forked from pool/python-sherpa
Accepting request 981947 from home:bnavigator:branches:devel:languages:python:numeric
- Update to 4.14.1
* enhancements:
- various plotting backend improvements
- various i/o backend improvements
- data object class improvements
- basic support for Xspec 12.12.1
- beta support for python 3.10
* documentation changes:
- updated build with CIAO documentation
- Add a missing class (DataOgipResponse) to the documentation
- Improves the docstrings for DataPHA
- fixed typos in plot docs
- clean up readthedocs issues such as missing bullets
* Infrastructure changes:
- updates for compatibility with Clang 12.0
- updates to the regression tests
* bug fixes:
- Improve the FITS headers created when writing out a PHA file (to better match OGIP standards)
- addresses delete_model_component call failing if a key does not exist
- fixed issue with writing a PHA dataset as a table rather than a PHA file
- ensure FITS column access is case insensitive
- image handling and image coordinates
- Drop sherpa-pr1318-py310tests.patch fixed upstream
- Drop sherpa-pr1319-distutils-hack.patch fixed upstream
OBS-URL: https://build.opensuse.org/request/show/981947
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-sherpa?expand=0&rev=23
This commit is contained in:
Git OBS Bridge
parent
10e1774ca2
commit
6273b367ad
@ -1,3 +1,31 @@
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-------------------------------------------------------------------
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Thu Jun 9 20:00:36 UTC 2022 - Ben Greiner <code@bnavigator.de>
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- Update to 4.14.1
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* enhancements:
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- various plotting backend improvements
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- various i/o backend improvements
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- data object class improvements
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- basic support for Xspec 12.12.1
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- beta support for python 3.10
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* documentation changes:
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- updated build with CIAO documentation
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- Add a missing class (DataOgipResponse) to the documentation
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|
- Improves the docstrings for DataPHA
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- fixed typos in plot docs
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- clean up readthedocs issues such as missing bullets
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* Infrastructure changes:
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- updates for compatibility with Clang 12.0
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- updates to the regression tests
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* bug fixes:
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- Improve the FITS headers created when writing out a PHA file (to better match OGIP standards)
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- addresses delete_model_component call failing if a key does not exist
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- fixed issue with writing a PHA dataset as a table rather than a PHA file
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- ensure FITS column access is case insensitive
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- image handling and image coordinates
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- Drop sherpa-pr1318-py310tests.patch fixed upstream
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- Drop sherpa-pr1319-distutils-hack.patch fixed upstream
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-------------------------------------------------------------------
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-------------------------------------------------------------------
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Fri Feb 4 17:05:32 UTC 2022 - Ben Greiner <code@bnavigator.de>
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Fri Feb 4 17:05:32 UTC 2022 - Ben Greiner <code@bnavigator.de>
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@ -18,21 +18,20 @@
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%{?!python_module:%define python_module() python3-%{**}}
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%{?!python_module:%define python_module() python3-%{**}}
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%define skip_python2 1
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%define skip_python2 1
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%define test_data_commit 57cae742c7642494b51c26ba3f27935bbcc0116b
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Name: python-sherpa
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Name: python-sherpa
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Version: 4.14.0
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Version: 4.14.1
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Release: 0
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Release: 0
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Summary: Modeling and fitting package for scientific data analysis
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Summary: Modeling and fitting package for scientific data analysis
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License: GPL-3.0-only
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License: GPL-3.0-only
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URL: https://github.com/sherpa/sherpa/
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URL: https://github.com/sherpa/sherpa/
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Source: https://github.com/sherpa/sherpa/archive/%{version}.tar.gz#/sherpa-%{version}.tar.gz
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Source0: https://github.com/sherpa/sherpa/archive/%{version}.tar.gz#/sherpa-%{version}.tar.gz
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Source1: https://github.com/sherpa/sherpa-test-data/archive/%{test_data_commit}.tar.gz#/sherpa-test-data-%{test_data_commit}.tar.gz
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Patch1: reproducible.patch
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Patch1: reproducible.patch
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# PATCH-FIX-UPSTREAM sherpa-pr1318-py310tests.patch -- gh#sherpa/sherpa#1319
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Patch2: https://github.com/sherpa/sherpa/pull/1318.patch#/sherpa-pr1318-py310tests.patch
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# PATCH-FIX-UPSTREAM sherpa-pr1319-distutils-hack.patch -- gh#sherpa/sherpa#1319
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Patch3: sherpa-pr1319-distutils-hack.patch
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BuildRequires: %{python_module devel >= 3.7}
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BuildRequires: %{python_module devel >= 3.7}
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BuildRequires: %{python_module numpy-devel >= 1.19}
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BuildRequires: %{python_module numpy-devel >= 1.19}
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BuildRequires: %{python_module setuptools}
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# https://sherpa.readthedocs.io/en/latest/install.html#building-from-source
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BuildRequires: %{python_module setuptools < 60}
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BuildRequires: bison
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BuildRequires: bison
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BuildRequires: fdupes
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BuildRequires: fdupes
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BuildRequires: fftw3-devel
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BuildRequires: fftw3-devel
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@ -47,7 +46,7 @@ ExcludeArch: %{ix86} %{arm}
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# SECTION test requirements
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# SECTION test requirements
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BuildRequires: %{python_module pytest >= 3.3}
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BuildRequires: %{python_module pytest >= 3.3}
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BuildRequires: %{python_module pytest-xvfb}
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BuildRequires: %{python_module pytest-xvfb}
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# Highly recommended by upstream when building from source https://sherpa.readthedocs.io/en/latest/install.html#building-from-source
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# Highly recommended by upstream when building from source
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BuildRequires: %{python_module astropy}
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BuildRequires: %{python_module astropy}
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BuildRequires: %{python_module matplotlib}
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BuildRequires: %{python_module matplotlib}
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# /SECTION
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# /SECTION
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@ -59,7 +58,7 @@ user to construct models from definitions and fit those models to
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data, using a variety of statistics and optimization methods.
