Dmitry Roshchin
d9728ae86a
Update to version 4.5.1 OBS-URL: https://build.opensuse.org/request/show/440883 OBS-URL: https://build.opensuse.org/package/show/science/Genepop?expand=0&rev=2
77 lines
3.3 KiB
Plaintext
77 lines
3.3 KiB
Plaintext
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Fri Nov 18 18:16:44 UTC 2016 - aloisio@gmx.com
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- Update to version 4.5.1
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* A bug was found and corrected in the Mantel test when
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performed after a bootstrap (thanks to Thierry de Meeus for
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spotting discrepancies between Mantel tests).
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4.5:
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* A new keyword inter_all_pairs for setting "popTypeSelection"
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allows one to perform spatial regressions (but not Mantel
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tests) between all pairs of individuals or populations
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belonging to different types (e.g., individuals belonging to
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different patches, excluding pairwise statistics for pairs
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of individuals within patches). The inter-OS input file
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checks have been modfied (again), to address a persistent
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problem on Mac OS X.
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4.4:
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* Mantel tests are by default no longer based on rank
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correlation of the distances, but instead on the correlation
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of the distances. The older rank tests can be performed
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using the new MantelRankTest setting. In addition, a
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MaximalDistance setting has been added, affecting the
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computation of spatial regressions in a way similar to
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MimimalDistance (but this new setting is best ignored in
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normal use).
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4.3:
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* New options 8.5 to retain individual names when converting
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population data to individual data, and 8.6 for generation
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of haploid genotypes by random sampling in diploid
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genotypes. Much code tidying to avoid warnings with stricter
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compilers than vanilla g++..
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4.2.2:
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* Only a cryptic bug fix which won't change any Genepop
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output, and more changes to comply with the clang compiler
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stricter syntax checks.
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4.2.1:
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* More cryptic changes in input file checks (again).
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4.2:
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* One can perform all isolation-by-distance analyses with a
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user-provided distance matrix. Cryptic changes in inter-OS
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input file checks (again) and in the way locus names are
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read, which could previously make Genepop crash.
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4.1.4:
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* Wrong files were included in version 4.1.3. This new release
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corrects for this.
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4.1.3:
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* This version intended to correct two problems with the
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IsolationFile option: the source file was not correctly read
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and (for Windows only) the results when not correctly
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displayed.
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4.1.2:
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* The Windows executables included in version 4.1.1 were not
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portable and this is corrected. The genotypic disequilibrium
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test treated incomplete genotypes as full genotypes and this
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is corrected.
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4.1.1:
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* Again some cryptic changes in inter-OS input file checks;
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correction of a crashing bug for a missing-data case in LD
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testing; but nothing really new in the code. 64-bit
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executables for Windows. (but see version 4.1.2) The
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LINKDOS.exe which was missing from the v.4.1 distribution,
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has been restored.
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- Spec cleanup
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-------------------------------------------------------------------
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Sat Apr 23 01:53:51 UTC 2011 - vimalkumar_v@bioinformatics.org
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- Updated to 4.1
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--------------------------------------------------------------------------------
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* Sat Apr 23 2011 Vimalkumar Velayudhan <vimalkumar_v@bioinformatics.org> - 4.0-2
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- Minor spec file changes
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-------------------------------------------------------------------------------
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* Thu Dec 17 2009 -Vimalkumar Velayudhan <vimalkumar_v@bioinformatics.org> - 4.0-1
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- Initial package created
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