rpm/python-xarray
SHA256
1
0
Fork 0
forked from pool/python-xarray
Code Pull Requests Activity

- remove xarray-pr5449-dask-meta.patch, merged upstream.

Browse Source 
- remove test_resample_loffset.patch, merged upstream.
- update to version 0.19.0:
 - This release brings improvements to plotting of categorical data, the ability to specify how attributes:
 - are combined in xarray operations, a new high-level :py:func:`unify_chunks` function, as well as various:
 - deprecations, bug fixes, and minor improvements.:
 - Many thanks to the 29 contributors to this release!:
 - Andrew Williams, Augustus, Aureliana Barghini, Benoit Bovy, crusaderky, Deepak Cherian, ellesmith88,:
 - Elliott Sales de Andrade, Giacomo Caria, github-actions[bot], Illviljan, Joeperdefloep, joooeey, Julia Kent,:
 - Julius Busecke, keewis, Mathias Hauser, Matthias Göbel, Mattia Almansi, Maximilian Roos, Peter Andreas Entschev,:
 - Ray Bell, Sander, Santiago Soler, Sebastian, Spencer Clark, Stephan Hoyer, Thomas Hirtz, Thomas Nicholas.:
 - New Features:
  - Allow passing argument ``missing_dims`` to :py:meth:`Variable.transpose` and :py:meth:`Dataset.transpose`
    (:issue:`5550`, :pull:`5586`)
    By `Giacomo Caria <https://github.com/gcaria>`_.
  - Allow passing a dictionary as coords to a :py:class:`DataArray` (:issue:`5527`,
    reverts :pull:`1539`, which had deprecated this due to python's inconsistent ordering in earlier versions).
    By `Sander van Rijn <https://github.com/sjvrijn>`_.
  - Added :py:meth:`Dataset.coarsen.construct`, :py:meth:`DataArray.coarsen.construct` (:issue:`5454`, :pull:`5475`).
    By `Deepak Cherian <https://github.com/dcherian>`_.
  - Xarray now uses consolidated metadata by default when writing and reading Zarr
    stores (:issue:`5251`).
    By `Stephan Hoyer <https://github.com/shoyer>`_.
  - New top-level function :py:func:`unify_chunks`.
    By `Mattia Almansi <https://github.com/malmans2>`_.
  - Allow assigning values to a subset of a dataset using positional or label-based
    indexing (:issue:`3015`, :pull:`5362`).
    By `Matthias Göbel <https://github.com/matzegoebel>`_.
  - Attempting to reduce a weighted object over missing dimensions now raises an error (:pull:`5362`).
    By `Mattia Almansi <https://github.com/malmans2>`_.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-xarray?expand=0&rev=56
This commit is contained in:
Sebastian Wagner 2021-07-27 13:28:20 +00:00 committed by Git OBS Bridge
parent 23dcca268c
commit 1b835a8f4a
5 changed files with 107 additions and 124 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

