forked from pool/python-numpy
Markéta Machová
9d67365ab9
- Update to 1.25.1:
* NumPy 1.25.1 is a maintenance release that fixes bugs and regressions
discovered after the 1.25.0 release. The Python versions supported by
this release are 3.9-3.11.
* #23968: MAINT: prepare 1.25.x for further development
* #24036: BLD: Port long double identification to C for meson
* #24037: BUG: Fix reduction return NULL to be goto fail
* #24038: BUG: Avoid undefined behavior in array.astype()
* #24039: BUG: Ensure __array_ufunc__ works without any kwargs passed
* #24117: MAINT: Pin urllib3 to avoid anaconda-client bug.
* #24118: TST: Pin pydantic<2 in Pyodide workflow
* #24119: MAINT: Bump pypa/cibuildwheel from 2.13.0 to 2.13.1
* #24120: MAINT: Bump actions/checkout from 3.5.2 to 3.5.3
* #24122: BUG: Multiply or Divides using SIMD without a full vector can...
* #24127: MAINT: testing for IS_MUSL closes #24074
* #24128: BUG: Only replace dtype temporarily if dimensions changed
* #24129: MAINT: Bump actions/setup-node from 3.6.0 to 3.7.0
* #24134: BUG: Fix private procedures in f2py modules
- Skipped 1.25.0:
* The NumPy 1.25.0 release continues the ongoing work to improve the
handling and promotion of dtypes, increase the execution speed, and
clarify the documentation. There has also been work to prepare for the
future NumPy 2.0.0 release, resulting in a large number of new and
expired deprecation. Highlights are:
- Support for MUSL, there are now MUSL wheels.
- Support the Fujitsu C/C++ compiler.
- Object arrays are now supported in einsum
- Support for inplace matrix multiplication (@=).
* Full changelog: https://github.com/numpy/numpy/releases/tag/v1.25.0
The Python versions supported in this release are 3.9-3.11.
- Remove upstream patch:
* remove-deprecated-hypothesis-funcs.patch
OBS-URL: https://build.opensuse.org/request/show/1099876
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-numpy?expand=0&rev=131
430 lines
13 KiB
RPMSpec
430 lines
13 KiB
RPMSpec
#
|
|
# spec file
|
|
#
|
|
# Copyright (c) 2023 SUSE LLC
|
|
#
|
|
# All modifications and additions to the file contributed by third parties
|
|
# remain the property of their copyright owners, unless otherwise agreed
|
|
# upon. The license for this file, and modifications and additions to the
|
|
# file, is the same license as for the pristine package itself (unless the
|
|
# license for the pristine package is not an Open Source License, in which
|
|
# case the license is the MIT License). An "Open Source License" is a
|
|
# license that conforms to the Open Source Definition (Version 1.9)
|
|
# published by the Open Source Initiative.
|
|
|
|
# Please submit bugfixes or comments via https://bugs.opensuse.org/
|
|
#
|
|
|
|
|
|
%global flavor @BUILD_FLAVOR@%{nil}
|
|
%define ver 1.25.1
|
|
%define _ver 1_25_1
|
|
%define pname python-numpy
|
|
%define plainpython python
|
|
%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
|
|
%if "%{flavor}" == ""
|
|
%bcond_with hpc
|
|
%bcond_with openblas
|
|
%endif
|
|
%if "%{flavor}" == "gnu-hpc"
|
|
%bcond_without hpc
|
|
%endif
|
|
%if "%{flavor}" == "gnu7-hpc"
|
|
%define c_f_ver 7
|
|
%bcond_without hpc
|
|
%endif
|
|
%if %{with hpc}
|
|
%bcond_without openblas
|
|
%endif
|
|
%if 0%{?sle_version} == 120300
|
|
%{?with_openblas:ExclusiveArch: do_not_build}
|
|
%endif
|
|
%ifarch s390 s390x
|
|
%{?with_openblas:ExclusiveArch: do_not_build}
|
|
%endif
|
|
%{?with_hpc:%{hpc_requires}}
|
|
#
|
|
%if 0%{?suse_version} > 1500
|
|
%bcond_without libalternatives
|
|
%bcond_without cblas
|
|
%else
|
|
%bcond_with libalternatives
|
|
%bcond_with cblas
|
|
%endif
|
|
#
|
|
%bcond_with ringdisabled
|
|
#
|
|
%if %{without hpc}
|
|
%define package_name %{pname}
|
|
%define p_python_sitearch %{python_sitearch}
|
|
%define p_prefix %{_prefix}
|
|
%define p_bindir %{_bindir}
|
|
%else
|
|
%{!?compiler_family:%global compiler_family gnu}
|
|
%{hpc_init -c %{compiler_family} %{?c_f_ver:-v %{c_f_ver}} %{?mpi_ver:-V %{mpi_ver}}}
