Dirk Stoecker
f0426c3c0d
- Drop support for removed openmpi[12] - Move to openmpi4 - Prepare support for openmpi5 OBS-URL: https://build.opensuse.org/request/show/1124198 OBS-URL: https://build.opensuse.org/package/show/science/dolfin?expand=0&rev=27
334 lines
11 KiB
RPMSpec
334 lines
11 KiB
RPMSpec
#
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# spec file for package dolfin
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#
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# Copyright (c) 2023 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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%global flavor @BUILD_FLAVOR@%{nil}
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%if 0%{?sle_version} >= 150200
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%define DisOMPI1 ExclusiveArch: do_not_build
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%endif
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%if !0%{?is_opensuse} && 0%{?sle_version:1} && 0%{?sle_version} < 150200
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%define DisOMPI3 ExclusiveArch: do_not_build
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%endif
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# Disable petsc/slepc for now, dolfin is incompatible with current petsc
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%bcond_with petsc
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# Disable parmetis for now, dolfin is incompatible with current parmetis
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%bcond_with parmetis
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# Trilinos cmake files are defect, disable for now
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%bcond_with trilinos
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# Bindings have been changed to pybind11, recheck
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%bcond_with python
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%define sname dolfin
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%define lname libdolfin2019_1
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%if "%flavor" == ""
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%define package_name %{sname}
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ExclusiveArch: do_not_build
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%endif
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%if "%flavor" == "documentation"
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%define package_name %{sname}-documentation
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%endif
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%if "%flavor" == "serial"
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%define my_prefix %{_prefix}
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%endif
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%if "%flavor" == "openmpi4"
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%define mpi_family openmpi
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%define mpi_ver 4
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%endif
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%if "%flavor" == "openmpi5"
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%define mpi_family openmpi
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%define mpi_ver 5
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%endif
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%define mpi_ext %{?mpi_ver}
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%if 0%{?mpi_family:1}
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%{bcond_without mpi}
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%define my_prefix %{_libdir}/mpi/gcc/%{mpi_family}%{?mpi_ext}
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%else
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%{bcond_with mpi}
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%endif
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%if 0%{!?package_name:1}
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%define package_name %{sname}%{?with_mpi:-%{mpi_family}%{?mpi_ext}}
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%endif
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%define lib_name %{lname}%{?with_mpi:-%{mpi_family}%{?mpi_ext}}
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Name: %{package_name}
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Version: 2019.1.0.post0
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%global main_version 2019.1.0
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Release: 0
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Summary: An open source CFD software
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License: LGPL-3.0-or-later
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Group: Development/Libraries/C and C++
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Url: https://fenicsproject.org/
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Source0: https://bitbucket.org/fenics-project/%{sname}/downloads/%{sname}-%{version}.tar.gz
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# PATCH-FIX-OPENSUSE
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Patch0: 0001-Fix-linker-error-due-to-missing-lpthread.patch
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# PATCH-FIX-OPENSUSE -- https://bitbucket.org/fenics-project/dolfin/issues/1115/compile-error-min_element-is-not-member-of
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Patch1: 0001-Add-missing-algorithm-include-for-std-min_element-co.patch
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# PATCH-FIX-OPENSUSE -- https://bitbucket.org/fenics-project/dolfin/issues/1116/boost-detail-endianhpp-no-longer-available
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Patch2: 0001-Use-__BYTE_ORDER__-instead-of-removed-Boost-endian.h.patch
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# PATCH-FIX-OPENSUSE
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Patch3: 0001-Use-correct-type-for-index_to_position-value-tempora.patch
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BuildRequires: fdupes
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%if "%{flavor}" != "documentation"
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BuildRequires: libboost_filesystem-devel
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BuildRequires: libboost_chrono-devel
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BuildRequires: libboost_headers-devel >= 1.56
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BuildRequires: libboost_iostreams-devel
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BuildRequires: libboost_program_options-devel
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BuildRequires: libboost_regex-devel
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BuildRequires: libboost_system-devel
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BuildRequires: libboost_timer-devel
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BuildRequires: cmake >= 3.5
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BuildRequires: cppunit-devel
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BuildRequires: eigen3-devel >= 3.2.90
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BuildRequires: gcc-c++
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BuildRequires: gmp-devel
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BuildRequires: hdf5%{?with_mpi:-%{mpi_family}%{?mpi_ext}}-devel
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BuildRequires: lapack-devel
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BuildRequires: libxml2-devel
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BuildRequires: hwloc-devel
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BuildRequires: pkg-config
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BuildRequires: python3-FFC = %{main_version}
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BuildRequires: python3-FIAT = %{main_version}
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BuildRequires: python3-setuptools
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BuildRequires: python3-ufl = %{main_version}
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%if %{with python}
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BuildRequires: python3-pybind11
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%endif
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BuildRequires: suitesparse-devel
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%if %{with trilinos}
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BuildRequires: trilinos%{?with_mpi:-%{mpi_family}%{?mpi_ext}}-devel >= 12.4.0
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%endif
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%if %{with petsc}
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BuildRequires: petsc%{?with_mpi:-%{mpi_family}%{?mpi_ext}}-devel >= 3.7
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BuildRequires: slepc%{?with_mpi:-%{mpi_family}%{?mpi_ext}}-devel
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%endif
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%if %{with mpi}
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BuildRequires: Modules
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BuildRequires: %{mpi_family}%{?mpi_ext}-devel
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BuildRequires: ptscotch-%{mpi_family}%{?mpi_ext}-devel
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%if %{with parmetis}
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BuildRequires: ptscotch-parmetis-%{mpi_family}%{?mpi_ext}-devel >= 4.0.2
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%endif
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#!BuildIgnore: metis-devel
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Requires: %{mpi_family}%{?mpi_ext}
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%endif
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%else
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BuildRequires: doxygen
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BuildRequires: graphviz
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%endif
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%description
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dolphin is an open source CFD software (FLOW solvER, literally)
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written in C++. It is mainly devoted to the resolution of the
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turbulent unsteady incompressible Navier-Stokes equations.
