forked from pool/python-numpy
- Update to 2.0.0, changes include:
* Adds support for array parameter declaration in fortran... * Added ``bitwise_count`` UFuncs * Add binding for random pyx files * Use AVX512-FP16 SVML content for float16 umath functions * allow int sequences as shape arguments in numpy.memmap * Add .mT attribute for arrays * Create complex scalars from real and imaginary parts * add copy parameter for api.reshape function * make use of locals() in a comprehension fully compatible... * Add array API standard v2022.12 support to numpy.array_api * Change string to bool conversions to be consistent with... * Allow np.info on non-hashable objects with a dtype * let zeros, empty, and empty_like accept dtype classes * Bump C-ABI to 2 but accept older NumPy if compiled against... * Use high accuracy SVML for double precision umath functions * expose PyUFunc_GiveFloatingpointErrors in the dtype API * PyObject_IsTrue and PyObject_Not error handling in setflags * array2string does not add signs for positive integers. * Vectorize np.partition and np.argpartition using AVX-512 * Create helper for conversion to arrays * Add size check for threaded array assignment * Finalize ``fastCopyAndTranpose`` and other old C-funcs/members... * assert_array_less should report max violations instead of... * Introduce tracer for enabled CPU targets on each optimized... * Extend np.add ufunc to work with unicode and byte dtypes * Add find/rfind ufuncs for unicode and byte dtypes * Make ``intp`` ``ssize_t`` and introduce characters nN * Add isdigit/isspace/isdecimal/isnumeric ufuncs for string... * DType API slot for descriptor finalization before array... OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-numpy?expand=0&rev=161
This commit is contained in:
Git OBS Bridge
451
python-numpy.spec
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451
python-numpy.spec
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@@ -0,0 +1,451 @@
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#
|
||||
# spec file for package python-numpy
|
||||
#
|
||||
# Copyright (c) 2024 SUSE LLC
|
||||
#
|
||||
# All modifications and additions to the file contributed by third parties
|
||||
# remain the property of their copyright owners, unless otherwise agreed
|
||||
# upon. The license for this file, and modifications and additions to the
|
||||
# file, is the same license as for the pristine package itself (unless the
|
||||
# license for the pristine package is not an Open Source License, in which
|
||||
# case the license is the MIT License). An "Open Source License" is a
|
||||
# license that conforms to the Open Source Definition (Version 1.9)
|
||||
# published by the Open Source Initiative.
|
||||
|
||||
# Please submit bugfixes or comments via https://bugs.opensuse.org/
|
||||
#
|
||||
|
||||
|
||||
%global flavor @BUILD_FLAVOR@%{nil}
|
||||
%define ver 2.0.0
|
||||
%define _ver 2_0_0
|
||||
%define pname python-numpy
|
||||
%define plainpython python
|
||||
%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
|
||||
%if "%{flavor}" == ""
|
||||
%bcond_with hpc
|
||||
%bcond_with openblas
|
||||
%endif
|
||||
%if "%{flavor}" == "gnu-hpc"
|
||||
%bcond_without hpc
|
||||
%endif
|
||||
%if "%{flavor}" == "gnu7-hpc"
|
||||
%define c_f_ver 7
|
||||
%bcond_without hpc
|
||||
%endif
|
||||
%if %{with hpc}
|
||||
%bcond_without openblas
|
||||
%endif
|
||||
%if 0%{?sle_version} == 120300
|
||||
%{?with_openblas:ExclusiveArch: do_not_build}
|
||||
%endif
|
||||
%{?with_hpc:%{hpc_requires}}
|
||||
#
|
||||
%if 0%{?suse_version} > 1500
|
||||
%bcond_without libalternatives
|
||||
%bcond_without cblas
|
||||
%else
|
||||
%bcond_with libalternatives
|
||||
%bcond_with cblas
|
||||
%endif
|
||||
#
|
||||
%bcond_with ringdisabled
|
||||
#
|
||||
%if %{without hpc}
|
||||
%define package_name %{pname}
|
||||
%define p_python_sitearch %{python_sitearch}
|
||||
%define p_prefix %{_prefix}
|
||||
%define p_bindir %{_bindir}
|
||||
%else
|
||||
%{!?compiler_family:%global compiler_family gnu}
|
||||
%{hpc_init -c %{compiler_family} %{?c_f_ver:-v %{c_f_ver}} %{?mpi_ver:-V %{mpi_ver}}}