|
|
%define package_name %{hpc_package_name %{_ver}}
|
|
%define p_python_sitearch %{hpc_python_sitearch}
|
|
%define p_prefix %{hpc_prefix}
|
|
%define p_bindir %{hpc_bindir}
|
|
# Magic for OBS Staging. Only build the flavors required by
|
|
# other packages in the ring.
|
|
%if %{with ringdisabled}
|
|
ExclusiveArch: do_not_build
|
|
%endif
|
|
%endif
|
|
%{?sle15_python_module_pythons}
|
|
Name: %{package_name}
|
|
# set %%ver and %%_ver instead above
|
|
Version: %{ver}
|
|
Release: 0
|
|
Summary: NumPy array processing for numbers, strings, records and objects
|
|
License: BSD-3-Clause
|
|
URL: http://www.numpy.org/
|
|
Source: https://files.pythonhosted.org/packages/source/n/numpy/numpy-%{version}.tar.gz
|
|
Source99: python-numpy-rpmlintrc
|
|
# PATCH-FIX-OPENSUSE numpy-buildfix.patch -- openSUSE-specific build fixes
|
|
Patch0: numpy-buildfix.patch
|
|
# PATCH-FIX-OPENSUSE numpy-1.9.0-remove-__declspec.patch -- fix for spurious compiler warnings that cause build failure
|
|
Patch1: numpy-1.9.0-remove-__declspec.patch
|
|
# PATCH-FIX-OPENSUSE Ignore DeprecationWarnings when importing pkg_resources
|
|
Patch2: ignore-pkg_resources-deprecation.patch
|
|
BuildRequires: %{python_module Cython >= 0.29.30}
|
|
BuildRequires: %{python_module base >= 3.8}
|
|
BuildRequires: %{python_module devel}
|
|
BuildRequires: %{python_module setuptools >= 60.0.0}
|
|
BuildRequires: gcc-c++
|
|
BuildRequires: python-rpm-macros >= 20210929
|
|
BuildConflicts: gcc11 < 11.2
|
|
%if 0%{?suse_version}
|
|
BuildRequires: fdupes
|
|
%endif
|
|
# SECTION test requirements
|
|
BuildRequires: %{python_module pytest >= 6.2.5}
|
|
BuildRequires: %{python_module hypothesis >= 6.24.1}
|
|
BuildRequires: %{python_module pytest-xdist}
|
|
BuildRequires: %{python_module testsuite}
|
|
BuildRequires: %{python_module typing-extensions >= 4.2.0}
|
|
# /SECTION
|
|
%if %{without hpc}
|
|
# Last version which packaged %%{_bindir}/f2py without update-alternatives
|
|
Conflicts: %{plainpython}-numpy <= 1.12.0
|
|
%if 0%{?suse_version}
|
|
BuildRequires: gcc-fortran
|
|
%else
|
|
BuildRequires: gcc-gfortran
|
|
%endif
|
|
%if %{with openblas}
|
|
BuildRequires: openblas-devel > 0.3.20
|
|
%else
|
|
BuildRequires: blas-devel
|
|
BuildRequires: lapack-devel
|
|
%if %{with cblas}
|
|
# openblas has significantly better performance for some operations
|
|
BuildRequires: cblas-devel
|
|
Recommends: libopenblas_pthreads0
|
|
%endif
|
|
%endif
|
|
%if %{with libalternatives}
|
|
BuildRequires: alts
|
|
Requires: alts
|
|
%else
|
|
Requires(post): update-alternatives
|
|
Requires(postun):update-alternatives
|
|
%endif
|
|
%else
|
|
BuildRequires: %{compiler_family}%{?c_f_ver}-compilers-hpc-macros-devel
|
|
BuildRequires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc-devel
|
|
BuildRequires: lua-lmod
|
|
BuildRequires: suse-hpc
|
|
Requires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc
|
|
%endif
|
|
%python_subpackages
|
|
|
|
%description
|
|
NumPy is a general-purpose array-processing package designed to
|
|
efficiently manipulate large multi-dimensional arrays of arbitrary
|
|
records without sacrificing too much speed for small multi-dimensional
|
|
arrays. NumPy is built on the Numeric code base and adds features
|
|
introduced by numarray as well as an extended C-API and the ability to
|
|
create arrays of arbitrary type which also makes NumPy suitable for
|
|
interfacing with general-purpose data-base applications.
