forked from pool/python-scikit-sparse
- Update to 0.4.15:
* add publishing with a trusted publisher * Bump up numpy requirement * Autofind homebrew installation path * add publishing with a trusted publisher * Bump up numpy requirement * Autofind homebrew installation path - Drop patch support-scipy-1.14.patch, included upstream. - Move test_data under the tests directory and run tests there. OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-scikit-sparse?expand=0&rev=19
This commit is contained in:
Steve Kowalik
Git OBS Bridge
commit
d417069b60
23
.gitattributes
vendored
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23
.gitattributes
vendored
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## Default LFS
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*.7z filter=lfs diff=lfs merge=lfs -text
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*.bsp filter=lfs diff=lfs merge=lfs -text
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*.bz2 filter=lfs diff=lfs merge=lfs -text
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*.gem filter=lfs diff=lfs merge=lfs -text
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*.gz filter=lfs diff=lfs merge=lfs -text
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*.jar filter=lfs diff=lfs merge=lfs -text
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*.lzma filter=lfs diff=lfs merge=lfs -text
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*.oxt filter=lfs diff=lfs merge=lfs -text
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*.pdf filter=lfs diff=lfs merge=lfs -text
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*.png filter=lfs diff=lfs merge=lfs -text
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*.rpm filter=lfs diff=lfs merge=lfs -text
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*.tbz filter=lfs diff=lfs merge=lfs -text
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*.tbz2 filter=lfs diff=lfs merge=lfs -text
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*.tgz filter=lfs diff=lfs merge=lfs -text
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*.ttf filter=lfs diff=lfs merge=lfs -text
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*.txz filter=lfs diff=lfs merge=lfs -text
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*.whl filter=lfs diff=lfs merge=lfs -text
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*.xz filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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1
.gitignore
vendored
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1
.gitignore
vendored
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@ -0,0 +1 @@
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.osc
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93
python-scikit-sparse.changes
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93
python-scikit-sparse.changes
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@ -0,0 +1,93 @@
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-------------------------------------------------------------------
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Mon Aug 5 02:43:30 UTC 2024 - Steve Kowalik <steven.kowalik@suse.com>
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- Update to 0.4.15:
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* add publishing with a trusted publisher
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* Bump up numpy requirement
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* Autofind homebrew installation path
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* add publishing with a trusted publisher
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* Bump up numpy requirement
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* Autofind homebrew installation path
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- Drop patch support-scipy-1.14.patch, included upstream.
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- Move test_data under the tests directory and run tests there.
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-------------------------------------------------------------------
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Thu Jul 25 06:03:00 UTC 2024 - Steve Kowalik <steven.kowalik@suse.com>
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- Update to 0.4.13:
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* Fix breaking changes in isspmatrix of scipy >=1.11.0, discontinuing
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compatibility with csc_array
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* remove numpy build restrictions
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- Drop patches scikit-sparse-py312.patch, scipy111.patch:
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* Included upstream.
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- Add patch support-scipy-1.14.patch:
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* Do not call a now removed method in scipy.
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-------------------------------------------------------------------
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Sun Feb 18 15:19:40 UTC 2024 - Ben Greiner <code@bnavigator.de>
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- Add scikit-sparse-py312.patch gh#scikit-sparse/scikit-sparse#105
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-------------------------------------------------------------------
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Fri Sep 8 16:56:21 UTC 2023 - Matej Cepl <mcepl@suse.com>
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- Clean up the SPEC file.
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- Convert from python_{build,install} to
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pyproject_{wheel,install} macros.
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-------------------------------------------------------------------
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Thu Aug 31 12:37:47 UTC 2023 - Markéta Machová <mmachova@suse.com>
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- Update to 0.4.12
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* Allow suitesparse include/library paths to be passed in to
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pip install through environment variables.
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* Added support for python 3.11
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* Fix compilation with Cython>=3.0.0
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- Add upstream scipy111.patch
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-------------------------------------------------------------------
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Sat Apr 24 16:29:24 UTC 2021 - Ben Greiner <code@bnavigator.de>
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- Update to 0.4.5
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* Use PEP-517 style build-system so numpy and cython are no longer
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needed prior to installation (openSUSE: we still use
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setuptools here)
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* Added support for python 3.9
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- Remove nose -- gh#scikit-sparse/pull#66
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-------------------------------------------------------------------
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Fri Feb 12 14:12:27 UTC 2021 - Dirk Müller <dmueller@suse.com>
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- skip python 36 build
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-------------------------------------------------------------------
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Wed Nov 7 11:42:47 CET 2018 - mcepl@suse.com
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- Update to 0.4.4:
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* Bug in solve with dense array, where base of result is not
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set correctly, fixed.