|
||||
%define package_name %{hpc_package_name %{_ver}}
|
||||
%define p_python_sitearch %{hpc_python_sitearch}
|
||||
%define p_prefix %{hpc_prefix}
|
||||
%define p_bindir %{hpc_bindir}
|
||||
# Magic for OBS Staging. Only build the flavors required by
|
||||
# other packages in the ring.
|
||||
%if %{with ringdisabled}
|
||||
ExclusiveArch: do_not_build
|
||||
%endif
|
||||
%endif
|
||||
%{?sle15_python_module_pythons}
|
||||
Name: %{package_name}
|
||||
# set %%ver and %%_ver instead above
|
||||
Version: %{ver}
|
||||
Release: 0
|
||||
Summary: NumPy array processing for numbers, strings, records and objects
|
||||
License: BSD-3-Clause
|
||||
URL: http://www.numpy.org/
|
||||
Source: https://files.pythonhosted.org/packages/source/n/numpy/numpy-%{version}.tar.gz
|
||||
Source99: python-numpy-rpmlintrc
|
||||
# PATCH-FIX-OPENSUSE numpy-buildfix.patch -- openSUSE-specific build fixes
|
||||
Patch0: numpy-buildfix.patch
|
||||
BuildRequires: %{python_module Cython >= 3.0}
|
||||
BuildRequires: %{python_module base >= 3.9}
|
||||
BuildRequires: %{python_module devel}
|
||||
BuildRequires: %{python_module meson-python >= 0.15 with %python-meson-python < 0.16}
|
||||
BuildRequires: %{python_module pip}
|
||||
BuildRequires: %{python_module pyproject-metadata >= 0.7.1}
|
||||
BuildRequires: cmake
|
||||
%if 0%{?suse_version} <= 1600
|
||||
BuildRequires: gcc12
|
||||
BuildRequires: gcc12-c++
|
||||
%else
|
||||
BuildRequires: gcc
|
||||
BuildRequires: gcc-c++
|
||||
%endif
|
||||
BuildRequires: ninja >= 1.8.2
|
||||
BuildRequires: patchelf
|
||||
BuildRequires: python-rpm-macros >= 20210929
|
||||
BuildConflicts: gcc11 < 11.2
|
||||
%if 0%{?suse_version}
|
||||
BuildRequires: fdupes
|
||||
%endif
|
||||
# SECTION test requirements
|
||||
BuildRequires: %{python_module pytest >= 7.4.0}
|
||||
BuildRequires: %{python_module hypothesis >= 6.75.0}
|
||||
BuildRequires: %{python_module pytest-xdist}
|
||||
BuildRequires: %{python_module testsuite}
|
||||
BuildRequires: %{python_module typing-extensions >= 4.2.0}
|
||||
# /SECTION
|
||||
%if %{without hpc}
|
||||
# Last version which packaged %%{_bindir}/f2py without update-alternatives
|
||||
Conflicts: %{plainpython}-numpy <= 1.12.0
|
||||
%if 0%{?suse_version}
|
||||
BuildRequires: gcc-fortran
|
||||
%else
|
||||
BuildRequires: gcc-gfortran
|
||||
%endif
|
||||
%if %{with openblas}
|
||||
BuildRequires: openblas-devel > 0.3.20
|
||||
%else
|
||||
BuildRequires: blas-devel
|
||||
BuildRequires: lapack-devel
|
||||
%if %{with cblas}
|
||||
# openblas has significantly better performance for some operations
|
||||
BuildRequires: cblas-devel
|
||||
Recommends: libopenblas_pthreads0
|
||||
%endif
|
||||
%endif
|
||||
%if %{with libalternatives}
|
||||
BuildRequires: alts
|
||||
Requires: alts
|
||||
%else
|
||||
Requires(post): update-alternatives
|
||||