|
|
|
|
There are also basic facilities for discrete fourier transform,
|
|
basic linear algebra and random number generation.
|
|
|
|
%{?with_hpc:%{hpc_python_master_package -L -a }}
|
|
|
|
%package devel
|
|
Summary: Development files for numpy applications
|
|
Requires: %{name} = %{version}
|
|
Requires: python-devel
|
|
Requires: %plainpython(abi) = %{python_version}
|
|
%if %{without hpc}
|
|
%if %{with openblas}
|
|
Requires: openblas-devel
|
|
%else
|
|
Requires: blas-devel
|
|
%if %{with cblas}
|
|
Requires: cblas-devel
|
|
%endif
|
|
Requires: lapack-devel
|
|
%endif
|
|
%else
|
|
Requires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc-devel
|
|
%{hpc_requires_devel}
|
|
%endif
|
|
|
|
%description devel
|
|
This package contains files for developing applications using numpy.
|
|
|
|
%{?with_hpc:%{hpc_python_master_package devel -a }}
|
|
|
|
%prep
|
|
%autosetup -p1 -n numpy-%{version}
|
|
# Fix non-executable scripts
|
|
sed -i '1s/^#!.*$//' numpy/{compat/setup,random/_examples/cython/setup,distutils/{conv_template,cpuinfo,exec_command,from_template,setup,system_info},f2py/{__init__,auxfuncs,capi_maps,cb_rules,cfuncs,common_rules,crackfortran,diagnose,f2py2e,f90mod_rules,func2subr,rules,setup,use_rules},matrixlib/setup,setup,testing/{print_coercion_tables,setup}}.py
|
|
sed -i '1s/^#!.*$//' numpy/random/_examples/cython/*.pyx
|
|
|
|
# force cythonization
|
|
rm -f PKG-INFO
|
|
|
|
%build
|
|
%define _lto_cflags %{nil}
|
|
%if %{with hpc}
|
|
%hpc_setup
|
|
module load openblas
|
|
export CFLAGS="$(pkg-config --cflags openblas) %{optflags} -fno-strict-aliasing" LIBS="$(pkg-config --libs openblas)"
|
|
cat > site.cfg <<EOF
|
|
[openblas]
|
|
libraries = openblas
|
|
library_dirs = $OPENBLAS_LIB
|
|
include_dirs = $OPENBLAS_INC
|
|
EOF
|
|
%else
|
|
export CFLAGS="%{optflags} -fno-strict-aliasing"
|
|
%endif
|
|
|
|
%python_build
|
|
|
|
%install
|
|
%{?with_hpc:%hpc_setup}
|
|
%{?with_hpc:module load openblas}
|
|
|
|
%python_exec setup.py install --prefix=%{p_prefix} --root=%{buildroot}
|
|
|
|
%if !%{with hpc}
|
|
%python_clone -a %{buildroot}%{_bindir}/f2py
|
|
%python_expand rm %{buildroot}%{$python_sitearch}/numpy/core/include/numpy/.doxyfile
|
|
%else
|
|
rm %{buildroot}%{p_python_sitearch}/numpy/core/include/numpy/.doxyfile
|
|
%endif
|
|
|
|
%if 0%{?suse_version}
|
|
%fdupes %{buildroot}%{p_prefix}
|
|
%endif
|
|
|
|
%if %{with hpc}
|
|
|
|
%define hpc_module_pname ${python_flavor}-numpy
|
|
%{python_expand # Don't package testsuite
|
|
python_flavor=`cat _current_flavor`
|
|
sitesearch_path=`$python -c "import sysconfig as s; print(s.get_paths(vars={'platbase':'%{hpc_prefix}','base':'%{hpc_prefix}'}).get('platlib'))"`
|
|
rm -rf %{buildroot}${sitesearch_path}/numpy/{,core,distutils,f2py,fft,lib,linalg,ma,matrixlib,oldnumeric,polynomial,random,testing}/tests
|
|
%hpc_write_modules_files
|
|
#%%Module1.0#####################################################################
|
|
|
|
proc ModulesHelp { } {
|
|
|
|
puts stderr " "
|
|
puts stderr "This module loads the %{pname} library built with the %{compiler_family} compiler"
|
|
puts stderr "toolchain."
