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Code Pull Requests Activity

Accepting request 1178183 from home:bnavigator:branches:devel:languages:python:numeric

Browse Source 
- Build from github archive with obs-service-node_modules and
  local-npm-registry
- Add plotly-pr4622-np2.patch gh#plotly/plotly.py#4622

OBS-URL: https://build.opensuse.org/request/show/1178183
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-plotly?expand=0&rev=65
This commit is contained in:
Matej Cepl 2024-06-03 16:21:01 +00:00 committed by Git OBS Bridge
parent cf0e4013d1
commit a8b1c5659d
8 changed files with 12349 additions and 12 deletions
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11628
package-lock.json generated Normal file
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File diff suppressed because it is too large Load Diff

3
plotly-5.22.0.tar.gz
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@ -1,3 +0,0 @@
version https://git-lfs.github.com/spec/v1
oid sha256:859fdadbd86b5770ae2466e542b761b247d1c6b49daed765b95bb8c7063e7469
size 8115712

91
plotly-pr4622-np2.patch Normal file
View File

@ -0,0 +1,91 @@
From 0199582127111c453db70a0133db8c64baca7c40 Mon Sep 17 00:00:00 2001
From: Ben Greiner <code@bnavigator.de>
Date: Sun, 2 Jun 2024 16:43:06 +0200
Subject: [PATCH 1/3] Remove np.nan and np.inf aliases no longer present in
numpy2
---
.../tests/test_optional/test_utils/test_utils.py | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/packages/python/plotly/plotly/tests/test_optional/test_utils/test_utils.py b/packages/python/plotly/plotly/tests/test_optional/test_utils/test_utils.py
index cf32e1bdf..d7d982e63 100644
--- a/packages/python/plotly/plotly/tests/test_optional/test_utils/test_utils.py
+++ b/packages/python/plotly/plotly/tests/test_optional/test_utils/test_utils.py
@@ -34,7 +34,7 @@ if matplotlylib:
## JSON encoding
numeric_list = [1, 2, 3]
-np_list = np.array([1, 2, 3, np.NaN, np.NAN, np.Inf, dt(2014, 1, 5)])
+np_list = np.array([1, 2, 3, np.nan, np.inf, dt(2014, 1, 5)])
mixed_list = [
1,
"A",
@@ -45,7 +45,7 @@ mixed_list = [
dt_list = [dt(2014, 1, 5), dt(2014, 1, 5, 1, 1, 1), dt(2014, 1, 5, 1, 1, 1, 1)]
df = pd.DataFrame(
- columns=["col 1"], data=[1, 2, 3, dt(2014, 1, 5), pd.NaT, np.NaN, np.Inf]
+ columns=["col 1"], data=[1, 2, 3, dt(2014, 1, 5), pd.NaT, np.nan, np.inf]
)
rng = pd.date_range("1/1/2011", periods=2, freq="H")
@@ -184,7 +184,7 @@ class TestJSONEncoder(TestCase):
assert (
js1 == '{"type": "scatter3d", "x": [1, 2, 3], '
- '"y": [1, 2, 3, null, null, null, "2014-01-05T00:00:00"], '
+ '"y": [1, 2, 3, null, null, "2014-01-05T00:00:00"], '
'"z": [1, "A", "2014-01-05T00:00:00", '
'"2014-01-05T01:01:01", "2014-01-05T01:01:01.000001"]}'
)
@@ -195,9 +195,9 @@ class TestJSONEncoder(TestCase):
_json.dumps(figure, cls=utils.PlotlyJSONEncoder, sort_keys=True)
# Test data wasn't mutated
- np_array = np.array([1, 2, 3, np.NaN, np.NAN, np.Inf, dt(2014, 1, 5)])
+ np_array = np.array([1, 2, 3, np.nan, np.inf, dt(2014, 1, 5)])
for k in range(len(np_array)):
- if k in [3, 4]:
+ if k == 3:
# check NaN
assert np.isnan(np_list[k]) and np.isnan(np_array[k])
else:
@@ -237,7 +237,7 @@ class TestJSONEncoder(TestCase):
# Test that data wasn't mutated
assert_series_equal(
df["col 1"],
- pd.Series([1, 2, 3, dt(2014, 1, 5), pd.NaT, np.NaN, np.Inf], name="col 1"),
+ pd.Series([1, 2, 3, dt(2014, 1, 5), pd.NaT, np.nan, np.inf], name="col 1"),
)
j2 = _json.dumps(df.index, cls=utils.PlotlyJSONEncoder)
--
2.45.1
From f88554113e8cf55a1d756c3f0d33b92a891d0475 Mon Sep 17 00:00:00 2001
From: Ben Greiner <code@bnavigator.de>
Date: Sun, 2 Jun 2024 16:48:34 +0200
Subject: [PATCH 2/3] Avoid putting 255 into int8 due to new numpy 2 type
promotion rules
---
.../plotly/plotly/tests/test_optional/test_px/test_imshow.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/packages/python/plotly/plotly/tests/test_optional/test_px/test_imshow.py b/packages/python/plotly/plotly/tests/test_optional/test_px/test_imshow.py
index c2e863c84..d8f9ad98c 100644
--- a/packages/python/plotly/plotly/tests/test_optional/test_px/test_imshow.py
+++ b/packages/python/plotly/plotly/tests/test_optional/test_px/test_imshow.py
@@ -341,7 +341,7 @@ def test_imshow_source_dtype_zmax(dtype, contrast_rescaling):
assert (
np.abs(
np.max(decode_image_string(fig.data[0].source))
- - 255 * img.max() / np.iinfo(dtype).max
+ - np.int64(255) * img.max() / np.iinfo(dtype).max
)
< 1
)
--
2.45.1

