forked from pool/python-lmfit
c391a04316
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-lmfit?expand=0&rev=2
158 lines
7.7 KiB
Plaintext
158 lines
7.7 KiB
Plaintext
-------------------------------------------------------------------
|
|
Tue Jun 16 08:44:01 UTC 2020 - Tomáš Chvátal <tchvatal@suse.com>
|
|
|
|
- Skip two failing tests that are borked on non 64bit intel
|
|
|
|
-------------------------------------------------------------------
|
|
Mon Jun 8 07:06:22 UTC 2020 - John Paul Adrian Glaubitz <adrian.glaubitz@suse.com>
|
|
|
|
- Update to version 1.0.1
|
|
+ New features:
|
|
- added thermal distribution model and lineshape (PR #620; @mpmdean)
|
|
- introduced a new argument ``max_nfev`` to uniformly specify the maximum
|
|
number of function evalutions (PR #610)
|
|
**Please note: all other arguments (e.g., ``maxfev``, ``maxiter``, ...)
|
|
will no longer be passed to the underlying solver. A warning will be emitted
|
|
stating that one should use ``max_nfev``.**
|
|
- the attribute ``call_kws`` was added to the ``MinimizerResult`` class and
|
|
contains the keyword arguments that are supplied to the solver in SciPy.
|
|
+ Bug fixes:
|
|
- fixes to the ``load`` and ``__setstate__`` methods of the Parameter class
|
|
- fixed failure of ModelResult.dump() due to missing attributes
|
|
(Issue #611, PR #623; @mpmdean)
|
|
- ``guess_from_peak`` function now also works correctly with decreasing
|
|
x-values or when using pandas (PRs #627 and #629; @mpmdean)
|
|
- the ``Parameter.set()`` method now correctly first updates the boundaries
|
|
and then the value (Issue #636, PR #637; @arunpersaud)
|
|
+ Various:
|
|
- fixed typo for the use of expressions in the documentation
|
|
(Issue #610; @jkrogager)
|
|
- removal of PY2-compatibility and unused code and improved test
|
|
coverage (PRs #619, #631, and #633)
|
|
- removed deprecated ``isParameter`` function and automatic conversion of
|
|
an ``uncertainties`` object (PR #626)
|
|
- inaccurate FWHM calculations were removed from built-in models, others
|
|
labeled as estimates (Issue #616 and PR #630)
|
|
- corrected spelling mistake for the Doniach lineshape and model
|
|
(Issue #634; @rayosborn)
|
|
- removed unsupported/untested code for IPython notebooks in lmfit/ui/*
|
|
- from version 1.0.0
|
|
+ New features:
|
|
- no new features are introduced in 1.0.0.
|
|
+ Improvements:
|
|
- support for Python 2 and use of the ``six`` package are removed. (PR #612)
|
|
+ Various:
|
|
- documentation updates to clarify the use of ``emcee``. (PR #614)
|
|
- from version 0.9.15
|
|
+ New features, improvements, and bug fixes:
|
|
- move application of parameter bounds to setter instead of getter (PR #587)
|
|
- add support for non-array Jacobian types in least_squares
|
|
(Issue #588, @ezwelty in PR #589)
|
|
- add more information (i.e., acor and acceptance_fraction) about
|
|
emcee fit (@j-zimmermann in PR #593)
|
|
- "name" is now a required positional argument for Parameter class,
|
|
update the magic methods (PR #595)
|
|
- fix nvars count and bound handling in confidence interval
|
|
calculations (Issue #597, PR #598)
|
|
- support Python 3.8; requires asteval >= 0.9.16 (PR #599)
|
|
- only support emcee version 3 (i.e., no PTSampler anymore) (PR #600)
|
|
- fix and refactor prob_bunc in confidence interval calculations (PR #604)
|
|
- fix adding Parameters with custom user-defined symbols
|
|
(Issue #607, PR #608; thanks to @gbouvignies for the report)
|
|
+ Various:
|
|
- bump requirements to LTS version of SciPy/ NumPy and code clean-up (PR #591)
|
|
- documentation updates (PR #596, and others)
|
|
- improve test coverage and Travis CI updates (PR #595, and others)
|
|
- update pre-commit hooks and configuration in setup.cfg
|
|
+ To-be deprecated:
|
|
- function Parameter.isParameter and conversion from
|
|
uncertainties.core.Variable to value in _getval (PR #595)
|
|
- from version 0.9.14
|
|
+ New features:
|
|
- the global optimizers ``shgo`` and ``dual_annealing`` (new in SciPy v1.2)
|
|
are now supported (Issue #527; PRs #545 and #556)
|
|