Requires(postun): update-alternatives
|
||||
%endif
|
||||
%else
|
||||
BuildRequires: %{compiler_family}%{?c_f_ver}-compilers-hpc-macros-devel
|
||||
BuildRequires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc-devel
|
||||
%ifnarch %ix86 %arm
|
||||
BuildRequires: lua-lmod
|
||||
%endif
|
||||
BuildRequires: suse-hpc
|
||||
Requires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc
|
||||
%endif
|
||||
%python_subpackages
|
||||
|
||||
%description
|
||||
NumPy is a general-purpose array-processing package designed to
|
||||
efficiently manipulate large multi-dimensional arrays of arbitrary
|
||||
records without sacrificing too much speed for small multi-dimensional
|
||||
arrays. NumPy is built on the Numeric code base and adds features
|
||||
introduced by numarray as well as an extended C-API and the ability to
|
||||
create arrays of arbitrary type which also makes NumPy suitable for
|
||||
interfacing with general-purpose data-base applications.
|
||||
|
||||
There are also basic facilities for discrete fourier transform,
|
||||
basic linear algebra and random number generation.
|
||||
|
||||
%{?with_hpc:%{hpc_python_master_package -L -a }}
|
||||
|
||||
%package devel
|
||||
Summary: Development files for numpy applications
|
||||
Requires: %{name} = %{version}
|
||||
Requires: python-devel
|
||||
Requires: %plainpython(abi) = %{python_version}
|
||||
%if %{without hpc}
|
||||
%if %{with openblas}
|
||||
Requires: openblas-devel
|
||||
%else
|
||||
Requires: blas-devel
|
||||
%if %{with cblas}
|
||||
Requires: cblas-devel
|
||||
%endif
|
||||
Requires: lapack-devel
|
||||
%endif
|
||||
%else
|
||||
Requires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc-devel
|
||||
%{hpc_requires_devel}
|
||||
%endif
|
||||
|
||||
%description devel
|
||||
This package contains files for developing applications using numpy.
|
||||
|
||||
%{?with_hpc:%{hpc_python_master_package devel -a }}
|
||||
|
||||
%prep
|
||||
%autosetup -p1 -n numpy-%{version}
|
||||
# Fix non-executable scripts
|
||||
sed -i '1{/^#!/d}'\
|
||||
numpy/distutils/{conv_template,cpuinfo,from_template,system_info}.py \
|
||||
numpy/f2py/{__init__,cfuncs,diagnose,crackfortran,f2py2e,rules}.py \
|
||||
numpy/random/_examples/cython/extending{,_distributions}.pyx \
|
||||
numpy/testing/print_coercion_tables.py
|
||||
chmod -x \
|
||||
numpy/f2py/{crackfortran,f2py2e,rules}.py \
|
||||
numpy/testing/print_coercion_tables.py
|
||||
|
||||
# force cythonization
|
||||
rm -f PKG-INFO
|
||||
|
||||
%build
|
||||
%define _lto_cflags %{nil}
|
||||
%if %{with hpc}
|
||||
%hpc_setup
|
||||
module load openblas
|
||||
export CFLAGS="$(pkg-config --cflags openblas) %{optflags} -fno-strict-aliasing" LIBS="$(pkg-config --libs openblas)"
|
||||
cat > site.cfg <<EOF
|
||||
[openblas]
|
||||
libraries = openblas
|
||||
library_dirs = $OPENBLAS_LIB