103
python-xarray.changes
View File

@ -1,3 +1,106 @@
-------------------------------------------------------------------
Tue Jul 27 11:01:52 UTC 2021 - Sebastian Wagner <sebix+novell.com@sebix.at>
- remove xarray-pr5449-dask-meta.patch, merged upstream.
- remove test_resample_loffset.patch, merged upstream.
- update to version 0.19.0:
- This release brings improvements to plotting of categorical data, the ability to specify how attributes:
- are combined in xarray operations, a new high-level :py:func:`unify_chunks` function, as well as various:
- deprecations, bug fixes, and minor improvements.:
- Many thanks to the 29 contributors to this release!:
- Andrew Williams, Augustus, Aureliana Barghini, Benoit Bovy, crusaderky, Deepak Cherian, ellesmith88,:
- Elliott Sales de Andrade, Giacomo Caria, github-actions[bot], Illviljan, Joeperdefloep, joooeey, Julia Kent,:
- Julius Busecke, keewis, Mathias Hauser, Matthias Göbel, Mattia Almansi, Maximilian Roos, Peter Andreas Entschev,:
- Ray Bell, Sander, Santiago Soler, Sebastian, Spencer Clark, Stephan Hoyer, Thomas Hirtz, Thomas Nicholas.:
- New Features:
- Allow passing argument ``missing_dims`` to :py:meth:`Variable.transpose` and :py:meth:`Dataset.transpose`
(:issue:`5550`, :pull:`5586`)
By `Giacomo Caria <https://github.com/gcaria>`_.
- Allow passing a dictionary as coords to a :py:class:`DataArray` (:issue:`5527`,
reverts :pull:`1539`, which had deprecated this due to python's inconsistent ordering in earlier versions).
By `Sander van Rijn <https://github.com/sjvrijn>`_.
- Added :py:meth:`Dataset.coarsen.construct`, :py:meth:`DataArray.coarsen.construct` (:issue:`5454`, :pull:`5475`).
By `Deepak Cherian <https://github.com/dcherian>`_.
- Xarray now uses consolidated metadata by default when writing and reading Zarr
stores (:issue:`5251`).
By `Stephan Hoyer <https://github.com/shoyer>`_.
- New top-level function :py:func:`unify_chunks`.
By `Mattia Almansi <https://github.com/malmans2>`_.
- Allow assigning values to a subset of a dataset using positional or label-based
indexing (:issue:`3015`, :pull:`5362`).
By `Matthias Göbel <https://github.com/matzegoebel>`_.
- Attempting to reduce a weighted object over missing dimensions now raises an error (:pull:`5362`).
By `Mattia Almansi <https://github.com/malmans2>`_.
- Add ``.sum`` to :py:meth:`~xarray.DataArray.rolling_exp` and
:py:meth:`~xarray.Dataset.rolling_exp` for exponentially weighted rolling
sums. These require numbagg 0.2.1;
(:pull:`5178`).
By `Maximilian Roos <https://github.com/max-sixty>`_.
- :py:func:`xarray.cov` and :py:func:`xarray.corr` now lazily check for missing
values if inputs are dask arrays (:issue:`4804`, :pull:`5284`).
By `Andrew Williams <https://github.com/AndrewWilliams3142>`_.
- Attempting to ``concat`` list of elements that are not all ``Dataset`` or all ``DataArray`` now raises an error (:issue:`5051`, :pull:`5425`).
By `Thomas Hirtz <https://github.com/thomashirtz>`_.
- allow passing a function to ``combine_attrs`` (:pull:`4896`).
By `Justus Magin <https://github.com/keewis>`_.
- Allow plotting categorical data (:pull:`5464`).
By `Jimmy Westling <https://github.com/illviljan>`_.
- Allow removal of the coordinate attribute ``coordinates`` on variables by setting ``.attrs['coordinates']= None``
(:issue:`5510`).
By `Elle Smith <https://github.com/ellesmith88>`_.
- Added :py:meth:`DataArray.to_numpy`, :py:meth:`DataArray.as_numpy`, and :py:meth:`Dataset.as_numpy`. (:pull:`5568`).
By `Tom Nicholas <https://github.com/TomNicholas>`_.
- Units in plot labels are now automatically inferred from wrapped :py:meth:`pint.Quantity` arrays. (:pull:`5561`).
By `Tom Nicholas <https://github.com/TomNicholas>`_.
- Breaking changes:
- The default ``mode`` for :py:meth:`Dataset.to_zarr` when ``region`` is set
has changed to the new ``mode="r+"``, which only allows for overriding
pre-existing array values. This is a safer default than the prior ``mode="a"``,
and allows for higher performance writes (:pull:`5252`).
By `Stephan Hoyer <https://github.com/shoyer>`_.
- The main parameter to :py:func:`combine_by_coords` is renamed to `data_objects` instead
of `datasets` so anyone calling this method using a named parameter will need to update
the name accordingly (:issue:`3248`, :pull:`4696`).
By `Augustus Ijams <https://github.com/aijams>`_.
- Deprecations:
- Removed the deprecated ``dim`` kwarg to :py:func:`DataArray.integrate` (:pull:`5630`)
- Removed the deprecated ``keep_attrs`` kwarg to :py:func:`DataArray.rolling` (:pull:`5630`)
- Removed the deprecated ``keep_attrs`` kwarg to :py:func:`DataArray.coarsen` (:pull:`5630`)
- Completed deprecation of passing an ``xarray.DataArray`` to :py:func:`Variable` - will now raise a ``TypeError`` (:pull:`5630`)
- Bug fixes:
- Fix a minor incompatibility between partial datetime string indexing with a
:py:class:`CFTimeIndex` and upcoming pandas version 1.3.0 (:issue:`5356`,
:pull:`5359`).
By `Spencer Clark <https://github.com/spencerkclark>`_.
- Fix 1-level multi-index incorrectly converted to single index (:issue:`5384`,
:pull:`5385`).
By `Benoit Bovy <https://github.com/benbovy>`_.
- Don't cast a duck array in a coordinate to :py:class:`numpy.ndarray` in
:py:meth:`DataArray.differentiate` (:pull:`5408`)
By `Justus Magin <https://github.com/keewis>`_.
- Fix the ``repr`` of :py:class:`Variable` objects with ``display_expand_data=True``
(:pull:`5406`)
By `Justus Magin <https://github.com/keewis>`_.
- Plotting a pcolormesh with ``xscale="log"`` and/or ``yscale="log"`` works as
expected after improving the way the interval breaks are generated (:issue:`5333`).
By `Santiago Soler <https://github.com/santisoler>`_
- :py:func:`combine_by_coords` can now handle combining a list of unnamed
``DataArray`` as input (:issue:`3248`, :pull:`4696`).
By `Augustus Ijams <https://github.com/aijams>`_.
- Internal Changes:
- Run CI on the first & last python versions supported only; currently 3.7 & 3.9.
(:pull:`5433`)
By `Maximilian Roos <https://github.com/max-sixty>`_.
- Publish test results & timings on each PR.
(:pull:`5537`)
By `Maximilian Roos <https://github.com/max-sixty>`_.
- Explicit indexes refactor: add a ``xarray.Index.query()`` method in which
one may eventually provide a custom implementation of label-based data
selection (not ready yet for public use). Also refactor the internal,
pandas-specific implementation into ``PandasIndex.query()`` and
``PandasMultiIndex.query()`` (:pull:`5322`).
By `Benoit Bovy <https://github.com/benbovy>`_.
------------------------------------------------------------------- -------------------------------------------------------------------
Fri Jul 16 16:01:56 UTC 2021 - Ben Greiner <code@bnavigator.de> Fri Jul 16 16:01:56 UTC 2021 - Ben Greiner <code@bnavigator.de>