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data, using a variety of statistics and optimization methods.
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%prep
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%prep
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%setup -q -n sherpa-%{version}
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%setup -q -n sherpa-%{version} -a1
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%autopatch -p1
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%autopatch -p1
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# uncomment system libs
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# uncomment system libs
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sed -i "s|#fftw=local|fftw=local|" setup.cfg
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sed -i "s|#fftw=local|fftw=local|" setup.cfg
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@ -93,8 +92,9 @@ sed -i "1{/\\/usr\\/bin\\/env python/d}" %{buildroot}%{$python_sitearch}/sherpa/
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%check
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%check
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# avoid conftest import mismatch
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# avoid conftest import mismatch
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mv sherpa sherpa_temp
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mv sherpa sherpa_temp
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# astropy 4.2 fits header warning
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export PYTHONPATH=$PWD/sherpa-test-data-%{test_data_commit}
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donttest+="test_load_case_3"
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# unclosed resource warnings by pytest although the tests use Path.to_text which should have closed it.
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donttest="test_save"
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# precision issues
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# precision issues
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%ifnarch x86_64
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%ifnarch x86_64
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donttest+=" or (test_regproj and sherpa.plot.dummy_backend)"
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donttest+=" or (test_regproj and sherpa.plot.dummy_backend)"
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@ -1,3 +0,0 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:b25967d121d7309533001c9cc6ddda4619bf69a3cc27801683386d0d810c7cd7
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size 13071660
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3
sherpa-4.14.1.tar.gz
Normal file
3
sherpa-4.14.1.tar.gz
Normal file
@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:d32058802edb7be2c3a180a6390200cbbe6f28ac043a3e10ed98b7f789ea3dd2
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|
size 13144910
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@ -1,179 +0,0 @@
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From cdaa402d8014e689085a1d7dae3237a82d8b8af4 Mon Sep 17 00:00:00 2001
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From: Douglas Burke <dburke.gw@gmail.com>
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Date: Thu, 7 Oct 2021 16:18:14 -0400
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Subject: [PATCH 1/2] Tests: split up the test_export_method test
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|
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Break up the test into a number of smaller checks (we could go
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more fine-grained but let's see how this works).
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---
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sherpa/utils/tests/test_utils.py | 67 ++++++++++++++++++++------------
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1 file changed, 43 insertions(+), 24 deletions(-)
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diff --git a/sherpa/utils/tests/test_utils.py b/sherpa/utils/tests/test_utils.py
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index 481e97c73..707281f13 100644
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--- a/sherpa/utils/tests/test_utils.py
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+++ b/sherpa/utils/tests/test_utils.py
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@@ -75,34 +75,36 @@ def __init__(self):
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c.z = 5
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-def test_export_method():
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- class C():
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+class C():
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- def m(self, x, y=2):
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- 'Instance method m()'
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- return x * y
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+ def m(self, x, y=2):
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+ 'Instance method m()'
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+ return x * y
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- def margs(self, x, y=2, *args):
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- 'Instance method margs() with *args'
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- return x * y + len(args)
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+ def margs(self, x, y=2, *args):
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+ 'Instance method margs() with *args'
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+ return x * y + len(args)
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- def kwargs(self, x, y=2, **kwargs):
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- 'Instance method kwargs() with **kwargs'
|
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- return x * y + 2 * len(kwargs)
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+ def kwargs(self, x, y=2, **kwargs):
|
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+ 'Instance method kwargs() with **kwargs'
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+ return x * y + 2 * len(kwargs)
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|
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- def bargs(self, x, y=2, *args, **kwargs):
|
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- 'Instance method bargs() with *args and **kwargs'
|
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- return x * y + len(args) + 2 * len(kwargs)
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+ def bargs(self, x, y=2, *args, **kwargs):
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+ 'Instance method bargs() with *args and **kwargs'
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+ return x * y + len(args) + 2 * len(kwargs)
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|
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||||||
- @classmethod
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- def cm(klass, x, y=2):
|
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- 'Class method cm()'
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- return x * y
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+ @classmethod
|
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+ def cm(klass, x, y=2):
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+ 'Class method cm()'
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+ return x * y
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|
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||||||
- @staticmethod
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||||||
- def sm(x, y=2):
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||||||
- 'Static method sm()'
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||||||
- return x * y
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+ @staticmethod
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||||||
+ def sm(x, y=2):
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+ 'Static method sm()'
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+ return x * y
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+
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||||||
+
|
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+def test_export_method_basic():
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c = C()
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@@ -124,13 +126,26 @@ def sm(x, y=2):
|
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||||||
"missing 1 required positional argument: 'x'"
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assert str(exc.value) == emsg
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+
|
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+def test_export_method_args_call():
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||||||
+
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# Check that *args/**kwargs are handled correctly for methods;
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# should perhaps be included above to avoid repeated calls
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# to export_method?
