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- Drop pandas-pr58720-xarray-dp.patch: It does no longer xfail OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pandas?expand=0&rev=127
2024-09-08 18:12:30 +02:00
#
# spec file for package python-pandas
#
# Copyright (c) 2024 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
# Please submit bugfixes or comments via https://bugs.opensuse.org/
#
%global flavor @BUILD_FLAVOR@%{nil}
%{?sle15_python_module_pythons}
%if "%{flavor}" == ""
%define psuffix %{nil}
%bcond_with test
%else
%define psuffix -%{flavor}
%bcond_without test
%if "%{flavor}" != "test-py310"
%define skip_python310 1
%endif
%if "%{flavor}" != "test-py311"
%define skip_python311 1
%endif
%if "%{flavor}" != "test-py312"
%define skip_python312 1
%endif
# Skip empty buildsets, last one is for sle15_python_module_pythons
%if "%{shrink:%{pythons}}" == "" || ("%pythons" == "python311" && 0%{?skip_python311})
ExclusiveArch: donotbuild
%define python_module() %flavor-not-enabled-in-buildset-for-suse-%{?suse_version}
%endif
%endif
# Only test the core functionality in Ring1 (Lettered Staging)
%bcond_with ringdisabled
# s3fs not available
%bcond_with aws
# pandas-gbq not available
%bcond_with gcp
# xlsb not available
%bcond_with xslb
%bcond_with consortium_standard
%bcond_with calamine
%bcond_with adbc
# depend/not depend on python-pyarrow and apache-arrow [bsc#1218592]
%bcond_without pyarrow
%if %{suse_version} <= 1500
# requires __has_builtin with keywords
%define gccver 13
%endif
Name: python-pandas%{psuffix}
# Set version through _service
Version: 2.2.2
Release: 0
Summary: Python data structures for data analysis, time series, and statistics
License: BSD-3-Clause
URL: https://pandas.pydata.org/
# SourceRepository: https://github.com/pandas-dev/pandas
# Must be created by cloning through `osc service runall`: gh#pandas-dev/pandas#54903, gh#pandas-dev/pandas#54907
Source0: pandas-%{version}.tar.gz
# PATCH-FIX-UPSTREAM pandas-pr58269-pyarrow16xpass.patch -- gh#pandas-dev/pandas#58269
Patch0: pandas-pr58269-pyarrow16xpass.patch
# PATCH-FIX-UPSTREAM pandas-pr58484-matplotlib.patch -- gh#pandas-dev/pandas#58484 mcepl@suse.com, make pandas compatible with the modern matplotlib
Patch2: pandas-pr58484-matplotlib.patch
# PATCH-FIX-UPSTREAM pandas-pr59175-matplotlib.patch -- gh#pandas-dev/pandas#59175
Patch3: https://github.com/pandas-dev/pandas/pull/59175.patch#/pandas-pr59175-matplotlib.patch
# PATCH-FIX-UPSTREAM pandas-pr59353-np2eval.patch -- gh#pandas-dev/pandas#59144 backported to 2.2, no new tests, see gh#pandas-dev/pandas#58548, gh#pandas-dev/pandas#59353
Patch4: pandas-pr59353-np2eval.patch
%if !%{with test}
BuildRequires: %{python_module Cython >= 3.0.5}
BuildRequires: %{python_module devel >= 3.9}
BuildRequires: %{python_module meson-python >= 0.13.1}
BuildRequires: %{python_module numpy-devel >= 1.26}
BuildRequires: %{python_module pip}
BuildRequires: %{python_module versioneer-toml}
BuildRequires: %{python_module wheel}
BuildRequires: fdupes
BuildRequires: gcc%{?gccver}-c++
BuildRequires: git-core
BuildRequires: meson >= 1.2.1
%endif
BuildRequires: python-rpm-macros
Requires: python-python-dateutil >= 2.8.2
Requires: python-pytz >= 2020.1
Requires: timezone >= 2022a
Obsoletes: python-pandas-doc < %{version}
Provides: python-pandas-doc = %{version}
%if 0%{python_version_nodots} < 311
Requires: python-numpy >= 1.22.4
%else
%if 0%{python_version_nodots} == 311
Requires: python-numpy >= 1.23.2
%else
Requires: python-numpy >= 1.26
%endif
%endif
# SECTION extras
Recommends: python-pandas-performance
Recommends: python-pandas-pyarrow
Suggests: python-pandas-all
Suggests: python-pandas-clipboard