|
|
puts stderr "\nVersion %{version}\n"
|
|
|
|
}
|
|
module-whatis "Name: %{pname} built with %{compiler_family} compiler"
|
|
module-whatis "Version: %{version}"
|
|
module-whatis "Category: python module"
|
|
module-whatis "Description: %{SUMMARY:0}"
|
|
module-whatis "URL %{url}"
|
|
|
|
set version %{version}
|
|
|
|
if [ expr [ module-info mode load ] || [module-info mode display ] ] {
|
|
if { ![is-loaded intel] && ![is-loaded openblas] } {
|
|
module load openblas
|
|
}
|
|
}
|
|
|
|
prepend-path PATH %{hpc_bindir}
|
|
prepend-path PYTHONPATH ${sitesearch_path}
|
|
|
|
setenv %{hpc_upcase_trans_hyph %{pname}}_DIR %{hpc_prefix}
|
|
setenv %{hpc_upcase_trans_hyph %{pname}}_BIN %{hpc_bindir}
|
|
|
|
family "NumPy"
|
|
EOF
|
|
}
|
|
|
|
%endif
|
|
|
|
%check
|
|
# https://numpy.org/doc/stable/dev/development_environment.html#running-tests
|
|
%if %{without hpc}
|
|
export PATH="%{buildroot}%{_bindir}:$PATH"
|
|
|
|
mkdir -p testing
|
|
cp pytest.ini testing/
|
|
pushd testing
|
|
|
|
# flaky tests
|
|
test_failok+=" or test_structured_object_indexing"
|
|
test_failok+=" or test_structured_object_item_setting"
|
|
# flaky due to memory consumption
|
|
test_failok+=" or test_big_arrays"
|
|
# gh#numpy/numpy#22825
|
|
test_failok+=" or TestPrintOptions"
|
|
# gh#numpy/numpy#22835
|
|
test_failok+=" or test_keepdims_out"
|
|
# boo#1148173 gh#numpy/numpy#14438
|
|
%ifarch ppc64 ppc64le
|
|
test_failok+=" or test_generalized_sq"
|
|
# situation with IBM and double numbers is ... complicated
|
|
# gh#numpy/numpy#21094
|
|
test_failok+=" or test_ppc64_ibm_double_double128"
|
|
%endif
|
|
# these tests fail on big endian gh#numpy/numpy#11831
|
|
%ifarch s390x ppc ppc64
|
|
test_failok+=" or TestFReturnCharacter"
|
|
%endif
|
|
# missing instruction set
|
|
%ifarch s390x
|
|
test_failok+=" or test_truncate_f32"
|
|
%endif
|
|
%ifarch %{ix86}
|
|
# (arm 32-bit seems okay here)
|
|
# gh#numpy/numpy#18387
|
|
test_failok+=" or test_pareto"
|
|
# gh#numpy/numpy#18388
|
|
test_failok+=" or test_float_remainder_overflow"
|
|
%endif
|
|
%ifarch %{ix86} %{arm32}
|
|
# too much memory for 32bit
|
|
test_failok+=" or test_identityless_reduction_huge_array"
|
|
test_failok+=" or test_huge_vectordot"
|
|
# invalid int type for 32bit
|
|
test_failok+=" or (test_kind and test_quad_precision)"
|
|
test_failok+=" or (test_kind and test_int)"
|
|
test_failok+=" or (test_kind and test_real)"
|
|
%endif
|
|
%ifarch %{arm}
|
|
# https://github.com/numpy/numpy/issues/24001
|
|
test_failok+=" or (test_cpu_features and test_impossible_feature_enable)"
|
|
test_failok+=" or (test_cpu_features and test_features)"
|
|
test_failok+=" or (test_umath and test_unary_spurious_fpexception)"
|
|
%endif
|
|
%ifarch riscv64
|
|
# These tests fail due to non-portable assumptions about the signbit of NaN
|
|
# gh#numpy/numpy#8213
|
|
test_failok+=" or test_fpclass"
|
|
test_failok+=" or test_float"
|
|
%endif
|
|
|
|
echo "
|
|
import sys
|
|
import numpy
|
|
r = numpy.test(label='full', verbose=2,
|
|
extra_argv=['-v', '-n', 'auto', '-k'] + sys.argv[1:])
|
|
sys.exit(0 if r else 1)
|
|
" > runobstest.py
|
|
|
|
%{python_expand # for all python3 flavors
|
|
export PYTHONPATH=%{buildroot}%{$python_sitearch}
|
|
export PYTHONDONTWRITEBYTECODE=1
|
|
[ -n "$test_failok" ] && $python runobstest.py "${test_failok:4}" ||:
|
|
# test_new_policy: duplicates test runs and output and does not follow our deselection
|
|
$python runobstest.py "not (test_new_policy ${test_failok})"