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#
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+ c = C()
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meth = utils.export_method(c.margs)
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assert meth(3, 7, "a", "b") == 23
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|
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+ meth = utils.export_method(c.bargs)
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+ assert meth(3, 7, 14, 15, foo=None) == 25
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+
|
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||||||
+
|
|
||||||
+def test_export_method_args_errors():
|
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+
|
|
||||||
+ c = C()
|
|
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+ meth = utils.export_method(c.margs)
|
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||||||
+
|
|
||||||
with pytest.raises(TypeError) as exc:
|
|
||||||
meth(12, dummy=None)
|
|
||||||
|
|
||||||
@@ -147,8 +162,8 @@ def sm(x, y=2):
|
|
||||||
"but 3 were given"
|
|
||||||
assert str(exc.value) in emsg
|
|
||||||
|
|
||||||
- meth = utils.export_method(c.bargs)
|
|
||||||
- assert meth(3, 7, 14, 15, foo=None) == 25
|
|
||||||
+
|
|
||||||
+def test_export_method_non_method():
|
|
||||||
|
|
||||||
# Non-method argument
|
|
||||||
def f(x):
|
|
||||||
@@ -156,7 +171,11 @@ def f(x):
|
|
||||||
|
|
||||||
assert utils.export_method(f) is f
|
|
||||||
|
|
||||||
+
|
|
||||||
+def test_export_method_names():
|
|
||||||
+
|
|
||||||
# Name and module name
|
|
||||||
+ c = C()
|
|
||||||
m = utils.export_method(c.m, 'foo', 'bar')
|
|
||||||
assert m.__name__ == 'foo'
|
|
||||||
assert m.__module__ == 'bar'
|
|
||||||
|
|
||||||
From c189084bd620010bda0a23ab6e6499a598f53cdc Mon Sep 17 00:00:00 2001
|
|
||||||
From: Douglas Burke <dburke.gw@gmail.com>
|
|
||||||
Date: Thu, 7 Oct 2021 16:37:48 -0400
|
|
||||||
Subject: [PATCH 2/2] Tests: update export_method tests for Python 3.10
|
|
||||||
|
|
||||||
There is a change to how an error message appears for a static
|
|
||||||
method in Python 3.10 (it now includes the original class name).
|
|
||||||
This is not ideal, but for now we adjust the test rather than
|
|
||||||
try to work out whether the code can be changed.
|
|
||||||
|
|
||||||
This is something of an edge case.
|
|
||||||
---
|
|
||||||
sherpa/utils/tests/test_utils.py | 20 +++++++++++++++++---
|
|
||||||
1 file changed, 17 insertions(+), 3 deletions(-)
|
|
||||||
|
|
||||||
diff --git a/sherpa/utils/tests/test_utils.py b/sherpa/utils/tests/test_utils.py
|
|
||||||
index 707281f13..6fa32b7ff 100644
|
|
||||||
--- a/sherpa/utils/tests/test_utils.py
|
|
||||||
+++ b/sherpa/utils/tests/test_utils.py
|
|
||||||
@@ -108,7 +108,11 @@ def test_export_method_basic():
|
|
||||||
|
|
||||||
c = C()
|
|
||||||
|
|
||||||
- # Basic usage
|
|
||||||
+ # Basic usage. The error message depends on
|
|
||||||
+ # a) Python version
|
|
||||||
+ # b) what method is being wrapped
|
|
||||||
+ # (before Python 3.10 it didn't).
|
|
||||||
+ #
|
|
||||||
for meth in (c.m, c.margs, c.kwargs, c.bargs, c.cm, c.sm):
|
|
||||||
m = utils.export_method(meth)
|
|
||||||
|
|
||||||
@@ -122,9 +126,19 @@ def test_export_method_basic():
|
|
||||||
with pytest.raises(TypeError) as exc:
|
|
||||||
m()
|
|
||||||
|
|
||||||
- emsg = "{}() ".format(meth.__name__) + \
|
|
||||||
+ emsg = f"{meth.__name__}() " + \
|
|
||||||
"missing 1 required positional argument: 'x'"
|
|
||||||
- assert str(exc.value) == emsg
|
|
||||||
+
|
|
||||||
+ if meth.__name__ == 'sm':
|
|
||||||
+ # In Python 3.10 we see C.sm rather than sm
|
|
||||||
+ # so we search for both. We could be more explicit
|
|
||||||
+ # and check on the Python version (e.g. for >= 3.10)
|
|
||||||
+ # but it doesn't seem worth it. It's interesting it's
|
|
||||||
+ # only for the static method.
|
|
||||||
+ #
|
|
||||||
+ assert str(exc.value) in [emsg, 'C.' + emsg]
|
|
||||||
+ else:
|
|
||||||
+ assert str(exc.value) == emsg
|
|
||||||
|
|
||||||
|
|
||||||
def test_export_method_args_call():
|
|
||||||
@ -1,431 +0,0 @@
|
|||||||
From bf1424d43f04236d5c004520aa98c58a07de7d9a Mon Sep 17 00:00:00 2001
|
|
||||||
From: Douglas Burke <dburke.gw@gmail.com>
|
|
||||||
Date: Thu, 7 Oct 2021 17:48:48 -0400
|
|
||||||
Subject: [PATCH 1/3] HACK to build stklib with Python 3.10
|
|
||||||
|
|
||||||
This is very not-sensible
|
|
||||||
---
|
|
||||||
extern/stklib-4.11/configure | 48 ++++++++++++------------
|
|
||||||
extern/stklib-4.11/m4/AX_PYTHON_DEVEL.m4 | 38 +++++++++----------
|
|
||||||
2 files changed, 42 insertions(+), 44 deletions(-)
|
|
||||||
|
|
||||||
diff --git a/extern/stklib-4.11/configure b/extern/stklib-4.11/configure
|
|
||||||
index b80b47bb94..65ecf99c5d 100755
|
|
||||||
--- a/extern/stklib-4.11/configure
|
|
||||||
+++ b/extern/stklib-4.11/configure
|
|
||||||
@@ -12106,7 +12106,7 @@ $am_python_setup_sysconfig
|
|
||||||
if can_use_sysconfig:
|
|
||||||
sitedir = sysconfig.get_path('purelib', vars={'base':'$am_py_prefix'})
|
|
||||||
else:
|
|
||||||
- from distutils import sysconfig
|
|
||||||
+ from setuptools._distutils import sysconfig
|
|
||||||
sitedir = sysconfig.get_python_lib(0, 0, prefix='$am_py_prefix')
|
|
||||||
sys.stdout.write(sitedir)"`
|
|
||||||
case $am_cv_python_pythondir in
|
|
||||||
@@ -12150,7 +12150,7 @@ $am_python_setup_sysconfig
|
|
||||||
if can_use_sysconfig:
|
|
||||||
sitedir = sysconfig.get_path('platlib', vars={'platbase':'$am_py_prefix'})
|
|
||||||
else:
|
|
||||||
- from distutils import sysconfig
|
|
||||||
+ from setuptools._distutils import sysconfig
|
|
||||||
sitedir = sysconfig.get_python_lib(1, 0, prefix='$am_py_prefix')
|
|
||||||
sys.stdout.write(sitedir)"`
|
|
||||||
case $am_cv_python_pyexecdir in
|
|
||||||
@@ -12291,18 +12291,18 @@ variable to configure. See \`\`configure --help'' for reference.