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%package devel
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Summary: Development and header files for %{name}
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Group: Development/Libraries/C and C++
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Provides: pkgconfig(DOLFIN)
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Provides: %{name}-devel = %{main_version}
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Requires: eigen3-devel
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Requires: lapack-devel
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Requires: libboost_headers-devel
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Requires: %{lib_name} = %{version}
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Requires: libxml2-devel
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%if %{with mpi}
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Requires: %{mpi_family}%{?mpi_ext}-devel
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Requires: pastix%{?with_mpi:-%{mpi_family}%{?mpi_ext}}-devel
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Requires: ptscotch-%{mpi_family}%{?mpi_ext}-devel
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%endif
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%if %{with petsc}
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Requires: petsc%{?with_mpi:-%{mpi_family}%{?mpi_ext}}-devel
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Requires: slepc%{?with_mpi:-%{mpi_family}%{?mpi_ext}}-devel
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%endif
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Requires: suitesparse-devel
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%description devel
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The %{name}-devel package contains header files for developing
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applications that use %{name}.
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%package -n %{lib_name}
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Summary: A package for solving large sparse systems of linear equations
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Group: System/Libraries
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%description -n %{lib_name}
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dolphin is an open source CFD software (FLOW solvER, literally)
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written in C++. It is mainly devoted to the resolution of the
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turbulent unsteady incompressible Navier-Stokes equations.
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%package -n python3-dolfin_utils%{?with_mpi:-%{mpi_family}%{?mpi_ext}}
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Summary: A package for solving large sparse systems of linear equations
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Group: Development/Languages/Python
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Provides: python3-dolfin_utils = %{main_version}
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Obsoletes: python3-dolfin_utils < %{main_version}
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Provides: python3-dolfin_utils = %{version}
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%description -n python3-dolfin_utils%{?with_mpi:-%{mpi_family}%{?mpi_ext}}
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dolphin is an open source CFD software (FLOW solvER, literally)
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written in C++. It is mainly devoted to the resolution of the
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turbulent unsteady incompressible Navier-Stokes equations.
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%package -n python3-dolfin%{?with_mpi:-%{mpi_family}%{?mpi_ext}}
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Summary: A package for solving large sparse systems of linear equations
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Group: Development/Languages/Python
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Requires: python3-FFC = %{main_version}
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Requires: python3-FIAT = %{main_version}
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Requires: python3-sympy
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Requires: python3-dolfin_utils%{?with_mpi:-%{mpi_family}%{?mpi_ext}} = %{version}
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%{?with_mpi:Requires: python3-mpi4py}
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Requires: python3-ply
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Requires: python3-ufl = %{main_version}
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Provides: python3-dolfin = %{main_version}
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Obsoletes: python3-dolfin < %{main_version}
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Provides: python3-dolfin = %{version}
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%description -n python3-dolfin%{?with_mpi:-%{mpi_family}%{?mpi_ext}}
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dolphin is an open source CFD software (FLOW solvER, literally)
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written in C++. It is mainly devoted to the resolution of the
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turbulent unsteady incompressible Navier-Stokes equations.
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This package contains the python-dolfin module.
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%package doc
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Summary: Documentation files for %{name}
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Group: Documentation/HTML
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BuildArch: noarch
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%description doc
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The %{name}-doc package contains documentation files for developing
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applications that use %{name}.