- ``eval`` method added to the Parameter class (PR #550 by @zobristnicholas)
|
|
- avoid ZeroDivisionError in ``printfuncs.params_html_table``
|
|
(PR #552 by @aaristov and PR #559)
|
|
- add parallelization to ``brute`` method (PR #564, requires SciPy v1.3)
|
|
+ Bug fixes:
|
|
- consider only varying parameters when reporting potential issues with calculating
|
|
errorbars (PR #549) and compare ``value`` to both ``min`` and ``max`` (PR #571)
|
|
- guard against division by zero in lineshape functions and ``FWHM``
|
|
and ``height`` expression calculations (PR #545)
|
|
- fix issues with restoring a saved Model (Issue #553; PR #554)
|
|
- always set ``result.method`` for ``emcee`` algorithm (PR #558)
|
|
- more careful adding of parameters to handle out-of-order
|
|
constraint expressions (Issue #560; PR #561)
|
|
- make sure all parameters in Model.guess() use prefixes (PRs #567 and #569)
|
|
- use ``inspect.signature`` for PY3 to support wrapped functions
|
|
(Issue #570; PR #576)
|
|
- fix ``result.nfev``` for ``brute`` method when using parallelization
|
|
(Issue #578; PR #579)
|
|
+ Various:
|
|
- remove "missing" in the Model class (replaced by nan_policy) and "drop"
|
|
as option to nan_policy (replaced by omit) deprecated since 0.9 (PR #565).
|
|
- deprecate 'report_errors' in printfuncs.py (PR #571)
|
|
- updates to the documentation to use ``jupyter-sphinx`` to include
|
|
examples/output (PRs #573 and #575)
|
|
- include a Gallery with examples in the documentation
|
|
using ``sphinx-gallery`` (PR #574 and #583)
|
|
- improve test-coverage (PRs #571, #572 and #585)
|
|
- add/clarify warning messages when NaN values are detected (PR #586)
|
|
- several updates to docstrings (Issue #584; PR #583, and others)
|
|
- update pre-commit hooks and several docstrings
|
|
- Update BuildRequires and Requires from setup.py
|
|
|
|
-------------------------------------------------------------------
|
|
Wed Apr 24 08:42:15 UTC 2019 - pgajdos@suse.com
|
|
|
|
- version update to 0.9.13
|
|
New features:
|
|
Clearer warning message in fit reports when uncertainties should
|
|
but cannot be estimated, including guesses of which Parameters
|
|
to examine (#521, #543)
|
|
SplitLorenztianModel and split_lorentzian function (#523)
|
|
HTML representations for Parameter, MinimizerResult, and Model
|
|
so that they can be printed better with Jupyter (#524, #548)
|
|
support parallelization for differential evolution (#526)
|
|
Bug fixes:
|
|
delay import of matplotlib (and so, the selection of its backend)
|
|
as late as possible (#528, #529)
|
|
fix for saving, loading, and reloading ModelResults (#534)
|
|
fix to leastsq to report the best-fit values, not the values tried
|
|
last (#535, #536)
|
|
fix synchronization of all parameter values on Model.guess() (#539, #542)
|
|
improve deprecation warnings for outdated nan_policy keywords (#540)
|
|
fix for edge case in gformat() (#547)
|
|
Project managements:
|
|
using pre-commit framework to improve and enforce coding style (#533)
|
|
added code coverage report to github main page
|
|
updated docs, github templates, added several tests.
|
|
dropped support and testing for Python 3.4.
|
|
- deleted patches
|
|
- lmfit-scipy.patch (upstreamed)
|
|
|
|
-------------------------------------------------------------------
|
|
Tue Mar 5 14:57:02 UTC 2019 - Todd R <toddrme2178@gmail.com>
|
|
|
|
- Fix spurious unit test errors.
|
|
|
|
-------------------------------------------------------------------
|
|
Fri Jan 18 10:24:44 UTC 2019 - Tomáš Chvátal <tchvatal@suse.com>
|
|
|
|
- Apply patch to fix build with new scipy:
|
|
* lmfit-scipy.patch
|
|
|
|
-------------------------------------------------------------------
|
|
Fri Jan 18 10:19:27 UTC 2019 - Tomáš Chvátal <tchvatal@suse.com>
|
|
|
|
- Update to 0.9.12:
|
|
* make exceptions explicit
|
|
* use inspect.getfullargspec for Python3
|
|
* test-suite: use pytest features, improve coverage, fix mistakes
|
|
|
|
-------------------------------------------------------------------
|
|
Thu Mar 22 04:46:08 UTC 2018 - toddrme2178@gmail.com
|
|
|
|
- Initial version
|