|
|
||||||
fi
|
|
||||||
|
|
||||||
#
|
|
||||||
- # Check if you have distutils, else fail
|
|
||||||
+ # Check if you have setuptools._distutils, else fail
|
|
||||||
#
|
|
||||||
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for the distutils Python package" >&5
|
|
||||||
-$as_echo_n "checking for the distutils Python package... " >&6; }
|
|
||||||
- ac_distutils_result=`$PYTHON -c "import distutils" 2>&1`
|
|
||||||
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for the setuptools._distutils Python package" >&5
|
|
||||||
+$as_echo_n "checking for the setuptools._distutils Python package... " >&6; }
|
|
||||||
+ ac_distutils_result=`$PYTHON -c "import setuptools._distutils" 2>&1`
|
|
||||||
if test -z "$ac_distutils_result"; then
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
|
|
||||||
$as_echo "yes" >&6; }
|
|
||||||
else
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
|
|
||||||
$as_echo "no" >&6; }
|
|
||||||
- as_fn_error $? "cannot import Python module \"distutils\".
|
|
||||||
+ as_fn_error $? "cannot import Python module \"setuptools._distutils\".
|
|
||||||
Please check your Python installation. The error was:
|
|
||||||
$ac_distutils_result" "$LINENO" 5
|
|
||||||
PYTHON_VERSION=""
|
|
||||||
@@ -12314,10 +12314,10 @@ $ac_distutils_result" "$LINENO" 5
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for Python include path" >&5
|
|
||||||
$as_echo_n "checking for Python include path... " >&6; }
|
|
||||||
if test -z "$PYTHON_CPPFLAGS"; then
|
|
||||||
- python_path=`$PYTHON -c "import distutils.sysconfig; \
|
|
||||||
- print (distutils.sysconfig.get_python_inc ());"`
|
|
||||||
- plat_python_path=`$PYTHON -c "import distutils.sysconfig; \
|
|
||||||
- print (distutils.sysconfig.get_python_inc (plat_specific=1));"`
|
|
||||||
+ python_path=`$PYTHON -c "import setuptools._distutils.sysconfig; \
|
|
||||||
+ print (setuptools._distutils.sysconfig.get_python_inc ());"`
|
|
||||||
+ plat_python_path=`$PYTHON -c "import setuptools._distutils.sysconfig; \
|
|
||||||
+ print (setuptools._distutils.sysconfig.get_python_inc (plat_specific=1));"`
|
|
||||||
if test -n "${python_path}"; then
|
|
||||||
if test "${plat_python_path}" != "${python_path}"; then
|
|
||||||
python_path="-I$python_path -I$plat_python_path"
|
|
||||||
@@ -12343,7 +12343,7 @@ $as_echo_n "checking for Python library path... " >&6; }
|
|
||||||
|
|
||||||
# join all versioning strings, on some systems
|
|
||||||
# major/minor numbers could be in different list elements
|
|
||||||
-from distutils.sysconfig import *
|
|
||||||
+from setuptools._distutils.sysconfig import *
|
|
||||||
e = get_config_var('VERSION')
|
|
||||||
if e is not None:
|
|
||||||
print(e)
|
|
||||||
@@ -12369,8 +12369,8 @@ _ACEOF
|
|
||||||
ac_python_libdir=`cat<<EOD | $PYTHON -
|
|
||||||
|
|
||||||
# There should be only one
|
|
||||||
-import distutils.sysconfig
|
|
||||||
-e = distutils.sysconfig.get_config_var('LIBDIR')
|
|
||||||
+import setuptools._distutils.sysconfig
|
|
||||||
+e = setuptools._distutils.sysconfig.get_config_var('LIBDIR')
|
|
||||||
if e is not None:
|
|
||||||
print (e)
|
|
||||||
EOD`
|
|
||||||
@@ -12378,8 +12378,8 @@ EOD`
|
|
||||||
# Now, for the library:
|
|
||||||
ac_python_library=`cat<<EOD | $PYTHON -
|
|
||||||
|
|
||||||
-import distutils.sysconfig
|
|
||||||
-c = distutils.sysconfig.get_config_vars()
|
|
||||||
+import setuptools._distutils.sysconfig
|
|
||||||
+c = setuptools._distutils.sysconfig.get_config_vars()
|
|
||||||
if 'LDVERSION' in c:
|
|
||||||
print ('python'+c['LDVERSION'])
|
|
||||||
else:
|
|
||||||
@@ -12398,7 +12398,7 @@ EOD`
|
|
||||||
else
|
|
||||||
# old way: use libpython from python_configdir
|
|
||||||
ac_python_libdir=`$PYTHON -c \
