forked from pool/python-nibabel
7fb68bda45
- Add patch support-numpy-2.patch: * Use np.asarray() to support NumPy 2 as well. OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-nibabel?expand=0&rev=26
108 lines
3.9 KiB
RPMSpec
108 lines
3.9 KiB
RPMSpec
#
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# spec file for package python-nibabel
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#
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# Copyright (c) 2024 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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%define binaries nib-conform nib-convert nib-dicomfs nib-diff nib-ls nib-nifti-dx nib-roi nib-stats nib-tck2trk nib-trk2tck parrec2nii
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Name: python-nibabel
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Version: 5.2.1
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Release: 0
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Summary: Tool to access multiple neuroimaging data formats
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License: MIT
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URL: https://nipy.org/nibabel
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# SourceRepository: https://github.com/nipy/nibabel
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Source: https://files.pythonhosted.org/packages/source/n/nibabel/nibabel-%{version}.tar.gz
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# PATCH-FIX-UPSTREAM gh#nipy/nibabel#1325
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Patch0: support-pytest-8.patch
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# PATCH-FIX-UPSTREAM gh#nipy/nibabel#1304
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Patch1: support-numpy-2.patch
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BuildRequires: %{python_module base >= 3.8}
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BuildRequires: %{python_module hatch-vcs}
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BuildRequires: %{python_module hatchling}
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BuildRequires: %{python_module pip}
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BuildRequires: fdupes
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BuildRequires: python-rpm-macros
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Requires: python-numpy >= 1.20
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Requires: python-packaging => 17
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Requires: (python-importlib-resources >= 1.3 if python-base < 3.9)
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Requires(post): update-alternatives
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Requires(postun): update-alternatives
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Recommends: python-Pillow
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Recommends: python-h5py
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Recommends: python-pydicom >= 1
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Recommends: python-scipy
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BuildArch: noarch
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# SECTION test requirements
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BuildRequires: %{python_module Pillow}
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BuildRequires: %{python_module h5py}
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BuildRequires: %{python_module importlib-resources >= 1.3 if %python-base < 3.9}
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BuildRequires: %{python_module numpy >= 1.20}
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BuildRequires: %{python_module packaging >= 17}
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BuildRequires: %{python_module pydicom >= 1}
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BuildRequires: %{python_module pytest-doctestplus}
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BuildRequires: %{python_module pytest-httpserver}
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BuildRequires: %{python_module pytest-xdist}
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BuildRequires: %{python_module pytest}
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BuildRequires: %{python_module scipy}
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BuildRequires: %{pythons}
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BuildRequires: git-core
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# /SECTION
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%python_subpackages
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%description
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This package provides read +/- write access to some common medical and
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neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and
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later), GIFTI, NIfTI1, NIfTI2, CIFTI-2, MINC1, MINC2, AFNI BRIK/HEAD,
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MGH and ECAT as well as Philips PAR/REC. We can read and write
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FreeSurfer geometry, annotation and morphometry files. There is some
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very limited support for DICOM.
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%prep
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%autosetup -p1 -n nibabel-%{version}
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find nibabel -name .gitignore -delete
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sed -i '1{/^!#/d}' nibabel/cmdline/*.py
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chmod a-x nibabel/cmdline/*.py
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chmod a-x nibabel/tests/data/umass_anonymized.PAR nibabel/gifti/tests/data/gzipbase64.gii nibabel/nicom/dicomwrappers.py nibabel/nicom/tests/test_dicomwrappers.py
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%build
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%pyproject_wheel
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%install
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%pyproject_install
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for b in %{binaries}; do
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%python_clone -a %{buildroot}%{_bindir}/$b
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done
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%python_expand %fdupes %{buildroot}%{$python_sitelib}
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%check
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%pytest -n auto -rsfE
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%post
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%{expand:%(for b in %{binaries}; do echo "%%python_install_alternative $b"; done)}
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%postun
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%{expand:%(for b in %{binaries}; do echo "%%python_uninstall_alternative $b"; done)}
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%files %{python_files}
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%doc AUTHOR Changelog README.rst
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%license COPYING
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%{expand:%(for b in %{binaries}; do echo "%%python_alternative %%{_bindir}/$b"; done)}
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%{python_sitelib}/nibabel
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%{python_sitelib}/nisext
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%{python_sitelib}/nibabel-%{version}.dist-info
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%changelog
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