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Accepting request 1005690 from home:jayvdb:branches:devel:languages:python

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- Skip a lot of tests, mostly due to missing test data, but there
  are over 1900 still passing.
- Update to v2.3.0
  * See https://github.com/pydicom/pydicom/tree/master/doc/release_notes

OBS-URL: https://build.opensuse.org/request/show/1005690
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python/python-pydicom?expand=0&rev=21
This commit is contained in:
Dirk Mueller 2022-09-24 10:21:18 +00:00 committed by Git OBS Bridge
parent 0ac4534dfb
commit b14ea9eb46
4 changed files with 64 additions and 8 deletions
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pydicom-1.4.2.tar.gz
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version https://git-lfs.github.com/spec/v1
oid sha256:9488495a9f3e202d1219f7cb165aee0de31efd512d938c0226d34147ce860391
size 35237997

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pydicom-2.3.0.tar.gz Normal file
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version https://git-lfs.github.com/spec/v1
oid sha256:dbfa081c9ad9ac8ff8a8efbd71784104db9eecf02fd775f7d7773f2183f89386
size 2164552

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python-pydicom.changes
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-------------------------------------------------------------------
Sat Sep 24 02:04:40 UTC 2022 - John Vandenberg <jayvdb@gmail.com>
- Skip a lot of tests, mostly due to missing test data, but there
are over 1900 still passing.
- Update to v2.3.0
* See https://github.com/pydicom/pydicom/tree/master/doc/release_notes
-------------------------------------------------------------------
Fri Dec 10 07:41:02 UTC 2021 - pgajdos@suse.com

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python-pydicom.spec
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#
# spec file for package python-pydicom
#
# Copyright (c) 2021 SUSE LLC
# Copyright (c) 2022 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@ -19,21 +19,29 @@
%{?!python_module:%define python_module() python-%{**} python3-%{**}}
%define oldpython python
Name: python-pydicom
Version: 1.4.2
Version: 2.3.0
Release: 0
Summary: Pure python package for DICOM medical file reading and writing
License: MIT
URL: https://github.com/darcymason/pydicom
Source: https://files.pythonhosted.org/packages/source/p/pydicom/pydicom-%{version}.tar.gz
BuildRequires: %{python_module pytest}
BuildRequires: %{python_module setuptools}
BuildRequires: fdupes
BuildRequires: python-rpm-macros
# SECTION test requirements
BuildRequires: %{python_module numpy}
BuildRequires: %{python_module Pillow}
BuildRequires: %{python_module pytest}
BuildRequires: %{python_module requests}
BuildRequires: python3-gdcm
# /SECTION
BuildArch: noarch
%ifpython2
Obsoletes: %{oldpython}-dicom < %{version}
Provides: %{oldpython}-dicom = %{version}
%endif
Requires(post): update-alternatives
Requires(postun): update-alternatives
%python_subpackages
%description
@ -53,14 +61,54 @@ and radiotherapy objects.
%install
%python_install
%python_clone -a %{buildroot}%{_bindir}/pydicom
%python_expand rm -r %{buildroot}%{$python_sitelib}/pydicom/{benchmarks,tests,data/test_files}
%python_expand %fdupes %{buildroot}%{$python_sitelib}
%check
export LANG=en_US.UTF-8
%pytest pydicom/tests
# Many test modules and individual tests fail due to test data not included in sdist
# And requires https://github.com/pydicom/pydicom-data , which hasnt been
# packaged yet. c.f. https://github.com/pydicom/pydicom-data/issues/9
skips="test_fetch_data_files or test_reading_ds_with_known_tags_with_UN_VR or test_empty_bot_multi_fragments_per_frame"
skips="$skips or test_convert_rgb_from_implicit_to_explicit_vr or test_empty_bot_too_few_fragments or test_encapsulate"
skips="$skips or test_sequence_with_implicit_vr or test_rgb_ybr_rgb_single_frame or test_rgb_ybr_rgb_multi_frame or test_frame_by_frame"
skips="$skips or test_specific_tags_with_unknown_length_tag or test_tag_with_unknown_length_tag_too_short or test_planar_config"
skips="$skips or test_correct_ambiguous_vr_compressed or test_write_removes_grouplength or test_raw_elements_preserved_explicit_vr"
skips="$skips or test_cycle_u8_1s_1f or test_encoders_gdcm or test_unsupported_syntax_raises or test_can_access_unsupported_dataset"
skips="$skips or TestDatasetOverlayArray or TestGDCM_JPEG_LS_no_gdcm or TestGDCM_JPEG2000_no_gdcm or TestGDCM_JPEGlossy_no_gdcm"
skips="$skips or TestGDCM_JPEGlossless_no_gdcm or TestEncodeFrame or TestEncodeSegment or TestRLEEncodeFrame or TestNumpy_ModalityLUT"
skips="$skips or TestNumpy_PaletteColor or TestNumpy_ApplyWindowing or TestNumpy_ApplyVOI or (TestNumpy_PackBits and test_functional)"
skips="$skips or TestNumpy_NumpyHandler or TestNumpy_GetOverlayArray or TestNumpy_NoRLEHandler or TestNumpy_RLEHandler"
skips="$skips or TestPillowHandler_JPEG2K or TestPillowHandler_JPEG"
# Failures only on ppc64
skips="$skips or test_invalid_arr_dtype_raises or TestHandlerGenerateMultiplex or TestHandlerMultiplexArray"
# Failures only on i586
skips="$skips or test_write_file_id or test_file_id"
# The ignores cause failure during test collection
%{pytest -rs pydicom/tests \
--ignore pydicom/tests/test_JPEG_LS_transfer_syntax.py \
--ignore pydicom/tests/test_dataset.py \
--ignore pydicom/tests/test_gdcm_pixel_data.py \
--ignore pydicom/tests/test_jpeg_ls_pixel_data.py \
--ignore pydicom/tests/test_JPEG_LS_transfer_syntax.py \
--ignore pydicom/tests/test_jpeg_ls_pixel_data.py \
--ignore pydicom/tests/test_numpy_pixel_data.py \
-k "not ($skips)"
}
%post
%python_install_alternative pydicom
%postun
%python_uninstall_alternative pydicom
%files %{python_files}
%doc README.md
%license LICENSE
%{python_sitelib}/*
%python_alternative %{_bindir}/pydicom
%{python_sitelib}/pydicom*
%changelog