forked from pool/spack
Accepting request 854051 from network:cluster:staging
- added test for /etc/spack/no_rpm_trigger - added %triggerin and %triggerpostun for the packages which can be detected by spack - updated to 0.16.0 - added find for external packages - added dockerfile for leap * added patchfile added-dockerfile-for-opensuse-leap-15.patch - Add documentation (man and info pages, pdf doesn't build currently). * Do not ship documentation sources. - Do not distribute Dockerfiles and other container related material, yet. This needs to be fixed so that the samples work with SUSE. - Fully integrate spack into SUSE directory structure, fix paths where required. * Fix setup scripts to work correctly in above environment. OBS-URL: https://build.opensuse.org/request/show/854051 OBS-URL: https://build.opensuse.org/package/show/network:cluster/spack?expand=0&rev=3
This commit is contained in:
Git OBS Bridge
182
spack.spec
182
spack.spec
@@ -15,28 +15,49 @@
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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%global flavor @BUILD_FLAVOR@%{?nil}
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%if "%{flavor}" == "doc"
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%bcond_without doc
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%endif
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%if %{with doc} && (0%{?sle_version} > 0) && (150200 >= 0%{?sle_version})
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ExclusiveArch: do_not_build
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%endif
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%define spack_dir %_prefix/lib/spack/
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%define spack_group spack
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# These packages are found and can be used by spack, /etc/spack/packages-yaml
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# needs to be updated when one of these packages is updated or uninstalled.
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# Distinguish between packages we recommend and packages which
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%define spack_trigger_recommended autoconf bash bison bzip2 cmake-full ccache cpio diffutils findutils flex gcc gcc-fortran git-lfs make m4 ncurses-devel libtool openssl perl-base pkgconf pkgconf-pkg-config python3-basetar info xz
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# packages recognized by spack, but not recommended
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%define spack_trigger_packages ghostscript go fish fzf hugo java-11-openjdk-devel java-14-openjdk-devel java-15-openjdk-devel java-16-openjdk-devel java-1_8_0-openjdk-devel ruby
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# non oss packages
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%define spack_trigger_external cuda-nvcc
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Name: spack
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Version: 0.15.4
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Version: 0.16.0
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Release: 0
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Summary: Package manager for HPC systems
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License: Apache-2.0 AND MIT AND Python-2.0 AND BSD-3-Clause
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URL: https://spack.io
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Source0: https://github.com/spack/spack/archive/v%{version}.tar.gz#/spack-%{version}.tar.gz
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Source0: https://github.com/spack/spack/archive/v%{version}.tar.gz#/spack-%{version}.tar.gz
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Source1: README.SUSE
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Source1: spack-recipes-rpmlintrc
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Source2: spack-rpmlintrc
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Patch0: Make-spack-paths-compliant-to-distro-installation.patch
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Patch1: fix-tumbleweed-naming.patch
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Patch2: Adapt-shell-scripts-that-set-up-the-environment-for-different-shells.patch
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Patch3: added-dockerfile-for-opensuse-leap-15.patch
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# upstream patch removes also problemtatic binaries
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#Patch4: spack-test-15702.patch
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%if %{without doc}
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BuildRequires: polkit
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BuildRequires: fdupes
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BuildRequires: python-base
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BuildRequires: python3-urllib3
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BuildRequires: lua-lmod
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Requires: %{name}-recipes = %{version}
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Requires: curl
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Requires: lua-lmod
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Requires: pattern() = devel_basis
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Requires: polkit
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Requires: gcc-fortran
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Requires: gpg2
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@@ -44,8 +65,25 @@ Requires: xz
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Requires: bzip2
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Requires: spack-recipes
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Recommends: spack-recipes = %version
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Recommends: %spack_trigger_recommended
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%else
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BuildRequires: patterns-base-basesystem
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BuildRequires: spack
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BuildRequires: makeinfo
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BuildRequires: distribution-release
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BuildRequires: %{python_module Sphinx >= 1.8}
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BuildRequires: %{python_module sphinxcontrib-programoutput}
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BuildRequires: git
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# html
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BuildRequires: graphviz
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# info
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BuildRequires: graphviz-gnome
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## pdf
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# BuildRequires: python3-Sphinx-latex
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Requires: spack
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%endif
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BuildArch: noarch
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%if 0%{?sle_version} <= 120500 && !0%{?is_opensuse}
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%if 0%{?sle_version} <= 120500 && !0%{?is_opensuse}
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%define __python3 python3
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%endif
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@@ -77,68 +115,127 @@ using different compilers, options, and MPI implementations.