Suggests: python-pandas-compression
Suggests: python-pandas-computation
Suggests: python-pandas-excel
Suggests: python-pandas-fss
Suggests: python-pandas-hdf5
Suggests: python-pandas-html
Suggests: python-pandas-mysql
Suggests: python-pandas-output_formatting
Suggests: python-pandas-plot
Suggests: python-pandas-postgresql
Suggests: python-pandas-spss
Suggests: python-pandas-sql-other
Suggests: python-pandas-test
Suggests: python-pandas-xml
%{?with_aws:Suggests: python-pandas-aws}
%{?with_gcp:Suggests: python-pandas-gcp}
%{?with_pyarrow:Suggests: python-pandas-parquet}
%{?with_pyarrow:Suggests: python-pandas-feather}
# /SECTION
%if %{with test}
# required for sqlite3 tests
BuildRequires: %{pythons}
BuildRequires: %{python_module pandas-test = %{version}}
BuildRequires: memory-constraints
BuildRequires: xvfb-run
%if !%{with ringdisabled}
BuildRequires: %{python_module IPython}
BuildRequires: %{python_module dask-array}
BuildRequires: %{python_module dask-dataframe}
BuildRequires: %{python_module pandas-all = %{version}}
BuildRequires: %{python_module pandas-clipboard = %{version}}
BuildRequires: %{python_module pandas-compression = %{version}}
BuildRequires: %{python_module pandas-computation = %{version}}
BuildRequires: %{python_module pandas-excel = %{version}}
%{?with_pyarrow:BuildRequires: %{python_module pandas-feather = %{version}}}
BuildRequires: %{python_module pandas-fss = %{version}}
BuildRequires: %{python_module pandas-hdf5 = %{version}}
BuildRequires: %{python_module pandas-html = %{version}}
BuildRequires: %{python_module pandas-mysql = %{version}}
BuildRequires: %{python_module pandas-output_formatting = %{version}}
%{?with_pyarrow:BuildRequires: %{python_module pandas-parquet = %{version}}}
BuildRequires: %{python_module pandas-performance = %{version}}
BuildRequires: %{python_module pandas-plot = %{version}}
BuildRequires: %{python_module pandas-postgresql = %{version}}
%{?with_pyarrow:BuildRequires: %{python_module pandas-pyarrow = %{version}}}
BuildRequires: %{python_module pandas-spss = %{version}}
BuildRequires: %{python_module pandas-sql-other = %{version}}
BuildRequires: %{python_module pandas-xml = %{version}}
BuildRequires: xclip
%{?with_aws:BuildRequires: %{python_module pandas-aws = %{version}}}
%{?with_gcp:BuildRequires: %{python_module pandas-gcp = %{version}}}
%{?with_consortium_standard:BuildRequires: %{python_module pandas-consortium-standard = %{version}}}
%endif
%endif
%python_subpackages
%description
Pandas is a Python package providing data structures designed for
working with structured (tabular, multidimensional, potentially
heterogeneous) and time series data. It is a high-level building
block for doing data analysis in Python.
%package test
Summary: The python pandas[test] extra
Requires: python-hypothesis >= 6.46.1
Requires: python-pandas = %{version}
Requires: python-pytest >= 7.3.2
Requires: python-pytest-xdist >= 2.2.0
BuildArch: noarch
%description test
This package provides the [test] extra for python-pandas
%package pyarrow
Summary: The python pandas[pyarrow] extra
Requires: python-pandas = %{version}
Requires: python-pyarrow >= 10.0.1
BuildArch: noarch
%description pyarrow
This package provides the [pyarrow] extra for python-pandas
%package performance
Summary: The python pandas[performance] extra
Requires: python-Bottleneck >= 1.3.6
Requires: python-numba >= 0.56.4
Requires: python-numexpr >= 2.8.4
Requires: python-pandas = %{version}
BuildArch: noarch
%description performance
This package provides the [performance] extra for python-pandas
It is highly recommended to install this subpackage, as its dependencies
provide speed improvements, especially when working with large data sets.