|
||||
include_dirs = $OPENBLAS_INC
|
||||
EOF
|
||||
%else
|
||||
export CFLAGS="%{optflags} -fno-strict-aliasing"
|
||||
%endif
|
||||
%if 0%{?suse_version} <= 1600
|
||||
export CC=gcc-12
|
||||
export CXX=g++-12
|
||||
%endif
|
||||
|
||||
%pyproject_wheel
|
||||
|
||||
%install
|
||||
%{?with_hpc:%hpc_setup}
|
||||
%{?with_hpc:module load openblas}
|
||||
|
||||
%pyproject_install --prefix %{p_prefix} --root %{buildroot}
|
||||
|
||||
%if !%{with hpc}
|
||||
%python_clone -a %{buildroot}%{_bindir}/f2py
|
||||
%python_clone -a %{buildroot}%{_bindir}/numpy-config
|
||||
%endif
|
||||
|
||||
%if 0%{?suse_version}
|
||||
%fdupes %{buildroot}%{p_prefix}
|
||||
%endif
|
||||
|
||||
%if %{with hpc}
|
||||
|
||||
%define hpc_module_pname ${python_flavor}-numpy
|
||||
%{python_expand # Don't package testsuite
|
||||
python_flavor=`cat _current_flavor`
|
||||
sitesearch_path=`$python -c "import sysconfig as s; print(s.get_paths(vars={'platbase':'%{hpc_prefix}','base':'%{hpc_prefix}'}).get('platlib'))"`
|
||||
rm -rf %{buildroot}${sitesearch_path}/numpy/{,_core,distutils,f2py,fft,lib,linalg,ma,matrixlib,oldnumeric,polynomial,random,testing}/tests
|
||||
%hpc_write_modules_files
|
||||
#%%Module1.0#####################################################################
|
||||
|
||||
proc ModulesHelp { } {
|
||||
|
||||
puts stderr " "
|
||||
puts stderr "This module loads the %{pname} library built with the %{compiler_family} compiler"
|
||||
puts stderr "toolchain."
|
||||
puts stderr "\nVersion %{version}\n"
|
||||
|
||||
}
|
||||
module-whatis "Name: %{pname} built with %{compiler_family} compiler"
|
||||
module-whatis "Version: %{version}"
|
||||
module-whatis "Category: python module"
|
||||
module-whatis "Description: %{SUMMARY:0}"
|
||||
module-whatis "URL %{url}"
|
||||
|
||||
set version %{version}
|
||||
|
||||
if [ expr [ module-info mode load ] || [module-info mode display ] ] {
|
||||
if { ![is-loaded intel] && ![is-loaded openblas] } {
|
||||
module load openblas
|
||||
}
|
||||
}
|
||||
|
||||
prepend-path PATH %{hpc_bindir}
|
||||
prepend-path PYTHONPATH ${sitesearch_path}
|
||||
|
||||
setenv %{hpc_upcase_trans_hyph %{pname}}_DIR %{hpc_prefix}
|
||||
setenv %{hpc_upcase_trans_hyph %{pname}}_BIN %{hpc_bindir}
|
||||
|
||||
family "NumPy"
|
||||
EOF
|
||||
}
|
||||
|
||||
%endif
|
||||
|
||||
%check
|
||||
# https://numpy.org/doc/stable/dev/development_environment.html#running-tests
|
||||
%if %{without hpc}
|
||||
export PATH="%{buildroot}%{_bindir}:$PATH"
|
||||
|
||||
mkdir -p testing
|
||||
cp pytest.ini testing/
|
||||
pushd testing
|
||||
|
||||
# flaky tests
|
||||
test_failok+=" or test_structured_object_indexing"
|
||||
test_failok+=" or test_structured_object_item_setting"
|
||||
# flaky due to memory consumption
|
||||
test_failok+=" or test_big_arrays"
|
||||