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* Supported versions updated to: - Python: 3.7, 3.6 - NumPy:
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1.15, 1.14, 1.13 - SciPy: 1.1, 1.0, 0.19 - SuiteSparse: 5.2
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-------------------------------------------------------------------
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Wed Aug 8 16:38:21 UTC 2018 - jengelh@inai.de
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- Trim irrelevant parts from description.
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-------------------------------------------------------------------
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Thu May 24 17:42:59 UTC 2018 - toddrme2178@gmail.com
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- Add license file
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- spec file cleanups
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-------------------------------------------------------------------
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Thu Apr 19 16:51:57 UTC 2018 - toddrme2178@gmail.com
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- Update to version 0.4.3
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* The method solve_L can now also use the L matrix of the LL' decomposition.
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* Supported versions updated to Python 3.6, 3.5 and 2.7, NumPy 1.14 and 1.13 and SciPy 1.0 and 0.19.
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-------------------------------------------------------------------
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Thu May 25 16:14:07 UTC 2017 - toddrme2178@gmail.com
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- Initial version
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78
python-scikit-sparse.spec
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78
python-scikit-sparse.spec
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#
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# spec file for package python-scikit-sparse
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#
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# Copyright (c) 2024 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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# For license file
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%define tag c94f8418b6c36c3ff9db4f87e00fc08bd51cfb4b
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Name: python-scikit-sparse
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Version: 0.4.15
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Release: 0
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Summary: Scikits sparse matrix package
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License: GPL-2.0-or-later AND LGPL-2.1-or-later
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URL: https://github.com/scikit-sparse/scikit-sparse/
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Source: https://files.pythonhosted.org/packages/source/s/scikit-sparse/scikit_sparse-%{version}.tar.gz
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BuildRequires: %{python_module Cython}
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BuildRequires: %{python_module devel}
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BuildRequires: %{python_module numpy-devel >= 1.23.3}
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BuildRequires: %{python_module pip}
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BuildRequires: %{python_module scipy >= 0.19}
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BuildRequires: %{python_module setuptools >= 18.0}
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BuildRequires: %{python_module wheel}
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BuildRequires: fdupes
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BuildRequires: python-rpm-macros
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BuildRequires: suitesparse-devel
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Requires: python-numpy >= 1.23.3
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Requires: python-scipy >= 0.18
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ExcludeArch: %{ix86}
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# SECTION test requirements
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BuildRequires: %{python_module pytest}
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# /SECTION
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%python_subpackages
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%description
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Sparse matrix tools.
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This is a sparse matrix code in Python that plays well with
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scipy.sparse, but that is somehow unsuitable for inclusion in scipy
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proper.
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There is a wrapper for the CHOLMOD library for sparse Cholesky
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decomposition.
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%prep
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%autosetup -p1 -n scikit_sparse-%{version}
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# Move the test data to tests
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mv sksparse/test_data tests
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%build
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export CFLAGS="%{optflags}"
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%pyproject_wheel
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%install
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%pyproject_install
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%python_expand %fdupes %{buildroot}%{$python_sitearch}
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%check
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%pytest_arch -ra --pyargs tests
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%files %{python_files}
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%doc README.md
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%license LICENSE.txt
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%{python_sitearch}/sksparse
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%{python_sitearch}/scikit_sparse-%{version}.dist-info
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%changelog
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3
scikit-sparse-0.4.12.tar.gz
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3
scikit-sparse-0.4.12.tar.gz
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@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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||||
oid sha256:e6502fea9ba561cfa5491eb222ed2c81c16263d8182a293950db20509c941166
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size 214115
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3
scikit-sparse-0.4.13.tar.gz
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3
scikit-sparse-0.4.13.tar.gz
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@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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||||
oid sha256:eb2190ca40e6bfa87bc81c0ee98277e173de7a7ae540d62784ed2bad7b7de25a
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size 214199
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43
scikit-sparse-py312.patch
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43
scikit-sparse-py312.patch
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@ -0,0 +1,43 @@
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From 60e672ee846e081658e4d74525ab5584358fefdb Mon Sep 17 00:00:00 2001
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From: Christian Glusa <caglusa@sandia.gov>
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Date: Sun, 26 Nov 2023 17:55:43 -0700
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Subject: [PATCH] remove numpy build restrictions, add Python 3.12 build to
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github action
