rpm/python3-espressomd
SHA256
1
0
Fork 0
forked from pool/python3-espressomd
Code Pull Requests Activity

Accepting request 1061418 from home:jngrad:branches:devel:languages:python:numeric

Browse Source 
Fixed testsuite for numpy 1.24

OBS-URL: https://build.opensuse.org/request/show/1061418
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python3-espressomd?expand=0&rev=42
This commit is contained in:
Markéta Machová 2023-01-27 09:39:21 +00:00 committed by Git OBS Bridge
parent dcc3b42643
commit 7f52a710bb
3 changed files with 45 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

36
numpy-1.24.patch Normal file
View File

@ -0,0 +1,36 @@
commit bff5e2703d4371f06f281d48181431558066d566
Author: Jean-Noël Grad <jgrad@icp.uni-stuttgart.de>
Date: Tue Dec 20 19:36:34 2022 +0100
tests: Replace deprecated numpy option
Option 'normed' in numpy.histogramdd was deprecated since 1.15 and
removed in 1.24.
---
testsuite/python/observable_profile.py | 2 +-
testsuite/python/observable_profileLB.py | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
--- a/testsuite/python/observable_profile.py
+++ b/testsuite/python/observable_profile.py
@@ -51,7 +51,7 @@ def test_density_profile(self):
obs_bin_centers = density_profile.bin_centers()
np_hist, np_edges = tests_common.get_histogram(
np.copy(self.system.part.all().pos), self.kwargs, 'cartesian',
- normed=True)
+ density=True)
np_hist *= len(self.system.part)
np.testing.assert_array_almost_equal(obs_data, np_hist)
for i in range(3):
--- a/testsuite/python/observable_profileLB.py
+++ b/testsuite/python/observable_profileLB.py
@@ -91,7 +91,7 @@ def test_velocity_profile(self):
obs_edges = obs.call_method("edges")
_, np_edges = tests_common.get_histogram(
np.zeros([1, 3]), LB_VELOCITY_PROFILE_PARAMS, 'cartesian',
- normed=True)
+ density=True)
for i in range(3):
np.testing.assert_array_almost_equal(obs_edges[i], np_edges[i])
for x in range(obs_data.shape[0]):

6
python3-espressomd.changes
View File

@ -1,3 +1,9 @@
-------------------------------------------------------------------
Thu Jan 26 19:46:39 UTC 2023 - Jean-Noel Grad <jgrad@icp.uni-stuttgart.de>
- added numpy-1.24.patch to fix the testsuite (see
gh#espressomd/espresso#4635)
-------------------------------------------------------------------
Thu Sep 15 07:47:38 UTC 2022 - Guillaume GARDET <guillaume.gardet@opensuse.org>

4
python3-espressomd.spec
View File

@ -1,7 +1,7 @@
#
# spec file
#
# Copyright (c) 2022 SUSE LLC
# Copyright (c) 2023 SUSE LLC
# Copyright (c) 2014 Christoph Junghans
#
# All modifications and additions to the file contributed by third parties
@ -52,6 +52,8 @@ Patch2: hdf5.patch
Patch3: rpath.patch
# PATCH-FIX-UPSTREAM fix-broken-fft-check.patch gh#espressomd/espresso#4567
Patch4: fix-broken-fft-check.patch
# PATCH-FIX-UPSTREAM numpy-1.24.patch gh#espressomd/espresso#4635
Patch5: numpy-1.24.patch
# According to gh#espressomd/espresso#4537 32bit architectures are not supported any more
ExcludeArch: %{ix86}
BuildRequires: cmake