# gh#numpy/numpy#22825
|
||||
test_failok+=" or TestPrintOptions"
|
||||
# gh#numpy/numpy#22835
|
||||
test_failok+=" or test_keepdims_out"
|
||||
# boo#1148173 gh#numpy/numpy#14438
|
||||
%ifarch ppc64 ppc64le
|
||||
test_failok+=" or test_generalized_sq"
|
||||
# situation with IBM and double numbers is ... complicated
|
||||
# gh#numpy/numpy#21094
|
||||
test_failok+=" or test_ppc64_ibm_double_double128"
|
||||
%endif
|
||||
# these tests fail on big endian gh#numpy/numpy#11831
|
||||
%ifarch s390x ppc ppc64
|
||||
test_failok+=" or TestFReturnCharacter"
|
||||
%endif
|
||||
# missing instruction set
|
||||
%ifarch s390x
|
||||
test_failok+=" or test_truncate_f32"
|
||||
%endif
|
||||
%ifarch %{ix86}
|
||||
# (arm 32-bit seems okay here)
|
||||
# gh#numpy/numpy#18387
|
||||
test_failok+=" or test_pareto"
|
||||
# gh#numpy/numpy#18388
|
||||
test_failok+=" or test_float_remainder_overflow"
|
||||
%endif
|
||||
%ifarch %{ix86} %{arm32}
|
||||
# too much memory for 32bit
|
||||
test_failok+=" or test_identityless_reduction_huge_array"
|
||||
test_failok+=" or test_huge_vectordot"
|
||||
# invalid int type for 32bit
|
||||
test_failok+=" or (test_kind and test_quad_precision)"
|
||||
test_failok+=" or (test_kind and test_int)"
|
||||
test_failok+=" or (test_kind and test_real)"
|
||||
test_failok+=" or (test_multinomial_pvals_float32)"
|
||||
%endif
|
||||
%ifarch %{arm}
|
||||
# https://github.com/numpy/numpy/issues/24001
|
||||
test_failok+=" or (test_cpu_features and test_features)"
|
||||
test_failok+=" or (test_umath and test_unary_spurious_fpexception)"
|
||||
%endif
|
||||
%ifarch riscv64
|
||||
# These tests fail due to non-portable assumptions about the signbit of NaN
|
||||
# gh#numpy/numpy#8213
|
||||
test_failok+=" or (test_umath and test_fpclass)"
|
||||
test_failok+=" or (test_numeric and TestBoolCmp and test_float)"
|
||||
test_failok+=" or (test_umath and test_fp_noncontiguous)"
|
||||
%endif
|
||||
# These tests fail due to being unable to run numpy-config directly in the
|
||||
# source tree
|
||||
test_failok+=" or test_configtool_cflags or test_configtool_pkgconfigdir"
|
||||
test_failok+=" or test_configtool_version"
|
||||
# ??
|
||||
test_failok+=" or test_limited_api"
|
||||
|
||||
echo "
|
||||
import sys
|
||||
import numpy
|
||||
r = numpy.test(label='full', verbose=2,
|
||||
extra_argv=['-v', '-n', 'auto', '-k'] + sys.argv[1:])
|
||||
sys.exit(0 if r else 1)
|
||||
" > runobstest.py
|
||||
|
||||
%{python_expand # for all python3 flavors
|
||||
export PYTHONPATH=%{buildroot}%{$python_sitearch}
|
||||
export PYTHONDONTWRITEBYTECODE=1
|
||||
[ -n "$test_failok" ] && $python runobstest.py "${test_failok:4}" ||:
|
||||
# test_new_policy: duplicates test runs and output and does not follow our deselection
|
||||
$python runobstest.py "not (test_new_policy ${test_failok} or slow)"