|
|
||||||
- "from distutils.sysconfig import get_python_lib as f; \
|
|
||||||
+ "from setuptools._distutils.sysconfig import get_python_lib as f; \
|
|
||||||
import os; \
|
|
||||||
print (os.path.join(f(plat_specific=1, standard_lib=1), 'config'));"`
|
|
||||||
PYTHON_LDFLAGS="-L$ac_python_libdir -lpython$ac_python_version"
|
|
||||||
@@ -12421,8 +12421,8 @@ $as_echo "$PYTHON_LDFLAGS" >&6; }
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for Python site-packages path" >&5
|
|
||||||
$as_echo_n "checking for Python site-packages path... " >&6; }
|
|
||||||
if test -z "$PYTHON_SITE_PKG"; then
|
|
||||||
- PYTHON_SITE_PKG=`$PYTHON -c "import distutils.sysconfig; \
|
|
||||||
- print (distutils.sysconfig.get_python_lib(0,0));"`
|
|
||||||
+ PYTHON_SITE_PKG=`$PYTHON -c "import setuptools._distutils.sysconfig; \
|
|
||||||
+ print (setuptools._distutils.sysconfig.get_python_lib(0,0));"`
|
|
||||||
fi
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $PYTHON_SITE_PKG" >&5
|
|
||||||
$as_echo "$PYTHON_SITE_PKG" >&6; }
|
|
||||||
@@ -12434,8 +12434,8 @@ $as_echo "$PYTHON_SITE_PKG" >&6; }
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking python extra libraries" >&5
|
|
||||||
$as_echo_n "checking python extra libraries... " >&6; }
|
|
||||||
if test -z "$PYTHON_EXTRA_LIBS"; then
|
|
||||||
- PYTHON_EXTRA_LIBS=`$PYTHON -c "import distutils.sysconfig; \
|
|
||||||
- conf = distutils.sysconfig.get_config_var; \
|
|
||||||
+ PYTHON_EXTRA_LIBS=`$PYTHON -c "import setuptools._distutils.sysconfig; \
|
|
||||||
+ conf = setuptools._distutils.sysconfig.get_config_var; \
|
|
||||||
print (conf('LIBS') + ' ' + conf('SYSLIBS'))"`
|
|
||||||
fi
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $PYTHON_EXTRA_LIBS" >&5
|
|
||||||
@@ -12448,8 +12448,8 @@ $as_echo "$PYTHON_EXTRA_LIBS" >&6; }
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking python extra linking flags" >&5
|
|
||||||
$as_echo_n "checking python extra linking flags... " >&6; }
|
|
||||||
if test -z "$PYTHON_EXTRA_LDFLAGS"; then
|
|
||||||
- PYTHON_EXTRA_LDFLAGS=`$PYTHON -c "import distutils.sysconfig; \
|
|
||||||
- conf = distutils.sysconfig.get_config_var; \
|
|
||||||
+ PYTHON_EXTRA_LDFLAGS=`$PYTHON -c "import setuptools._distutils.sysconfig; \
|
|
||||||
+ conf = setuptools._distutils.sysconfig.get_config_var; \
|
|
||||||
print (conf('LINKFORSHARED'))"`
|
|
||||||
fi
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $PYTHON_EXTRA_LDFLAGS" >&5
|
|
||||||
@@ -15423,5 +15423,3 @@ if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: unrecognized options: $ac_unrecognized_opts" >&5
|
|
||||||
$as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2;}
|
|
||||||
fi
|
|
||||||
-
|
|
||||||
-
|
|
||||||
diff --git a/extern/stklib-4.11/m4/AX_PYTHON_DEVEL.m4 b/extern/stklib-4.11/m4/AX_PYTHON_DEVEL.m4
|
|
||||||
index 266179e146..97bf2c956d 100644
|
|
||||||
--- a/extern/stklib-4.11/m4/AX_PYTHON_DEVEL.m4
|
|
||||||
+++ b/extern/stklib-4.11/m4/AX_PYTHON_DEVEL.m4
|
|
||||||
@@ -135,13 +135,13 @@ variable to configure. See ``configure --help'' for reference.
|
|
||||||
#
|
|
||||||
# Check if you have distutils, else fail
|
|
||||||
#
|
|
||||||
- AC_MSG_CHECKING([for the distutils Python package])
|
|
||||||
- ac_distutils_result=`$PYTHON -c "import distutils" 2>&1`
|
|
||||||
+ AC_MSG_CHECKING([for the distutils/setuptools Python package])
|
|
||||||
+ ac_distutils_result=`$PYTHON -c "import setuptools._distutils" 2>&1`
|
|
||||||
if test -z "$ac_distutils_result"; then
|
|
||||||
AC_MSG_RESULT([yes])
|
|
||||||
else
|
|
||||||
AC_MSG_RESULT([no])
|
|
||||||
- AC_MSG_ERROR([cannot import Python module "distutils".
|
|
||||||
+ AC_MSG_ERROR([cannot import Python module "distutils/setuptools".