%package computation
Summary: The python pandas[computation] extra
Requires: python-pandas = %{version}
Requires: python-scipy >= 1.10.0
Requires: python-xarray >= 2022.12.0
BuildArch: noarch
%description computation
This package provides the [computation] extra for python-pandas
%package fss
Summary: The python pandas[fss] extra
Requires: python-fsspec >= 2022.11
Requires: python-pandas = %{version}
BuildArch: noarch
%description fss
This package provides the [fss] extra for python-pandas
%package aws
Summary: The python pandas[aws] extra
Requires: python-pandas = %{version}
Requires: python-s3fs >= 2022.11
BuildArch: noarch
%description aws
This package provides the [aws] extra for python-pandas
%package gcp
Summary: The python pandas[gcp] extra
Requires: python-gcsfs >= 2022.11
Requires: python-pandas = %{version}
Requires: python-pandas-gbq >= 0.19.0
BuildArch: noarch
%description gcp
This package provides the [gcp] extra for python-pandas
%package excel
Summary: The python pandas[excel] extra
Requires: python-odfpy >= 1.4.1
Requires: python-openpyxl >= 3.1.0
Requires: python-pandas = %{version}
%{?with_xlsb:Requires: python-pyxlsb >= 1.0.10}
Requires: python-XlsxWriter >= 3.0.5
Requires: python-xlrd >= 2.0.1
%{?with_calamine:Requires: python-calamine >= 0.1.7}
BuildArch: noarch
%description excel
This package provides the [excel] extra for python-pandas.
(Except for pyxlsb and calamine which are not available as openSUSE rpm package)
%package parquet
Summary: The python pandas[parquet] extra
Requires: python-pandas = %{version}
Requires: python-pyarrow >= 10.0.1
BuildArch: noarch
%description parquet
This package provides the [parquet] extra for python-pandas
%package feather
Summary: The python pandas[feather] extra
Requires: python-pandas = %{version}
Requires: python-pyarrow >= 10.0.1
BuildArch: noarch
%description feather
This package provides the [feather] extra for python-pandas
%package hdf5
Summary: The python pandas[hdf5] extra
Requires: python-blosc
Requires: python-pandas = %{version}
Requires: python-tables >= 3.8.0
BuildArch: noarch
%description hdf5
This package provides the [hdf5] extra for python-pandas
%package spss
Summary: The python pandas[spss] extra
Requires: python-pandas = %{version}
Requires: python-pyreadstat >= 1.2.0
BuildArch: noarch
%description spss
This package provides the [spss] extra for python-pandas
%package postgresql
Summary: The python pandas[postgresql] extra
Requires: python-SQLAlchemy >= 2.0.0
Requires: python-pandas = %{version}
Requires: python-psycopg2 >= 2.9.6
%{?with_adbc:Requires: python-adbc-driver-postgresql >= 0.8}
BuildArch: noarch
%description postgresql
This package provides the [postgresql] extra for python-pandas
%package mysql
Summary: The python pandas[mysql] extra
Requires: python-PyMySQL >= 1.0.2
Requires: python-SQLAlchemy >= 2.0.0
Requires: python-pandas = %{version}
BuildArch: noarch
%description mysql
This package provides the [mysql] extra for python-pandas
%package sql-other
Summary: The python pandas[sql-other] extra
Requires: python-SQLAlchemy >= 2.0.0
%{?with_adbc:Requires: python-adbc-driver-postgresql >= 0.8}
%{?with_adbc:Requires: python-adbc-driver-sqlite >= 0.8}
Requires: python-pandas = %{version}
BuildArch: noarch
%description sql-other
This package provides the [sql-other] extra for python-pandas
%package html
Summary: The python pandas[html] extra
Requires: python-beautifulsoup4 >= 4.11.2
Requires: python-html5lib >= 1.1
Requires: python-lxml >= 4.9.2
Requires: python-pandas = %{version}
BuildArch: noarch
%description html
