type f -name "*.py" -exec sed -i '/^#![ ]*\/usr\/bin\/.*$/ d' {} 2>/dev/null ';' -sed -i '/^#![ ]*\/usr\/bin\/.*$/ d' Scripts/Structure/hsexpo # Example scripts cannot be in a subdirectory mv -v Doc/examples examples