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This package contains the built-in package recipes.
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%package man
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Summary: Man Page for Spack - Package manager for HPC systems
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Requires: man
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%description man
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Spack is a configurable Python-based HPC package manager, automating
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the installation and fine-tuning of simulations and libraries.
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It operates on a wide variety of HPC platforms and enables users
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to build many code configurations. Software installed by Spack
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runs correctly regardless of environment, and file management
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is streamlined. Spack can install many variants of the same build
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using different compilers, options, and MPI implementations.
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This package contains the man page.
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%package info
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Summary: Info Page for Spack - Package manager for HPC systems
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Requires: info
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%description info
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Spack is a configurable Python-based HPC package manager, automating
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the installation and fine-tuning of simulations and libraries.
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It operates on a wide variety of HPC platforms and enables users
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to build many code configurations. Software installed by Spack
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runs correctly regardless of environment, and file management
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is streamlined. Spack can install many variants of the same build
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using different compilers, options, and MPI implementations.
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This package contains the info page.
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%prep
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%setup -q
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%if %{without doc}
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%autopatch -p1
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# set SPACK_ROOT
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for i in share/spack/setup-env.*; do
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sed -i -e "s;@@_prefix@@;%_prefix;g" $i
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done
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%endif
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%build
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# Nothing to build
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%if %{with doc}
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cd lib/spack/docs
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# Causes issues building texinfo as a suitable image cannot be found
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grep -rl ":target:" | xargs sed -i -e "/:target:/s/^/#/" -e "/figure::/s/^/#/"
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# Fix path to var - we install this to the 'real' /var
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grep -rl "\$SPACK_ROOT/var" | xargs sed -i -e "s@\(.*\)\$SPACK_ROOT/var\(/spack.*\)@\1/var/lib\2@g"
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# spack cannot run without knowing at least the compiler
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spack compiler find
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make man info #text dirhtml
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gzip _build/texinfo/Spack.info _build/man/spack.1
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%endif
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%install
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%doc %{S:1}
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%if %{without doc}
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cp %{S:1} .
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# Fix some rpmlint warnings
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## Remove files not required to run spack
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rm -rf lib/spack/spack/test
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rm -rf share/spack/qa
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rm -rf share/spack/logo
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rm -rf var/spack/repos/builtin.mock var/spack/gpg.mock var/spack/mock_configs
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rm -rf lib/spack/external/ruamel/yaml/.ruamel
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find . -type f -name .gitignore -delete
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find . -type f -name .nojekyll -delete
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# Fix _spack_root link
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rm -f lib/spack/docs/_spack_root
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ln -sf ../.. lib/spack/docs/_spack_root
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# Do not ship Docker and container building for now - needs fixing
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rm -rf share/spack/{templates/container}
