forked from pool/python-nibabel
Markéta Machová
f07c266728
- Update to 4.0.2
* many changes, see Changelog
* nib-convert CLI tool to make image type and data dtype conversion
accessible via the command line.
* Allow dtypes to be passed to Analyze-like images at __init__()
and to_filename()
* Allow compressed GIFTI images
* Add zstd compression support
* Test on Python 3.10
* Passing (u)int64 arrays to Nifti1Image and subclasses will warn
unless a header or dtype option is passed; in the future this will
become an error. Additionally, passing int or 'int' to set_data_dtype()
now raises an error, requiring an explicit numpy dtype to make 64-bit
integer images.
* Drop support for Python 3.6, Numpy < 1.17
* Fully removed the APIs, which have raised errors on use since 3.0
- Drop upstreamed 983.patch and purge-nose.patch
OBS-URL: https://build.opensuse.org/request/show/1008422
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-nibabel?expand=0&rev=17
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-------------------------------------------------------------------
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Thu Oct 6 14:07:18 UTC 2022 - Markéta Machová <mmachova@suse.com>
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- Update to 4.0.2
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* many changes, see Changelog
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* nib-convert CLI tool to make image type and data dtype conversion
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accessible via the command line.
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* Allow dtypes to be passed to Analyze-like images at __init__()
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and to_filename()
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* Allow compressed GIFTI images
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* Add zstd compression support
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* Test on Python 3.10
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* Passing (u)int64 arrays to Nifti1Image and subclasses will warn
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unless a header or dtype option is passed; in the future this will
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become an error. Additionally, passing int or 'int' to set_data_dtype()
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now raises an error, requiring an explicit numpy dtype to make 64-bit
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integer images.
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* Drop support for Python 3.6, Numpy < 1.17
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* Fully removed the APIs, which have raised errors on use since 3.0
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- Drop upstreamed 983.patch and purge-nose.patch
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-------------------------------------------------------------------
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Wed Mar 31 09:09:56 UTC 2021 - Guillaume GARDET <guillaume.gardet@opensuse.org>
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- Add upstream patch to fix test on Backports:SLE-15-SP3:
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* 983.patch
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-------------------------------------------------------------------
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Fri Feb 12 14:37:36 UTC 2021 - Dirk Müller <dmueller@suse.com>
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- skip python 36
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-------------------------------------------------------------------
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Fri Jul 10 09:06:52 UTC 2020 - Marketa Calabkova <mcalabkova@suse.com>
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- Update to 3.1.1
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* Conformation function (``processing.conform``) and CLI tool
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(``nib-conform``) to apply shape, orientation and zooms (pr/853) (Jakub
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Kaczmarzyk, reviewed by CM, YOH)
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* Affine rescaling function (``affines.rescale_affine``) to update
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dimensions and voxel sizes (pr/853) (CM, reviewed by Jakub Kaczmarzyk)
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* ``kw_only_meth``/``kw_only_func`` decorators are deprecated (pr/848)
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(RM, reviewed by CM)
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- Add patch purge-nose.patch
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-------------------------------------------------------------------
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Thu May 21 10:56:36 UTC 2020 - Petr Gajdos <pgajdos@suse.com>
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- %python3_only -> %python_alternative
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-------------------------------------------------------------------
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Fri Mar 6 08:07:25 UTC 2020 - Tomáš Chvátal <tchvatal@suse.com>
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- Update to 3.0.1:
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* Test failed by using array method on tuple. (pr/860) (Ben Darwin, reviewed by CM)
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* Validate ExpiredDeprecationErrors, promoted by 3.0 release from DeprecationWarnings. (pr/857) (CM)
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* Improve testing of data scaling in ArrayProxy API (pr/847) (CM, reviewed by Alejandro de la Vega)
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* Document SpatialImage.slicer interface (pr/846) (CM)
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* get_fdata(dtype=np.float32) will attempt to avoid casting data to np.float64 when scaling parameters would otherwise promote the data type unnecessarily. (pr/833) (CM, reviewed by Ross Markello)
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* ArraySequence now supports a large set of Python operators to combine or update in-place. (pr/811) (MC, reviewed by Serge Koudoro, Philippe Poulin, CM, MB)
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* Warn, rather than fail, on DICOMs with unreadable Siemens CSA tags (pr/818) (Henry Braun, reviewed by CM)
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* Improve clarity of coordinate system tutorial (pr/823) (Egor Panfilov, reviewed by MB)
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-------------------------------------------------------------------
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Tue Nov 19 20:41:07 UTC 2019 - Todd R <toddrme2178@gmail.com>
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- Update to version 2.5.1
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+ Enhancements
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* Ignore endianness in ``nib-diff`` if values match
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+ Bug fixes
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* Correctly handle Philips DICOMs w/ derived volume
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* Raise CSA tag limit to 1000, parametrize for future relaxing
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* Coerce data types to match NIfTI intent codes when writing GIFTI data
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arrays
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+ Maintenance
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* Require h5py 2.10 for Windows + Python < 3.6 to resolve unexpected dtypes
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in Minc2 data
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+ API changes and deprecations
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* Deprecate ``nicom.dicomwrappers.Wrapper.get_affine()`` in favor of ``affine``
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property; final removal in nibabel 4.0
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- Update to version 2.5.0
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+ Enhancements
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* Add SerializableImage class with to/from_bytes methods
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* Check CIFTI-2 data shape matches shape described by header
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+ Bug fixes
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* Handle stricter numpy casting rules in tests
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* TRK header fields flipped in files written on big-endian systems
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* Load multiframe ECAT images with Python 3
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+ Maintenance
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* Fix CodeCov paths on Appveyor for more accurate coverage
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* Move to setuptools and reduce use ``nisext`` functions
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* Better handle test setup/teardown
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+ API changes and deprecations
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* Effect threatened warnings and set some deprecation timelines
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* Trackvis methods now default to v2 formats
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* ``nibabel.trackvis`` scheduled for removal in nibabel 4.0
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* ``nibabel.minc`` and ``nibabel.MincImage`` will be removed in nibabel 3.0
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- Drop upstream-included fix_numpy_1_17.patch
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-------------------------------------------------------------------
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Mon Jul 29 18:56:10 UTC 2019 - Todd R <toddrme2178@gmail.com>
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- Add fix_numpy_1_17.patch to fix building with numpy 1.17.0
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From: gh#/nipy/nibabel#768
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-------------------------------------------------------------------
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Fri Jul 26 14:21:33 UTC 2019 - Todd R <toddrme2178@gmail.com>
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- Initial version
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