7
python-xarray.spec
View File

@ -21,7 +21,7 @@
# NEP 29: Numpy 1.20 dropped support for Python 3.6, python36-numpy is removed from Tumbleweed. xarray will follow on next release # NEP 29: Numpy 1.20 dropped support for Python 3.6, python36-numpy is removed from Tumbleweed. xarray will follow on next release
%define skip_python36 1 %define skip_python36 1
Name: python-xarray Name: python-xarray
Version: 0.18.2 Version: 0.19.0
Release: 0 Release: 0
Summary: N-D labeled arrays and datasets in Python Summary: N-D labeled arrays and datasets in Python
License: Apache-2.0 License: Apache-2.0
@ -33,11 +33,6 @@ Patch0: local_dataset.patch
# PATCH-FIX-UPSTREAM scipy-interpolate.patch gh#pydata/xarray#5375 mcepl@suse.com # PATCH-FIX-UPSTREAM scipy-interpolate.patch gh#pydata/xarray#5375 mcepl@suse.com
# Add missing import scipy.interpolate # Add missing import scipy.interpolate
Patch1: scipy-interpolate.patch Patch1: scipy-interpolate.patch
# PATCH-FIX-UPSTREAM test_resample_loffset.patch gh#pydata/xarray#5364 mcepl@suse.com
# use assert_allclose in test_resample_loffset test
Patch2: test_resample_loffset.patch
# PATCH-FIX-UPSTREAM xarray-pr5449-dask-meta.patch -- gh#pydata/xarray#5449
Patch3: https://github.com/pydata/xarray/pull/5449.patch#/xarray-pr5449-dask-meta.patch
BuildRequires: %{python_module numpy >= 1.15} BuildRequires: %{python_module numpy >= 1.15}
BuildRequires: %{python_module numpy-devel >= 1.14} BuildRequires: %{python_module numpy-devel >= 1.14}
BuildRequires: %{python_module pandas >= 0.25} BuildRequires: %{python_module pandas >= 0.25}

3
xarray-0.18.2.tar.gz
View File

@ -1,3 +0,0 @@
version https://git-lfs.github.com/spec/v1
oid sha256:5d2e72a228286fcf60f66e16876bd27629a1a70bf64822c565f16515c4d10284
size 2850065

3
xarray-0.19.0.tar.gz Normal file
View File

@ -0,0 +1,3 @@
version https://git-lfs.github.com/spec/v1
oid sha256:3a365ce09127fc841ba88baa63f37ca61376ffe389a6c5e66d52f2c88c23a62b
size 2882403

