#
# spec file for package dialign
#
# Copyright (c) 2010 SUSE LINUX Products GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# Please submit bugfixes or comments via http://bugs.opensuse.org/
#
# norootforbuild

Name:          dialign
Summary:       Multiple Sequence Alignment Program
Version:       2.2.1
Release:       3
License:       LGPL-2.1
Group:         Productivity/Scientific/Other
BuildRequires: gcc make
Source:        %{name}-%{version}-src.tar.gz
BuildRoot:     %{_tmppath}/%{name}-%{version}-build
URL:           http://bibiserv.techfak.uni-bielefeld.de/dialign/

%description
Dialign2. Multiple alignment of protein or DNA sequences.

Citation:
B. Morgenstern (1999). DIALIGN 2: improvement of the segment-to-segment 
approach to multiple sequence alignment. Bioinformatics 15, 211 - 218.

For more information, updated references etc. please visit the 
DIALIGN home page at http://dialign.gobics.de/

%prep
%setup -n dialign_package

%build
export CFLAGS="$RPM_OPT_FLAGS"
cd src
make %{?_smp_mflags}

%install
mkdir -p %{buildroot}/%{_bindir}
mkdir -p %{buildroot}/%{_datadir}/%{name}
cd src
install -m 755 dialign2-2 %{buildroot}%{_bindir}/dialign2-2
ln -s %{_bindir}/dialign2-2 %{buildroot}/%{_bindir}/dialign
cd ..
cp -rv dialign2_dir/* %{buildroot}/%{_datadir}/%{name}/

#install script to set DIALIGN2_DIR
%{__mkdir_p} %{buildroot}%{_sysconfdir}/profile.d
echo "export DIALIGN2_DIR=%{_datadir}/%{name}/" > %{buildroot}%{_sysconfdir}/profile.d/dialign.sh
echo "setenv DIALIGN2_DIR %{_datadir}/%{name}/" > %{buildroot}%{_sysconfdir}/profile.d/dialign.csh

%clean

%files
%defattr(-,root,root)
%{_bindir}/*                                                          
%doc license INSTALLATION_GUIDE USER_GUIDE
%{_datadir}/%{name}
%config(noreplace) %{_sysconfdir}/profile.d/*

%changelog