7
python-plotly.changes
View File

@ -1,3 +1,10 @@
-------------------------------------------------------------------
Sun Jun 2 14:39:59 UTC 2024 - Ben Greiner <code@bnavigator.de>
- Build from github archive with obs-service-node_modules and
local-npm-registry
- Add plotly-pr4622-np2.patch gh#plotly/plotly.py#4622
-------------------------------------------------------------------
Thu May 23 18:43:23 UTC 2024 - Ben Greiner <code@bnavigator.de>

29
python-plotly.spec
View File

@ -22,11 +22,17 @@ Release: 0
Summary: Library for collaborative, interactive, publication-quality graphs
License: MIT
URL: https://github.com/plotly/plotly.py
# Get the PyPI archive for the bundled JS files
Source: https://files.pythonhosted.org/packages/source/p/plotly/plotly-%{version}.tar.gz
# Additionally use the GitHub archive for the test suite
Source1: https://github.com/plotly/plotly.py/archive/refs/tags/v%{version}.tar.gz#/plotly.py-%{version}-gh.tar.gz
# Use the GitHub archive for the test suite
Source0: https://github.com/plotly/plotly.py/archive/refs/tags/v%{version}.tar.gz#/plotly.py-%{version}-gh.tar.gz
# package-lock.json file generated with command in packages/javascript/jupyterlab-plotly:
# npm install --package-lock-only --legacy-peer-deps --ignore-scripts
Source10: package-lock.json
# node_modules generated using "osc service mr" with the https://github.com/openSUSE/obs-service-node_modules
Source11: node_modules.spec.inc
%include %{_sourcedir}/node_modules.spec.inc
Source100: python-plotly-rpmlintrc
# PATCH-FIX-UPSTREAM plotly-pr4622-np2.patch gh#plotly/plotly.py#4622
Patch0: plotly-pr4622-np2.patch
BuildRequires: %{python_module base >= 3.6}
BuildRequires: %{python_module jupyterlab >= 3}
BuildRequires: %{python_module notebook >= 5.3}
@ -37,6 +43,7 @@ BuildRequires: %{python_module tenacity >= 6.2.0}
BuildRequires: %{python_module wheel}
BuildRequires: fdupes
BuildRequires: jupyter-rpm-macros
BuildRequires: local-npm-registry
BuildRequires: python-rpm-macros
Requires: python-packaging
Requires: python-tenacity >= 6.2.0
@ -115,7 +122,13 @@ This package provides the flavorless configuration for the
Jupyterlab and Notebook integration and widgets.
%prep
%setup -q -n plotly-%{version} -b 1
%autosetup -p4 -n plotly.py-%{version}/packages/python/plotly
pushd ../../javascript/jupyterlab-plotly/
rm package-lock.json
# allow builder v4
sed -i '/jupyterlab.builder/ s/\^3/>=3/' package.json
local-npm-registry %{_sourcedir} install --include=dev --include=peer
popd
# remove script interpreter line in non-executable script
sed -i '1{/env python/ d}' _plotly_utils/png.py
# homogenize mtime of all __init__.py files for deduplicated compile cache consistency
@ -130,9 +143,6 @@ find . -name __init__.py -exec touch -m -r plotly/__init__.py '{}' ';'
%fdupes %{buildroot}%{_jupyter_prefix}
%check
# No test suite in the PyPI package, which is required for the bundled JS files, we are using the GitHub repo tree now.
# Important: make sure you patched the sources the same as the github repo
pushd ../plotly.py-%{version}/packages/python/plotly
# API parameter mismatch
donttest="test_described_subscript_error_on_type_error"
%pytest plotly/tests/test_core -k "not ($donttest)"
@ -141,10 +151,11 @@ donttest="test_kaleido"
donttest="$donttest or test_px_input and (vaex or polars)"
# API parameter mismatches and precision errors
donttest="$donttest or test_matplotlylib"
# fails to plot with numpy 2 but cannot reproduce failure interactively
donttest="$donttest or test_masked_constants_example"
# flaky timing error
donttest="$donttest or test_fast_track_finite_arrays"
%pytest plotly/tests/test_optional -k "not ($donttest)"
popd
%files %{python_files}
%license LICENSE.txt