|
|
||||||
Please check your Python installation. The error was:
|
|
||||||
$ac_distutils_result])
|
|
||||||
PYTHON_VERSION=""
|
|
||||||
@@ -152,10 +152,10 @@ $ac_distutils_result])
|
|
||||||
#
|
|
||||||
AC_MSG_CHECKING([for Python include path])
|
|
||||||
if test -z "$PYTHON_CPPFLAGS"; then
|
|
||||||
- python_path=`$PYTHON -c "import distutils.sysconfig; \
|
|
||||||
- print (distutils.sysconfig.get_python_inc ());"`
|
|
||||||
- plat_python_path=`$PYTHON -c "import distutils.sysconfig; \
|
|
||||||
- print (distutils.sysconfig.get_python_inc (plat_specific=1));"`
|
|
||||||
+ python_path=`$PYTHON -c "import setuptools._distutils.sysconfig; \
|
|
||||||
+ print (setuptools._distutils.sysconfig.get_python_inc ());"`
|
|
||||||
+ plat_python_path=`$PYTHON -c "import setuptools._distutils.sysconfig; \
|
|
||||||
+ print (setuptools._distutils.sysconfig.get_python_inc (plat_specific=1));"`
|
|
||||||
if test -n "${python_path}"; then
|
|
||||||
if test "${plat_python_path}" != "${python_path}"; then
|
|
||||||
python_path="-I$python_path -I$plat_python_path"
|
|
||||||
@@ -179,7 +179,7 @@ $ac_distutils_result])
|
|
||||||
|
|
||||||
# join all versioning strings, on some systems
|
|
||||||
# major/minor numbers could be in different list elements
|
|
||||||
-from distutils.sysconfig import *
|
|
||||||
+from setuptools._distutils.sysconfig import *
|
|
||||||
e = get_config_var('VERSION')
|
|
||||||
if e is not None:
|
|
||||||
print(e)
|
|
||||||
@@ -202,8 +202,8 @@ EOD`
|
|
||||||
ac_python_libdir=`cat<<EOD | $PYTHON -
|
|
||||||
|
|
||||||
# There should be only one
|
|
||||||
-import distutils.sysconfig
|
|
||||||
-e = distutils.sysconfig.get_config_var('LIBDIR')
|
|
||||||
+import setuptools._distutils.sysconfig
|
|
||||||
+e = setuptools._distutils.sysconfig.get_config_var('LIBDIR')
|
|
||||||
if e is not None:
|
|
||||||
print (e)
|
|
||||||
EOD`
|
|
||||||
@@ -211,8 +211,8 @@ EOD`
|
|
||||||
# Now, for the library:
|
|
||||||
ac_python_library=`cat<<EOD | $PYTHON -
|
|
||||||
|
|
||||||
-import distutils.sysconfig
|
|
||||||
-c = distutils.sysconfig.get_config_vars()
|
|
||||||
+import setuptools._distutils.sysconfig
|
|
||||||
+c = setuptools._distutils.sysconfig.get_config_vars()
|
|
||||||
if 'LDVERSION' in c:
|
|
||||||
print ('python'+c[['LDVERSION']])
|
|
||||||
else:
|
|
||||||
@@ -231,7 +231,7 @@ EOD`
|
|
||||||
else
|
|
||||||
# old way: use libpython from python_configdir
|
|
||||||
ac_python_libdir=`$PYTHON -c \
|
|
||||||
- "from distutils.sysconfig import get_python_lib as f; \
|
|
||||||
+ "from setuptools._distutils.sysconfig import get_python_lib as f; \
|
|
||||||
import os; \
|
|
||||||
print (os.path.join(f(plat_specific=1, standard_lib=1), 'config'));"`
|
|
||||||
PYTHON_LDFLAGS="-L$ac_python_libdir -lpython$ac_python_version"
|
|
||||||
@@ -252,8 +252,8 @@ EOD`
|
|
||||||
#
|
|
||||||
AC_MSG_CHECKING([for Python site-packages path])
|
|
||||||
if test -z "$PYTHON_SITE_PKG"; then
|
|
||||||
- PYTHON_SITE_PKG=`$PYTHON -c "import distutils.sysconfig; \
|
|
||||||
- print (distutils.sysconfig.get_python_lib(0,0));"`
|
|
||||||
+ PYTHON_SITE_PKG=`$PYTHON -c "import setuptools._distutils.sysconfig; \
|
|
||||||
+ print (setuptools._distutils.sysconfig.get_python_lib(0,0));"`
|
|
||||||
fi
|
|
||||||
AC_MSG_RESULT([$PYTHON_SITE_PKG])
|
|
||||||
AC_SUBST([PYTHON_SITE_PKG])
|
|
||||||
@@ -263,8 +263,8 @@ EOD`
|
|
||||||
#
|
|
||||||
AC_MSG_CHECKING(python extra libraries)
|
|
||||||
if test -z "$PYTHON_EXTRA_LIBS"; then
|
|
||||||
- PYTHON_EXTRA_LIBS=`$PYTHON -c "import distutils.sysconfig; \
|
|
||||||
- conf = distutils.sysconfig.get_config_var; \
|
|
||||||
+ PYTHON_EXTRA_LIBS=`$PYTHON -c "import setuptools._distutils.sysconfig; \
|
|
||||||
+ conf = setuptools._distutils.sysconfig.get_config_var; \
|
|
||||||
print (conf('LIBS') + ' ' + conf('SYSLIBS'))"`
|
|
||||||
fi
|
|
||||||
AC_MSG_RESULT([$PYTHON_EXTRA_LIBS])
|
|
||||||
@@ -275,8 +275,8 @@ EOD`
|
|
||||||
#
|
|
||||||
AC_MSG_CHECKING(python extra linking flags)
|
|
||||||
if test -z "$PYTHON_EXTRA_LDFLAGS"; then
|
|
||||||
- PYTHON_EXTRA_LDFLAGS=`$PYTHON -c "import distutils.sysconfig; \
|
|
||||||
- conf = distutils.sysconfig.get_config_var; \
|
|
||||||
+ PYTHON_EXTRA_LDFLAGS=`$PYTHON -c "import setuptools._distutils.sysconfig; \
|
|
||||||
+ conf = setuptools._distutils.sysconfig.get_config_var; \
|
|
||||||
print (conf('LINKFORSHARED'))"`
|
|
||||||
fi
|
|
||||||
AC_MSG_RESULT([$PYTHON_EXTRA_LDFLAGS])
|
|
||||||
|
|
||||||
From fa45219304babfe3b24bdf8b9d2edbe3e73a0b2f Mon Sep 17 00:00:00 2001
|