|
|
}
|
|
|
|
popd
|
|
%endif
|
|
|
|
%if %{without hpc}
|
|
%pre
|
|
# If libalternatives is used: Removing old update-alternatives entries.
|
|
%python_libalternatives_reset_alternative f2py
|
|
|
|
%post
|
|
%python_install_alternative f2py
|
|
|
|
%postun
|
|
%python_uninstall_alternative f2py
|
|
%endif
|
|
|
|
%files %{python_files}
|
|
%doc README.md THANKS.txt
|
|
%if %{without hpc}
|
|
%python_alternative %{_bindir}/f2py
|
|
%if "%{python_flavor}" == "python3" || "%{python_provides}" == "python3"
|
|
%{_bindir}/f2py3
|
|
%else
|
|
%exclude %{_bindir}/f2py3
|
|
%endif
|
|
%{_bindir}/f2py%{python_bin_suffix}
|
|
%{python_sitearch}/numpy/
|
|
%{python_sitearch}/numpy-%{version}-py*.egg-info
|
|
%license %{python_sitearch}/numpy/LICENSE.txt
|
|
%exclude %{python_sitearch}/numpy/core/include/
|
|
%exclude %{python_sitearch}/numpy/distutils/mingw/*.c
|
|
%exclude %{python_sitearch}/numpy/distutils/checks/*.c
|
|
%exclude %{python_sitearch}/numpy/f2py/src/
|
|
%exclude %{python_sitearch}/numpy/core/lib/libnpymath.a
|
|
%exclude %{python_sitearch}/numpy/random/lib/libnpyrandom.a
|
|
%else
|
|
%if "%{python_flavor}" == "python3" || "%{python_provides}" == "python3"
|
|
%{p_bindir}/f2py
|
|
%{p_bindir}/f2py3
|
|
%else
|
|
%exclude %{p_bindir}/f2py
|
|
%exclude %{p_bindir}/f2py3
|
|
%endif
|
|
%{p_bindir}/f2py%{python_bin_suffix}
|
|
%{p_python_sitearch}/numpy/
|
|
%{p_python_sitearch}/numpy-%{version}-py*.egg-info
|
|
%license %{p_python_sitearch}/numpy/LICENSE.txt
|
|
%exclude %{p_python_sitearch}/numpy/core/include/
|
|
%exclude %{p_python_sitearch}/numpy/core/lib/libnpymath.a
|
|
%exclude %{p_python_sitearch}/numpy/random/lib/libnpyrandom.a
|
|
%exclude %{p_python_sitearch}/numpy/distutils/mingw/*.c
|
|
%exclude %{p_python_sitearch}/numpy/distutils/checks/*.c
|
|
%exclude %{p_python_sitearch}/numpy/f2py/src/
|
|
%endif
|
|
|
|
%if %{with hpc}
|
|
%define hpc_module_pname %{python_flavor}-numpy
|
|
%{hpc_modules_files}
|
|
%{hpc_dirs}
|
|
%dir %{hpc_bindir}
|
|
%dir %{hpc_libdir}/python%{hpc_python_version}
|
|
%dir %{p_python_sitearch}
|
|
%endif
|
|
|
|
%files %{python_files devel}
|
|
%license LICENSE.txt
|
|
%if %{without hpc}
|
|
%{python_sitearch}/numpy/core/include/
|
|
%{python_sitearch}/numpy/distutils/mingw/*.c
|
|
%{python_sitearch}/numpy/distutils/checks/*.c
|
|
%{python_sitearch}/numpy/f2py/src/
|
|
%{python_sitearch}/numpy/core/lib/libnpymath.a
|
|
%{python_sitearch}/numpy/random/lib/libnpyrandom.a
|
|
%else
|
|
%{p_python_sitearch}/numpy/core/include/
|
|
%{p_python_sitearch}/numpy/core/lib/libnpymath.a
|
|
%{p_python_sitearch}/numpy/random/lib/libnpyrandom.a
|
|
%{p_python_sitearch}/numpy/distutils/mingw/*.c
|
|
%{p_python_sitearch}/numpy/distutils/checks/*.c
|
|
%{p_python_sitearch}/numpy/f2py/src/
|
|
%endif
|
|
|
|
%changelog
|