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%prep
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%autosetup -p1 -n %{sname}-%{version}
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%build
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%if "%{flavor}" != "documentation"
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%if %{with petsc}
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%define petsc_ver %(rpm -q petsc%{?with_mpi:-%{mpi_family}%{?mpi_ext}}-devel --queryformat %%{VERSION})
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# PETSC_DIR/SLEPC_DIR have to be set in the environment
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export PETSC_DIR=%{my_prefix}/%_lib/petsc/%{petsc_ver}/linux-gnu-c-opt
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export SLEPC_DIR=%{my_prefix}/%_lib/slepc/%{petsc_ver}/linux-gnu-c-opt
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%endif
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export PKG_CONFIG_PATH=%{my_prefix}/%_lib/pkgconfig:$PKG_CONFIG_PATH
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%define hdf5bin %{?with_mpi:h5p}%{!?with_mpi:h5}
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# Force usage of HDF5 1.10 API
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export CXXFLAGS="-DH5_USE_110_API %optflags"
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%cmake -DCMAKE_INSTALL_PREFIX=%{my_prefix} \
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-DCMAKE_EXE_LINKER_FLAGS="-L%{my_prefix}/%_lib" \
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-DDOLFIN_LIB_DIR:PATH="%_lib" \
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-DDOLFIN_PKGCONFIG_DIR:PATH="%_lib/pkgconfig" \
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-DDOLFIN_ENABLE_MPI:BOOL=%{?with_mpi:ON}%{!?with_mpi:OFF} \
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-DDOLFIN_ENABLE_PARMETIS:BOOL=%{?with_parmetis:ON}%{!?with_parmetis:OFF} \
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-DDOLFIN_ENABLE_SCOTCH:BOOL=ON \
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-DDOLFIN_ENABLE_TRILINOS:BOOL=%{?with_trilinos:ON}%{!?with_trilinos:OFF} \
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-DHDF5_C_COMPILER_EXECUTABLE=%{my_prefix}/bin/%{hdf5bin}cc \
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-DHDF5_CXX_COMPILER_EXECUTABLE=%{my_prefix}/bin/%{hdf5bin}cc \
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-DHDF5_Fortran_COMPILER_EXECUTABLE=%{my_prefix}/bin/%{hdf5bin}fc \
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-DHDF5_DIFF_EXECUTABLE=%{my_prefix}/bin/h5diff \
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-DSCOTCH_LIBRARY=%{my_prefix}/%_lib/libscotch.so \
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-DSCOTCH_INCLUDE_DIRS=%{my_prefix}/include \
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-DPTSCOTCHERR_LIBRARY=%{my_prefix}/%_lib/libptscotcherr.so \
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-DPTSCOTCH_LIBRARY=%{my_prefix}/%_lib/libptscotch.so \
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-DDOLFIN_SKIP_BUILD_TESTS:BOOL=ON \
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..
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%cmake_build
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%else
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(cd doc; doxygen -u && doxygen)
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%endif
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%install
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%if "%{flavor}" != "documentation"
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%cmake_install
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%fdupes -s %{buildroot}%{my_prefix}/share/%{sname}
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sed -i -e '1 s#/usr/bin/env python#/usr/bin/python#' %{buildroot}%{my_prefix}/bin/*
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%else
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mkdir -p %{buildroot}%{_docdir}/%{sname}-devel
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cp -ar doc/html %{buildroot}%{_docdir}/%{sname}-devel/
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%fdupes -s %{buildroot}%{_docdir}/%{sname}-devel
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%endif
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%check
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%if %{with python} && "%{flavor}" != "documentation"
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export PYTHONPATH=%{buildroot}%{my_prefix}/lib/python%{py3_ver}/site-packages:%{buildroot}%{my_prefix}/%_lib/python%{py3_ver}/site-packages
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export LD_LIBRARY_PATH=%{buildroot}%{my_prefix}/%{_lib}:%{my_prefix}/%{_lib}
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python3 -c "import dolfin"
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%endif
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%post -n %{lib_name} -p /sbin/ldconfig
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%postun -n %{lib_name} -p /sbin/ldconfig
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%if "%{flavor}" != "documentation"
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%files
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%license COPYING COPYING.LESSER
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%doc AUTHORS ChangeLog.rst README.rst
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%{my_prefix}/bin/*
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%if %{with python}
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%files -n python3-dolfin_utils%{?with_mpi:-%{mpi_family}%{?mpi_ext}}
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%if "%{my_prefix}" != "%{_prefix}"
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%if "%{_lib}" != "lib"
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%dir %{my_prefix}/lib
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%endif
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%dir %{my_prefix}/lib/python%{py3_ver}
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%dir %{my_prefix}/lib/python%{py3_ver}/site-packages
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%endif
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%{my_prefix}/lib/python%{py3_ver}/site-packages/dolfin_utils
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%files -n python3-dolfin%{?with_mpi:-%{mpi_family}%{?mpi_ext}}
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%dir %{my_prefix}/%_lib/python%{py3_ver}
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%dir %{my_prefix}/%_lib/python%{py3_ver}/site-packages
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%{my_prefix}/%_lib/python%{py3_ver}/site-packages/dolfin
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%{my_prefix}/%_lib/python%{py3_ver}/site-packages/fenics
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%endif
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%files -n %{lib_name}
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%{my_prefix}/%_lib/*.so.*
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%files devel
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%if "%{my_prefix}" != "%{_prefix}"
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%dir %{my_prefix}/%_lib/pkgconfig
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%endif
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%{my_prefix}/include/*
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%{my_prefix}/%_lib/*.so
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%{my_prefix}/share/%{sname}
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%{my_prefix}/%_lib/pkgconfig/*.pc
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%else
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%files doc
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%{_docdir}/%{sname}-devel
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%endif
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%changelog
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