115
xarray-pr5449-dask-meta.patch
View File

@ -1,115 +0,0 @@
From 941b8a8286178c13ee057d87a5198f163c174b0e Mon Sep 17 00:00:00 2001
From: Mathias Hauser <mathias.hauser@env.ethz.ch>
Date: Mon, 7 Jun 2021 20:21:00 +0200
Subject: [PATCH 1/3] fix dask meta and output_dtypes error
---
xarray/tests/test_computation.py | 13 ++++++++++---
1 file changed, 10 insertions(+), 3 deletions(-)
diff --git a/xarray/tests/test_computation.py b/xarray/tests/test_computation.py
index b7ae1ca982..7759e7d6a8 100644
--- a/xarray/tests/test_computation.py
+++ b/xarray/tests/test_computation.py
@@ -1313,7 +1313,8 @@ def test_vectorize_dask_dtype_meta():
data_array = xr.DataArray([[0, 1, 2], [1, 2, 3]], dims=("x", "y"))
expected = xr.DataArray([1, 2], dims=["x"])
- actual = apply_ufunc(
+ func = functools.partial(
+ apply_ufunc,
pandas_median,
data_array.chunk({"x": 1}),
input_core_dims=[["y"]],
@@ -1323,8 +1324,14 @@ def test_vectorize_dask_dtype_meta():
dask_gufunc_kwargs=dict(meta=np.ndarray((0, 0), dtype=float)),
)
- assert_identical(expected, actual)
- assert float == actual.dtype
+ # dask/dask#7669: can no longer pass output_dtypes and meta
+ if LooseVersion(dask.__version__) >= "2021.06":
+ with pytest.raises(ValueError):
+ func()
+ else:
+ actual = func()
+ assert_identical(expected, actual)
+ assert float == actual.dtype
def pandas_median_add(x, y):
From 2e51db563f82657a30a0b3d87f0ddab36a936fe9 Mon Sep 17 00:00:00 2001
From: Mathias Hauser <mathias.hauser@env.ethz.ch>
Date: Mon, 7 Jun 2021 21:48:15 +0200
Subject: [PATCH 2/3] don't test in newer dask versions
---
xarray/tests/test_computation.py | 18 +++++++-----------
1 file changed, 7 insertions(+), 11 deletions(-)
diff --git a/xarray/tests/test_computation.py b/xarray/tests/test_computation.py
index 7759e7d6a8..92a543e14b 100644
--- a/xarray/tests/test_computation.py
+++ b/xarray/tests/test_computation.py
@@ -1306,15 +1306,17 @@ def test_vectorize_dask_dtype_without_output_dtypes(data_array):
assert expected.dtype == actual.dtype
-@pytest.mark.xfail(LooseVersion(dask.__version__) < "2.3", reason="dask GH5274")
+@pytest.mark.skip(
+ LooseVersion(dask.__version__) > "2021.06",
+ reason="dask/dask#7669: can no longer pass output_dtypes and meta",
+)
@requires_dask
def test_vectorize_dask_dtype_meta():
# meta dtype takes precedence
data_array = xr.DataArray([[0, 1, 2], [1, 2, 3]], dims=("x", "y"))
expected = xr.DataArray([1, 2], dims=["x"])
- func = functools.partial(
- apply_ufunc,
+ actual = apply_ufunc(
pandas_median,
data_array.chunk({"x": 1}),
input_core_dims=[["y"]],
@@ -1324,14 +1326,8 @@ def test_vectorize_dask_dtype_meta():
dask_gufunc_kwargs=dict(meta=np.ndarray((0, 0), dtype=float)),
)
- # dask/dask#7669: can no longer pass output_dtypes and meta
- if LooseVersion(dask.__version__) >= "2021.06":
- with pytest.raises(ValueError):
- func()
- else:
- actual = func()
- assert_identical(expected, actual)
- assert float == actual.dtype
+ assert_identical(expected, actual)
+ assert float == actual.dtype
def pandas_median_add(x, y):
From a4cef6dac3fa5a84f144e56c63ce4b3b903681b4 Mon Sep 17 00:00:00 2001
From: Mathias Hauser <mathias.hauser@env.ethz.ch>
Date: Mon, 7 Jun 2021 21:56:46 +0200
Subject: [PATCH 3/3] skipIF
---
xarray/tests/test_computation.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/xarray/tests/test_computation.py b/xarray/tests/test_computation.py
index 92a543e14b..09bed72496 100644
--- a/xarray/tests/test_computation.py
+++ b/xarray/tests/test_computation.py
@@ -1306,7 +1306,7 @@ def test_vectorize_dask_dtype_without_output_dtypes(data_array):
assert expected.dtype == actual.dtype
-@pytest.mark.skip(
+@pytest.mark.skipif(
LooseVersion(dask.__version__) > "2021.06",
reason="dask/dask#7669: can no longer pass output_dtypes and meta",
)