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---
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.github/workflows/ci_test.yml | 2 +-
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pyproject.toml | 7 +------
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setup.py | 2 +-
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3 files changed, 3 insertions(+), 8 deletions(-)
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diff --git a/pyproject.toml b/pyproject.toml
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index 682d8bc..bf7703e 100644
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--- a/pyproject.toml
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+++ b/pyproject.toml
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@@ -25,11 +25,6 @@ requires = [
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"setuptools>=40.8.0",
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"wheel",
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"Cython>=0.22",
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- 'numpy==1.13.3; python_version=="3.6"',
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- 'numpy==1.14.5; python_version=="3.7"',
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- 'numpy==1.17.3; python_version=="3.8"',
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- 'numpy==1.19.3; python_version=="3.9"',
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- 'numpy==1.23.1; python_version=="3.10"',
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- 'numpy==1.23.5; python_version=="3.11"',
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+ 'numpy>=1.13.3; python_version>="3.6"',
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]
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build-backend = "setuptools.build_meta"
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\ No newline at end of file
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diff --git a/setup.py b/setup.py
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index f7e7af1..e7ec38b 100644
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--- a/setup.py
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+++ b/setup.py
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@@ -55,7 +55,7 @@
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setup(
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install_requires=["numpy>=1.13.3", "scipy>=0.19"],
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- python_requires=">=3.6, <3.12",
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+ python_requires=">=3.6",
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packages=find_packages(),
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package_data={
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"": ["test_data/*.mtx.gz"],
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3
scikit_sparse-0.4.15.tar.gz
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3
scikit_sparse-0.4.15.tar.gz
Normal file
@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:a0b1ef1bbe9e28e5c6d2838c63c62e094a8098d11a736771edac55ccc5f9eabe
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size 214398
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30
scipy111.patch
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30
scipy111.patch
Normal file
@ -0,0 +1,30 @@
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From 179e69774584163a7827b5ee23f1e0096d7eeec3 Mon Sep 17 00:00:00 2001
|
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From: =?UTF-8?q?Michael=20J=C3=A4ger?= <jaeger@mfk.fau.de>
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Date: Tue, 29 Aug 2023 16:15:42 +0200
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Subject: [PATCH] Fix breaking changes in isspmatrix of scipy >=1.11.0,
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discontinuing compatibility with csc_array
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Details see https://github.com/scipy/scipy/pull/18528
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---
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sksparse/cholmod.pyx | 4 ++--
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1 file changed, 2 insertions(+), 2 deletions(-)
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diff --git a/sksparse/cholmod.pyx b/sksparse/cholmod.pyx
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index 861029d..9eceb8c 100644
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--- a/sksparse/cholmod.pyx
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+++ b/sksparse/cholmod.pyx
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@@ -403,12 +403,12 @@ cdef void _error_handler(
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warnings.warn(full_msg, CholmodWarning)
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def _check_for_csc(m):
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- if not sparse.isspmatrix_csc(m):
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+ if not sparse.isspmatrix_csc(m) or isinstance(m, sparse.csc_array):
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warnings.warn("converting matrix of class %s to CSC format"
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% (m.__class__.__name__,),
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CholmodTypeConversionWarning)
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m = m.tocsc()
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- assert sparse.isspmatrix_csc(m)
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+ assert sparse.isspmatrix_csc(m) or isinstance(m, sparse.csc_array)
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return m
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cdef class Common:
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24
support-scipy-1.14.patch
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24
support-scipy-1.14.patch
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@ -0,0 +1,24 @@
|
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From ebbbaa4882eeac8fd4a2f4bf8c94c9e6b967cf54 Mon Sep 17 00:00:00 2001
|
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From: Steve Kowalik <steven@wedontsleep.org>
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Date: Thu, 25 Jul 2024 15:35:29 +1000
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Subject: [PATCH] Switch to csc_matrix.T.conjugate() from .H
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|
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With scipy 1.14 csc_matrix.H has been removed, after being deprecated in
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1.12. T.conjugate() is the replacement method, switch to it.
|
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---
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tests/test_cholmod.py | 2 +-
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1 file changed, 1 insertion(+), 1 deletion(-)
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diff --git a/sksparse/test_cholmod.py b/sksparse/test_cholmod.py
|
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index ed2af70..95bdb18 100644
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--- a/sksparse/test_cholmod.py
|
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+++ b/sksparse/test_cholmod.py
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@@ -94,7 +94,7 @@ def complex_matrix():
|
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|
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def factor_of(factor, matrix):
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return np.allclose(
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- (factor.L() * factor.L().H).todense(), matrix.todense()[factor.P()[:, np.newaxis], factor.P()[np.newaxis, :]]
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+ (factor.L() * factor.L().T.conjugate()).todense(), matrix.todense()[factor.P()[:, np.newaxis], factor.P()[np.newaxis, :]]
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)
|
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|
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|
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Reference in New Issue
Block a user