This package provides the [html] extra for python-pandas
%package xml
Summary: The python pandas[xml] extra
Requires: python-lxml >= 4.9.2
Requires: python-pandas = %{version}
BuildArch: noarch
%description xml
This package provides the [xml] extra for python-pandas
%package plot
Summary: The python pandas[plot] extra
Requires: python-matplotlib >= 3.6.3
Requires: python-pandas = %{version}
BuildArch: noarch
%description plot
This package provides the [plot] extra for python-pandas
%package output_formatting
Summary: The python pandas[output_formatting] extra
Requires: python-Jinja2 >= 3.1.2
Requires: python-pandas = %{version}
Requires: python-tabulate >= 0.9.0
BuildArch: noarch
%description output_formatting
This package provides the [output_formatting] extra for python-pandas
%package clipboard
Summary: The python pandas[clipboard] extra
Requires: python-PyQt5 >= 5.15.9
Requires: python-QtPy >= 2.3.0
Requires: python-pandas = %{version}
BuildArch: noarch
%description clipboard
This package provides the [clipboard] extra for python-pandas
%package compression
Summary: The python pandas[compression] extra
Requires: python-pandas = %{version}
Requires: python-zstandard >= 0.19.0
BuildArch: noarch
%description compression
This package provides the [compression] extra for python-pandas
%package consortium-standard
Summary: The python pandas[consortium-standard] extra
Requires: python-dataframe-api-compat >= 0.1.7
Requires: python-pandas = %{version}
BuildArch: noarch
%description consortium-standard
This package provides the [consortium-standard] extra for python-pandas
%package all
Summary: The python pandas[all] extra
Requires: python-Bottleneck >= 1.3.6
Requires: python-Jinja2 >= 3.1.2
Requires: python-PyMySQL >= 1.0.2
Requires: python-PyQt5 >= 5.15.9
Requires: python-QtPy >= 2.3.0
Requires: python-SQLAlchemy >= 2
Requires: python-XlsxWriter >= 3.0.5
Requires: python-beautifulsoup4 >= 4.11.2
%{?with_adbc:Requires: python-adbc-driver-postgresql >= 0.8}
%{?with_adbc:Requires: python-adbc-driver-sqlite >= 0.8}
Requires: python-blosc
%{?with_calamine:Requires: python-calamine >= 0.1.7}
%{?with_pyarrow:Requires: python-fastparquet >= 2022.12}
Requires: python-fsspec >= 2022.11
Requires: python-gcsfs >= 2022.11
Requires: python-html5lib >= 1.1
Requires: python-hypothesis >= 6.46.1
Requires: python-lxml >= 4.9.2
Requires: python-matplotlib >= 3.6.3
Requires: python-numba >= 0.56.4
Requires: python-numexpr >= 2.8.4
Requires: python-odfpy >= 1.4.1
Requires: python-openpyxl >= 3.1.0
Requires: python-pandas = %{version}
Requires: python-psycopg2 >= 2.9.6
%{?with_pyarrow:Requires: python-pyarrow >= 10.0.1}
Requires: python-pyreadstat >= 1.2.0
Requires: python-pytest >= 7.3.2
Requires: python-pytest-xdist >= 2.2.0
Requires: python-scipy >= 1.10.0
Requires: python-tables >= 3.8.0
Requires: python-tabulate >= 0.9
Requires: python-xarray >= 2022.12
Requires: python-xlrd >= 2.0.1
Requires: python-zstandard >= 0.19.0
%{?with_aws:Requires: python-s3fs >= 2022.05.0}
%{?with_gcp:Requires: python-pandas-gbq >= 0.19}
%{?with_xslb:Requires: python-pyxlsb >= 1.0.10}
%{?with_consortium_standard: Requires: python-dataframe-api-compat >= 0.1.7}
BuildArch: noarch
%description all
This package provides most the [all] extra for python-pandas
Some requirements defined in the PyPI package are left out
because they are not available as openSUSE RPM packages:
* pandas-gbq
* pyxlsb
* s3fs
* dataframe-api-compat
* adbc-driver-postgresql
* adbc-driver-sqlite
* calamine
You can install them directly through `pip%{python_bin_suffix} install --user`, if needed.