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rm -rf share/spack/docker/{centos,ubuntu}*.dockerfile
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# Do not ship AWS specifics
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rm -f share/spack/setup-tutorial-env.sh
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# Fix rpmlint warnings
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## No need for the standalone scripts
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rm -f lib/spack/external/macholib/macho_*.py
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## Fix shebangs
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sed -i 's@#!/bin/env sh@#!/bin/bash@' var/spack/repos/builtin/packages/beast-tracer/tracer
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sed -i 's@#!/usr/bin/env bash@#!/bin/bash@' share/spack/docker/package-index/split.sh
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sed -i 's@#!/bin/env sh@#!/bin/bash@' var/spack/repos/builtin/packages/beast-tracer/tracer
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sed -i 's@#! /usr/bin/env bash@ #!/bin/bash@' share/spack/docker/entrypoint.bash
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sed -i 's@#!/usr/bin/env bash@#!/bin/bash@' share/spack/docker/package-index/split.sh
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mkdir -p %{buildroot}%{spack_dir}
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mkdir -p %{buildroot}%{spack_dir}/opt
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mkdir -p %{buildroot}%{spack_dir}/bin
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mkdir -p %{buildroot}%{_datarootdir}/spack
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mkdir -p %{buildroot}%{_datarootdir}/spack/lib/spack
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mkdir -p %{buildroot}%{_datarootdir}/spack/modules
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mkdir -p %{buildroot}%{_localstatedir}/lib/spack
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mkdir -p %{buildroot}%{_localstatedir}/lib/spack/junit-report
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mkdir -p %{buildroot}%{_localstatedir}/cache/spack
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mkdir -p %{buildroot}%{_sysconfdir}/skel/.spack/
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mkdir -p %{buildroot}/%{_bindir}
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# Link avoids having to fix paths
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ln -sf %{buildroot}/%{_localstatedir}/cache/spack %{buildroot}%{_localstatedir}/lib/spack/cache
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# Copy files to corresponding paths
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cp -r etc lib %{buildroot}%{spack_dir}
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cp -r etc %{buildroot}%{_prefix}
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cp -r lib/spack/{env,external,llnl,spack} %{buildroot}%{spack_dir}
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cp -r share/spack/* %{buildroot}%{_datarootdir}/spack
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cp -r var/spack/* %{buildroot}%{_localstatedir}/lib/spack
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cp -r bin/sbang %{buildroot}/%{_bindir}
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cp -r bin/spack* %{buildroot}%{spack_dir}/bin
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cp -r bin/spack* %{buildroot}%{_bindir}/
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cp etc/spack/defaults/config.yaml %{buildroot}%{_sysconfdir}/skel/.spack/
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sed -i 's@\(\sinstall_tree:\).*@\1 ~/spack/packages@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
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# Fix more paths
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sed -i 's@\(\sroot:\) $spack/opt/spack@\1 ~/spack/packages@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
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sed -i 's@\(\ssource_cache:\).*@\1 /var/tmp/$user/spack-cache@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
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sed -i 's@\(\stcl:\).*@\1 ~/spack/modules@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
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sed -i 's@\(\slmod:\).*@\1 ~/spack/lmod@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml
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cat >> %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml <<EOF
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# Timeout in seconds used for downloading sources etc. This only applies
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# to the connection phase and can be increased for slow connections or
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# servers. 0 means no timeout.
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binary_index_root: ~/.spack/indices
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EOF
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# create spack scripts
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echo -e '#!/bin/bash\n\nexec %{spack_dir}bin/$(basename $0) "${1+$@}"' > \
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%{buildroot}%{_bindir}/spack
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chmod 0755 %{buildroot}%{_bindir}/spack
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ln -s spack %{buildroot}%{_bindir}/spack-python
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ln -s %{_bindir}/sbang %{buildroot}%{spack_dir}/bin/sbang
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# compile python files for python3
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# %%{buildroot}%%{spack_dir}/spack
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%py_compile .