|
||||||
From: Douglas Burke <dburke.gw@gmail.com>
|
|
||||||
Date: Thu, 7 Oct 2021 17:50:24 -0400
|
|
||||||
Subject: [PATCH 2/3] HACK grplib for python 3.10/distutils
|
|
||||||
|
|
||||||
---
|
|
||||||
extern/grplib-4.9/configure | 48 ++++++++++++++++++-------------------
|
|
||||||
1 file changed, 23 insertions(+), 25 deletions(-)
|
|
||||||
|
|
||||||
diff --git a/extern/grplib-4.9/configure b/extern/grplib-4.9/configure
|
|
||||||
index 132a9e0497..2051e71d65 100755
|
|
||||||
--- a/extern/grplib-4.9/configure
|
|
||||||
+++ b/extern/grplib-4.9/configure
|
|
||||||
@@ -12204,7 +12204,7 @@ $am_python_setup_sysconfig
|
|
||||||
if can_use_sysconfig:
|
|
||||||
sitedir = sysconfig.get_path('purelib', vars={'base':'$am_py_prefix'})
|
|
||||||
else:
|
|
||||||
- from distutils import sysconfig
|
|
||||||
+ from setuptools._distutils import sysconfig
|
|
||||||
sitedir = sysconfig.get_python_lib(0, 0, prefix='$am_py_prefix')
|
|
||||||
sys.stdout.write(sitedir)"`
|
|
||||||
case $am_cv_python_pythondir in
|
|
||||||
@@ -12248,7 +12248,7 @@ $am_python_setup_sysconfig
|
|
||||||
if can_use_sysconfig:
|
|
||||||
sitedir = sysconfig.get_path('platlib', vars={'platbase':'$am_py_prefix'})
|
|
||||||
else:
|
|
||||||
- from distutils import sysconfig
|
|
||||||
+ from setuptools._distutils import sysconfig
|
|
||||||
sitedir = sysconfig.get_python_lib(1, 0, prefix='$am_py_prefix')
|
|
||||||
sys.stdout.write(sitedir)"`
|
|
||||||
case $am_cv_python_pyexecdir in
|
|
||||||
@@ -12389,18 +12389,18 @@ variable to configure. See \`\`configure --help'' for reference.
|
|
||||||
fi
|
|
||||||
|
|
||||||
#
|
|
||||||
- # Check if you have distutils, else fail
|
|
||||||
+ # Check if you have setuptools._distutils, else fail
|
|
||||||
#
|
|
||||||
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for the distutils Python package" >&5
|
|
||||||
-$as_echo_n "checking for the distutils Python package... " >&6; }
|
|
||||||
- ac_distutils_result=`$PYTHON -c "import distutils" 2>&1`
|
|
||||||
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for the setuptools._distutils Python package" >&5
|
|
||||||
+$as_echo_n "checking for the setuptools._distutils Python package... " >&6; }
|
|
||||||
+ ac_distutils_result=`$PYTHON -c "import setuptools._distutils" 2>&1`
|
|
||||||
if test -z "$ac_distutils_result"; then
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
|
|
||||||
$as_echo "yes" >&6; }
|
|
||||||
else
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
|
|
||||||
$as_echo "no" >&6; }
|
|
||||||
- as_fn_error $? "cannot import Python module \"distutils\".
|
|
||||||
+ as_fn_error $? "cannot import Python module \"setuptools._distutils\".
|
|
||||||
Please check your Python installation. The error was:
|
|
||||||
$ac_distutils_result" "$LINENO" 5
|
|
||||||
PYTHON_VERSION=""
|
|
||||||
@@ -12412,10 +12412,10 @@ $ac_distutils_result" "$LINENO" 5
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for Python include path" >&5
|
|
||||||
$as_echo_n "checking for Python include path... " >&6; }
|
|
||||||
if test -z "$PYTHON_CPPFLAGS"; then
|
|
||||||
- python_path=`$PYTHON -c "import distutils.sysconfig; \
|
|
||||||
- print (distutils.sysconfig.get_python_inc ());"`
|
|
||||||
- plat_python_path=`$PYTHON -c "import distutils.sysconfig; \
|
|
||||||
- print (distutils.sysconfig.get_python_inc (plat_specific=1));"`
|
|
||||||
+ python_path=`$PYTHON -c "import setuptools._distutils.sysconfig; \
|
|
||||||
+ print (setuptools._distutils.sysconfig.get_python_inc ());"`
|
|
||||||
+ plat_python_path=`$PYTHON -c "import setuptools._distutils.sysconfig; \
|
|
||||||
+ print (setuptools._distutils.sysconfig.get_python_inc (plat_specific=1));"`
|
|
||||||
if test -n "${python_path}"; then
|
|
||||||
if test "${plat_python_path}" != "${python_path}"; then
|
|
||||||
python_path="-I$python_path -I$plat_python_path"
|
|
||||||
@@ -12441,7 +12441,7 @@ $as_echo_n "checking for Python library path... " >&6; }
|
|
||||||
|
|
||||||
# join all versioning strings, on some systems
|
|
||||||
# major/minor numbers could be in different list elements
|
|
||||||
-from distutils.sysconfig import *
|
|
||||||
+from setuptools._distutils.sysconfig import *
|
|
||||||
e = get_config_var('VERSION')
|
|
||||||
if e is not None:
|
|
||||||
print(e)
|
|
||||||
@@ -12467,8 +12467,8 @@ _ACEOF
|
|
||||||
ac_python_libdir=`cat<<EOD | $PYTHON -
|
|
||||||
|
|
||||||
# There should be only one
|
|
||||||
-import distutils.sysconfig
|
|
||||||
-e = distutils.sysconfig.get_config_var('LIBDIR')
|
|
||||||