%prep
# ATTENTION: unpack and generate _version_meson.py before any patches and modifications for a clean version
%setup -q -n pandas-%{version}
%if !%{with test}
# use the last one from the buildset: need versioneer installed
%python_expand genpython="%__$python"
${genpython} generate_version.py -o _version_meson.py
sed -i "s|'generate_version.py',|'${genpython}', 'generate_version.py',|" meson.build
# don't require the PyPI data only tzdata package, we use the timezone RPM package
sed -i '/dependencies = \[/,/\]/ {/tzdata.*>=/d}' pyproject.toml
%endif
%autopatch -p1
%build
%if !%{with test}
%{?gccver:export CXX=g++-%{gccver}}
%{?gccver:export CC=gcc-%{gccver}}
export CFLAGS="%{optflags} -fno-strict-aliasing"
%pyproject_wheel
%endif
%install
%if !%{with test}
%pyproject_install
%{python_expand #
find %{buildroot}%{$python_sitearch}/pandas/_libs -name '*.[ch]' -delete
sed -i -e '/.[ch],/d' %{buildroot}%{$python_sitearch}/pandas-%{version}.dist-info/RECORD
%fdupes %{buildroot}%{$python_sitearch}
}
%else
# Copy the installed package back into the source tree
# This is equivalent to build and install editable (pip install -e .), and the only way
# to have a passing test suite due to how the test collection works in pytest >= 7.
# Only works for separate python flavors in multibuild.
%python_expand cp -rf %{$python_sitearch}/pandas/* pandas/
%endif
%check
%if %{with test}
export LANG=en_US.UTF-8
export LC_ALL=en_US.UTF-8
export PYTHONDONTWRITEBYTECODE=1
# Workaround for pytest-xdist flaky collection order
# https://github.com/pytest-dev/pytest/issues/920
# https://github.com/pytest-dev/pytest/issues/1075
export PYTHONHASHSEED=1
# no network connection on obs
SKIP_MARKERS="network"
# clipboard not set up properly in build service without window manager
SKIP_MARKERS+=" or clipboard"
# skip tests which upstream marked for -n 1 only.
SKIP_MARKERS+=" or single_cpu"
# pytest-xdist worker crash
SKIP_TESTS="test_pivot_number_of_levels_larger_than_int32"
# no locally running database server
SKIP_TESTS+=" or psycopg2_engine or psycopg2_conn or pymysql_engine or pymysql_conn"
SKIP_TESTS+=" or test_psycopg2_schema_support"
SKIP_TESTS+=" or test_self_join_date_columns"
# expects a dirty git revision from git repo
SKIP_TESTS+=" or test_git_version"
%if "%{flavor}" == "test-py312"
# https://github.com/pandas-dev/pandas/pull/57391, proposed change is not necessarily the right one
SKIP_TESTS+=" or (test_scalar_unary and numexpr-pandas)"
%endif
# Numpy2: unexpected 'np.str_(...)' in error message
SKIP_TESTS+=" or test_group_subplot_invalid_column_name"
%ifarch %{ix86} %{arm32}
# https://github.com/pandas-dev/pandas/issues/31856
SKIP_TESTS+=" or test_maybe_promote_int_with_int"
# rounding error
SKIP_TESTS+=" or (test_rolling_quantile_interpolation_options and data1 and linear and 0.1)"
# overflow
SKIP_TESTS+=" or test_large_string_pyarrow"
SKIP_TESTS+=" or test_pandas_nullable_with_missing_values"
SKIP_TESTS+=" or test_pandas_nullable_without_missing_values"
SKIP_TESTS+=" or (test_to_datetime and TestOrigin and test_epoch)"
SKIP_TESTS+=" or test_td_mul_numeric_ndarray_0d"
SKIP_TESTS+=" or test_get_indexer_non_unique_wrong_dtype"
# pyarrow read-only errors
SKIP_TESTS+=" or test_left_join_multi_index"
SKIP_TESTS+=" or test_join_on_single_col_dup_on_right"
# dtype mismatch
SKIP_TESTS+=" or test_frame_setitem_dask_array_into_new_col"
SKIP_TESTS+=" or test_get_indexer_arrow_dictionary_target"
# numba formats not supported on 32-bit
SKIP_TESTS+=" or numba"
%endif
%ifarch %{ix86}
# overflows on i586
SKIP_TESTS+=" or test_encode_non_c_locale"