|
||||
}
|
||||
|
||||
popd
|
||||
%endif
|
||||
|
||||
%if %{without hpc}
|
||||
%pre
|
||||
# If libalternatives is used: Removing old update-alternatives entries.
|
||||
%python_libalternatives_reset_alternative f2py
|
||||
|
||||
%post
|
||||
%python_install_alternative f2py numpy-config
|
||||
|
||||
%postun
|
||||
%python_uninstall_alternative f2py numpy-config
|
||||
%endif
|
||||
|
||||
%files %{python_files}
|
||||
%doc README.md THANKS.txt
|
||||
%license LICENSE.txt
|
||||
%if %{without hpc}
|
||||
%python_alternative %{_bindir}/f2py
|
||||
%python_alternative %{_bindir}/numpy-config
|
||||
%{python_sitearch}/numpy/
|
||||
%{python_sitearch}/numpy-%{version}.dist-info
|
||||
%exclude %{python_sitearch}/numpy/_core/include
|
||||
%exclude %{python_sitearch}/numpy/_core/lib/libnpymath.a
|
||||
%exclude %{python_sitearch}/numpy/_core/lib/pkgconfig/numpy.pc
|
||||
%exclude %{python_sitearch}/numpy/distutils/mingw/*.c
|
||||
%exclude %{python_sitearch}/numpy/distutils/checks/*.c
|
||||
%exclude %{python_sitearch}/numpy/f2py/src/
|
||||
%exclude %{python_sitearch}/numpy/random/lib/libnpyrandom.a
|
||||
%else
|
||||
%if "%{python_flavor}" == "python3" || "%{python_provides}" == "python3"
|
||||
%{p_bindir}/f2py
|
||||
%{p_bindir}/numpy-config
|
||||
%else
|
||||
%exclude %{p_bindir}/f2py
|
||||
%exclude %{p_bindir}/numpy-config
|
||||
%endif
|
||||
%{p_python_sitearch}/numpy/
|
||||
%{p_python_sitearch}/numpy-%{version}.dist-info
|
||||
%exclude %{p_python_sitearch}/numpy/_core/include/
|
||||
%exclude %{p_python_sitearch}/numpy/_core/lib/libnpymath.a
|
||||
%exclude %{p_python_sitearch}/numpy/_core/lib/pkgconfig/numpy.pc
|
||||
%exclude %{p_python_sitearch}/numpy/random/lib/libnpyrandom.a
|
||||
%exclude %{p_python_sitearch}/numpy/distutils/mingw/*.c
|
||||
%exclude %{p_python_sitearch}/numpy/distutils/checks/*.c
|
||||
%exclude %{p_python_sitearch}/numpy/f2py/src/
|
||||
%endif
|
||||
|
||||
%if %{with hpc}
|
||||
%define hpc_module_pname %{python_flavor}-numpy
|
||||
%{hpc_modules_files}
|
||||
%{hpc_dirs}
|
||||
%dir %{hpc_bindir}
|
||||
%dir %{hpc_libdir}/python%{hpc_python_version}
|
||||
%dir %{p_python_sitearch}
|
||||
%endif
|
||||
|
||||
%files %{python_files devel}
|
||||
%license LICENSE.txt
|
||||
%if %{without hpc}
|
||||
%{python_sitearch}/numpy/_core/include/
|
||||
%if 0%{python_version_nodots} < 312
|
||||
%{python_sitearch}/numpy/distutils/mingw/*.c
|
||||
%{python_sitearch}/numpy/distutils/checks/*.c
|
||||
%endif
|
||||
%{python_sitearch}/numpy/f2py/src/
|
||||
%{python_sitearch}/numpy/_core/lib/libnpymath.a
|
||||
%{python_sitearch}/numpy/_core/lib/pkgconfig/numpy.pc
|
||||
%{python_sitearch}/numpy/random/lib/libnpyrandom.a
|
||||
%else
|
||||
%{p_python_sitearch}/numpy/_core/include/
|
||||
%{p_python_sitearch}/numpy/_core/lib/pkgconfig/numpy.pc
|
||||
%{p_python_sitearch}/numpy/_core/lib/libnpymath.a
|
||||
%{p_python_sitearch}/numpy/random/lib/libnpyrandom.a
|
||||
%if 0%{python_version_nodots} < 312
|
||||
%{p_python_sitearch}/numpy/distutils/mingw/*.c
|
||||
%{p_python_sitearch}/numpy/distutils/checks/*.c
|
||||
%endif
|
||||
%{p_python_sitearch}/numpy/f2py/src/
|
||||
%endif
|
||||
|
||||
%changelog
|
||||
Reference in New Issue
Block a user