+import setuptools._distutils.sysconfig
|
|
||||||
+e = setuptools._distutils.sysconfig.get_config_var('LIBDIR')
|
|
||||||
if e is not None:
|
|
||||||
print (e)
|
|
||||||
EOD`
|
|
||||||
@@ -12476,8 +12476,8 @@ EOD`
|
|
||||||
# Now, for the library:
|
|
||||||
ac_python_library=`cat<<EOD | $PYTHON -
|
|
||||||
|
|
||||||
-import distutils.sysconfig
|
|
||||||
-c = distutils.sysconfig.get_config_vars()
|
|
||||||
+import setuptools._distutils.sysconfig
|
|
||||||
+c = setuptools._distutils.sysconfig.get_config_vars()
|
|
||||||
if 'LDVERSION' in c:
|
|
||||||
print ('python'+c['LDVERSION'])
|
|
||||||
else:
|
|
||||||
@@ -12496,7 +12496,7 @@ EOD`
|
|
||||||
else
|
|
||||||
# old way: use libpython from python_configdir
|
|
||||||
ac_python_libdir=`$PYTHON -c \
|
|
||||||
- "from distutils.sysconfig import get_python_lib as f; \
|
|
||||||
+ "from setuptools._distutils.sysconfig import get_python_lib as f; \
|
|
||||||
import os; \
|
|
||||||
print (os.path.join(f(plat_specific=1, standard_lib=1), 'config'));"`
|
|
||||||
PYTHON_LDFLAGS="-L$ac_python_libdir -lpython$ac_python_version"
|
|
||||||
@@ -12519,8 +12519,8 @@ $as_echo "$PYTHON_LDFLAGS" >&6; }
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for Python site-packages path" >&5
|
|
||||||
$as_echo_n "checking for Python site-packages path... " >&6; }
|
|
||||||
if test -z "$PYTHON_SITE_PKG"; then
|
|
||||||
- PYTHON_SITE_PKG=`$PYTHON -c "import distutils.sysconfig; \
|
|
||||||
- print (distutils.sysconfig.get_python_lib(0,0));"`
|
|
||||||
+ PYTHON_SITE_PKG=`$PYTHON -c "import setuptools._distutils.sysconfig; \
|
|
||||||
+ print (setuptools._distutils.sysconfig.get_python_lib(0,0));"`
|
|
||||||
fi
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $PYTHON_SITE_PKG" >&5
|
|
||||||
$as_echo "$PYTHON_SITE_PKG" >&6; }
|
|
||||||
@@ -12532,8 +12532,8 @@ $as_echo "$PYTHON_SITE_PKG" >&6; }
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking python extra libraries" >&5
|
|
||||||
$as_echo_n "checking python extra libraries... " >&6; }
|
|
||||||
if test -z "$PYTHON_EXTRA_LIBS"; then
|
|
||||||
- PYTHON_EXTRA_LIBS=`$PYTHON -c "import distutils.sysconfig; \
|
|
||||||
- conf = distutils.sysconfig.get_config_var; \
|
|
||||||
+ PYTHON_EXTRA_LIBS=`$PYTHON -c "import setuptools._distutils.sysconfig; \
|
|
||||||
+ conf = setuptools._distutils.sysconfig.get_config_var; \
|
|
||||||
print (conf('LIBS') + ' ' + conf('SYSLIBS'))"`
|
|
||||||
fi
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $PYTHON_EXTRA_LIBS" >&5
|
|
||||||
@@ -12546,8 +12546,8 @@ $as_echo "$PYTHON_EXTRA_LIBS" >&6; }
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking python extra linking flags" >&5
|
|
||||||
$as_echo_n "checking python extra linking flags... " >&6; }
|
|
||||||
if test -z "$PYTHON_EXTRA_LDFLAGS"; then
|
|
||||||
- PYTHON_EXTRA_LDFLAGS=`$PYTHON -c "import distutils.sysconfig; \
|
|
||||||
- conf = distutils.sysconfig.get_config_var; \
|
|
||||||
+ PYTHON_EXTRA_LDFLAGS=`$PYTHON -c "import setuptools._distutils.sysconfig; \
|
|
||||||
+ conf = setuptools._distutils.sysconfig.get_config_var; \
|
|
||||||
print (conf('LINKFORSHARED'))"`
|
|
||||||
fi
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $PYTHON_EXTRA_LDFLAGS" >&5
|
|
||||||
@@ -15577,5 +15577,3 @@ if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then
|
|
||||||
{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: unrecognized options: $ac_unrecognized_opts" >&5
|
|
||||||
$as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2;}
|
|
||||||
fi
|
|
||||||
-
|
|
||||||
-
|
|
||||||
|
|
||||||
From 20a51ce086fa4c6801a6d519c620ea83f4effb92 Mon Sep 17 00:00:00 2001
|
|
||||||
From: Douglas Burke <dburke.gw@gmail.com>
|
|
||||||
Date: Thu, 7 Oct 2021 18:48:29 -0400
|
|
||||||
Subject: [PATCH 3/3] Ensure we have a setuptools which contains distutils
|
|
||||||
|
|
||||||
---
|
|
||||||
pyproject.toml | 2 +-
|
|
||||||
1 file changed, 1 insertion(+), 1 deletion(-)
|
|
||||||
|
|
||||||
diff --git a/pyproject.toml b/pyproject.toml
|
|
||||||
index 60d90c72f0..52ce9e6df4 100644
|
|
||||||
--- a/pyproject.toml
|
|
||||||
+++ b/pyproject.toml
|
|
||||||
@@ -1,5 +1,5 @@
|
|
||||||
[build-system]
|
|
||||||
-requires = ["setuptools",
|
|
||||||
+requires = ["setuptools>=49.1.2",
|
|
||||||
"wheel",
|
|
||||||
"oldest-supported-numpy",
|
|
||||||
]
|
|
||||||
@ -0,0 +1,3 @@
|
|||||||
|
version https://git-lfs.github.com/spec/v1
|
||||||
|
oid sha256:90433611f99a54ab8e9fe8b7dfd67a86661955f8cf3a8f6aa90ae0e3c4d70d17
|
||||||
|
size 134767384
|
||||||
Loading…
Reference in New Issue
Block a user