# intp != int32 (still numpy 1)?
SKIP_TESTS+=" or test_ensure_platform_int"
# fails on i586 (was gcc10-skip-one-test.patch)
SKIP_TESTS+=" or test_merge_on_ints_floats_warning"
%endif
%ifarch ppc64 s390x
# big endian type issues
SKIP_TESTS+=" or test_astype"
SKIP_TESTS+=" or test_to_numpy_string"
SKIP_TESTS+=" or (test_construction and test_to_numpy)"
SKIP_TESTS+=" or test_to_records_index_name"
SKIP_TESTS+=" or test_to_records_dtype"
SKIP_TESTS+=" or test_to_records_dict_like"
SKIP_TESTS+=" or (test_c_parser_only and test_unsupported_dtype)"
SKIP_TESTS+=" or test_td_mul_td64_ndarray_invalid"
%endif
%ifnarch x86_64
# type and numeric precision issues, partially reported for arm and marked xfail upstream but not for e.g. ppc
SKIP_TESTS+=" or (test_astype and test_subtype_integer_errors)"
SKIP_TESTS+=" or (test_to_numeric and test_downcast_nullable_numeric and data12-UInt64-signed-UInt64)"
SKIP_TESTS+=" or (test_rolling and test_rolling_var_numerical_issues)"
SKIP_TESTS+=" or (test_groupby and test_groupby_numerical_stability_sum_mean)"
SKIP_TESTS+=" or (test_groupby and test_groupby_numerical_stability_cumsum)"
SKIP_TESTS+=" or (test_c_parser_only and test_float_precision_options)"
# run the slow tests only on x86_64
SKIP_MARKERS+=" or slow or db"
%endif
# The test collection consumes a lot of memory per worker. This sets %%jobs.
%limit_build -m 3072
%{python_expand $python -c 'import pandas; print(pandas.__path__); print(pandas.show_versions())'
# cache: can't just say no cacheprovider, because one test checks for the --lf option of pytest-cache
xvfb-run pytest-%{$python_bin_suffix} -v -n %{jobs} -rsfE --dist=loadfile \
-o cache_dir=$PWD/.pytest_cache --cache-clear \
-m "not (${SKIP_MARKERS})" \
-k "not (${SKIP_TESTS})" \
pandas
}
%endif
%if !%{with test}
%files %{python_files}
%license LICENSE
%doc README.md
%{python_sitearch}/pandas/
%{python_sitearch}/pandas-%{version}.dist-info
%files %{python_files test}
%license LICENSE
%doc README.md
%if !%{with ringdisabled}
%files %{python_files pyarrow}
%license LICENSE
%doc README.md
%files %{python_files performance}
%license LICENSE
%doc README.md
%if 0%{python_version_nodots} >= 310
%files %{python_files computation}
%license LICENSE
%doc README.md
%endif
%files %{python_files fss}
%license LICENSE
%doc README.md
%if %{with aws}
%files %{python_files aws}
%license LICENSE
%doc README.md
%endif
%if %{with gcp}
%files %{python_files gcp}
%license LICENSE
%doc README.md
%endif
%files %{python_files excel}
%license LICENSE
%doc README.md
%if %{with pyarrow}
%files %{python_files parquet}
%license LICENSE
%doc README.md
%endif
%if %{with pyarrow}
%files %{python_files feather}
%license LICENSE
%doc README.md
%endif
%files %{python_files hdf5}
%license LICENSE
%doc README.md
%files %{python_files spss}
%license LICENSE
%doc README.md
%files %{python_files postgresql}
%license LICENSE
%doc README.md
%files %{python_files mysql}
%license LICENSE
%doc README.md
%files %{python_files sql-other}
%license LICENSE
%doc README.md
%files %{python_files html}
%license LICENSE
%doc README.md
%files %{python_files xml}
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%doc README.md
%files %{python_files plot}
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%doc README.md
%files %{python_files output_formatting}
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%doc README.md
%files %{python_files clipboard}
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%files %{python_files compression}
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%if %{with consortium_standard}
%files %{python_files consortium-standard}
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%endif
%files %{python_files all}
%license LICENSE
%doc README.md
%endif
%endif
%changelog
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