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# make shell scripts executeable
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@@ -223,13 +320,24 @@ modules:
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all: '{compiler.name}-{compiler.version}/{name}/{version}'
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^mpi: '{compiler.name}-{compiler.version}/{^mpi.name}-{^mpi.version}/{name}/{version}'
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EOF
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mkdir -p %{buildroot}%{_sysconfdir}/spack
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# Fix link to not point into buildroot
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rm -f %{buildroot}%{_localstatedir}/lib/spack/cache
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ln -sf %{_localstatedir}/cache/spack %{buildroot}%{_localstatedir}/lib/spack/cache
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# Remove problematic binaries which are removed upstream with
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# 0889be20e0d9dcdf4346cdeaa0647285187375f3
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rm -r %{buildroot}%{_localstatedir}/lib/spack/repos/builtin/packages/patchelf/test/
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%fdupes %{buildroot}%{spack_dir}
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%fdupes %{buildroot}%{_datarootdir}/spack
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%fdupes %{buildroot}%{_localstatedir}/lib/spack
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%else
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mkdir -p %{buildroot}%{_infodir}
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mkdir -p %{buildroot}%{_mandir}/man1
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cd lib/spack/docs/_build
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cp man/spack.1.gz %{buildroot}%{_mandir}/man1/
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cp -r texinfo/Spack.info.gz texinfo/Spack-figures %{buildroot}%{_infodir}
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%endif
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%pre
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getent group %spack_group >/dev/null || groupadd -r %spack_group
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@@ -254,16 +362,33 @@ if [ -e /etc/os-release ] ; then
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sed -i "s@SUSE_VERSION@$SPACK_NAME@g" /etc/profile.d/spack.sh
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fi
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sed -i "s@HOSTTYPE@$HOSTTYPE@" %{spack_dir}/etc/spack/compilers.yaml
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# find installed programms
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test -e %{_sysconfdir}/spack/no_rpm_trigger || spack external find --scope system
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%triggerin -- %{?spack_trigger_recommended} %{?spack_trigger_packages} %{?spack_trigger_external}
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test -e %{_sysconfdir}/spack/no_rpm_trigger || spack external find --scope system
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test -e %{_sysconfdir}/spack/no_rpm_trigger || echo "Create %{_sysconfdir}/spack/no_rpm_trigger to stop spack to search for new packages after a rpm install"
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%triggerpostun -- %{?spack_trigger_recommended} %{?spack_trigger_packages} %{?spack_trigger_external}
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test -e %{_sysconfdir}/spack/no_rpm_trigger || rm /etc/spack/packages.yaml
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test -e %{_sysconfdir}/spack/no_rpm_trigger || spack external find --scope system
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test -e %{_sysconfdir}/spack/no_rpm_trigger || echo "Create %{_sysconfdir}/spack/no_rpm_trigger to stop spack to search for new packages after a rpm install"
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%if %{without doc}
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%files
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%license COPYRIGHT LICENSE-APACHE LICENSE-MIT
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%doc CHANGELOG.md NOTICE README.md
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%doc CHANGELOG.md NOTICE README.md README.SUSE
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%dir %{_sysconfdir}/spack/
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%{_bindir}/*
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%if 0%{?suse_version} <= 1500
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%dir %{_prefix}/etc
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%endif
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%{_prefix}/etc/spack
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%attr(0775, root, spack) %{_localstatedir}/lib/spack/junit-report
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%attr(0775, root, spack) %{spack_dir}/opt
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%attr(0775, root, spack) %{_localstatedir}/cache/spack
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%attr(0775, root, spack) %{_datarootdir}/spack/modules
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%{_prefix}/lib/spack
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%{spack_dir}
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%{_localstatedir}/cache/spack
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%{_localstatedir}/lib/spack
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%{_datarootdir}/spack
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@@ -274,11 +399,18 @@ sed -i "s@HOSTTYPE@$HOSTTYPE@" %{spack_dir}/etc/spack/compilers.yaml
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# repos directory is installed in -recipes
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%exclude %{_localstatedir}/lib/spack/repos
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%files recipes
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%license COPYRIGHT LICENSE-APACHE LICENSE-MIT
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%doc CHANGELOG.md NOTICE README.md
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%{_localstatedir}/lib/spack/repos
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%else
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%files man
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%{_mandir}/man1/*
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%files info
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%{_infodir}/*
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%endif
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%changelog
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Reference in New Issue
Block a user