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Accepting request 967137 from home:bnavigator:branches:devel:languages:python:numeric

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- Update to version 1.4.2
- Copy back the installed package into the source tree
  * mimics upstreams test setup of an editable install
  * avoids conftest.py collection errors with pytest 7

OBS-URL: https://build.opensuse.org/request/show/967137
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pandas?expand=0&rev=70
This commit is contained in:
Markéta Machová
2022-04-06 05:42:27 +00:00
committed by Git OBS Bridge
parent eb6a616f64
commit efb32b793f
4 changed files with 70 additions and 31 deletions
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56
python-pandas.spec
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@@ -42,16 +42,16 @@
%{?!python_module:%define python_module() python3-%{**}}
%define skip_python2 1
Name: python-pandas%{psuffix}
Version: 1.4.1
Version: 1.4.2
Release: 0
Summary: Python data structures for data analysis, time series, and statistics
License: BSD-3-Clause
Group: Development/Libraries/Python
URL: https://pandas.pydata.org/
Source0: https://files.pythonhosted.org/packages/source/p/pandas/pandas-%{version}.tar.gz
BuildRequires: %{python_module Cython >= 0.29.21}
BuildRequires: %{python_module Cython >= 0.29.24}
BuildRequires: %{python_module Jinja2}
BuildRequires: %{python_module devel >= 3.7.1}
BuildRequires: %{python_module devel >= 3.8}
BuildRequires: %{python_module numpy-devel >= 1.18.5}
BuildRequires: %{python_module python-dateutil >= 2.8.1}
BuildRequires: %{python_module pytz >= 2020.1}
@@ -107,6 +107,7 @@ BuildRequires: %{python_module numexpr >= 2.7.1}
BuildRequires: %{python_module openpyxl >= 3.0.3}
BuildRequires: %{python_module pandas = %{version}}
BuildRequires: %{python_module pytest >= 6.0}
BuildRequires: %{python_module pytest-asyncio >= 0.17}
BuildRequires: %{python_module pytest-mock}
BuildRequires: %{python_module pytest-xdist}
BuildRequires: %{python_module scipy >= 1.4.1}
@@ -124,17 +125,8 @@ heterogeneous) and time series data. It is a high-level building
block for doing data analysis in Python.
%prep
%if !%{with test}
%setup -q -n pandas-%{version}
%else
%setup -q -c -n pandas-%{version} -T
cd ..
# unpack only the files we need for testing
tar xf %{SOURCE0} \
pandas-%{version}/pyproject.toml \
pandas-%{version}/pandas/io/formats/templates/html.tpl
sed -i 's/--strict-data-files//' pandas-%{version}/pyproject.toml
%endif
sed -i 's/--strict-data-files//' pyproject.toml
%build
%if !%{with test}
@@ -151,6 +143,12 @@ rm -r %{buildroot}%{$python_sitearch}/pandas/_libs/src
rm -r %{buildroot}%{$python_sitearch}/pandas/_libs/tslibs/src
%fdupes %{buildroot}%{$python_sitearch}
}
%else
# Copy the installed package back into the source tree
# This is equivalent to build and install editable (pip install -e .), and the only way
# to have a passing test suite due to how the test collection works in pytest >= 7.
# Only works for separate python flavors in multibuild.
%python_expand cp -rf %{$python_sitearch}/pandas/* pandas/
%endif
%check
@@ -162,14 +160,20 @@ export PYTHONDONTWRITEBYTECODE=1
# https://github.com/pytest-dev/pytest/issues/920
# https://github.com/pytest-dev/pytest/issues/1075
export PYTHONHASHSEED=1
# tries to compile stuff in system sitearch
SKIP_TESTS+=" or test_oo_optimizable"
# dtypes not as expected
# https://github.com/pandas-dev/pandas/issues/39096
# https://github.com/pandas-dev/pandas/issues/36579
SKIP_TESTS+=" or (test_misc and test_memory_usage and series and empty and index)"
SKIP_TESTS="(test_misc and test_memory_usage and series and empty and index)"
# pytest-xdist worker crash
SKIP_TESTS+=" or test_pivot_number_of_levels_larger_than_int32"
# --skip-* arguments: Upstream's custom way to skip marked tests. These do not use pytest.mark.
SKIP_ARGS="--skip-network"
# clipboard not set up properly in build service without window manager
SKIP_MARKERS="clipboard"
# skip tests which upstream marked for -n 1 only.
SKIP_MARKERS+=" or single_cpu"
if [ $(getconf LONG_BIT) -eq 32 ]; then
# https://github.com/pandas-dev/pandas/issues/31856
SKIP_TESTS+=" or test_maybe_promote_int_with_int"
@@ -202,24 +206,20 @@ SKIP_TESTS+=" or (test_groupby and test_groupby_numerical_stability_sum_mean)"
SKIP_TESTS+=" or (test_groupby and test_groupby_numerical_stability_cumsum)"
SKIP_TESTS+=" or (test_c_parser_only and test_float_precision_options)"
# run the slow tests only on x86_64
%define test_fast --skip-slow --skip-db
SKIP_ARGS+=" --skip-slow --skip-db"
%endif
# The test collection consumes a lot of memory per worker. This sets %%jobs.
%limit_build -m 2048
%{python_expand $python -c 'import pandas; print(pandas.__path__); print(pandas.show_versions())'
# -c pyproject.toml: get the marker declarations
# cache: can't just say no cacheprovider, because one test checks for the --lf option of pytest-cache
# --skip-* arguments: Upstreams custom way to skip marked tests. These do not use pytest.mark.
# clipboard marker: not set up properly in build service
# need to specify test path directly instead of --pyargs pandas in order
# to find all conftest.py files https://github.com/pytest-dev/pytest/issues/1596
xvfb-run pytest-%{$python_bin_suffix} -v -n %{jobs} \
-c pyproject.toml \
xvfb-run pytest-%{$python_bin_suffix} -v -n %{jobs} --dist=loadfile \
-o cache_dir=$PWD/.pytest_cache --cache-clear \
--skip-network %{?test_fast} \
-m "not clipboard" \
-k "not (${SKIP_TESTS:4})" \
%{$python_sitearch}/pandas
${SKIP_ARGS} \
-m "not (${SKIP_MARKERS})" \
-k "not (${SKIP_TESTS})" \
pandas
}
%endif