Atri Bhattacharya
b470635e8f
package Java and port patches from Fedora OBS-URL: https://build.opensuse.org/request/show/857131 OBS-URL: https://build.opensuse.org/package/show/science/hdf?expand=0&rev=40
717 lines
27 KiB
RPMSpec
717 lines
27 KiB
RPMSpec
#
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# spec file for package hdf
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#
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# Copyright (c) 2020 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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%if 0%{?sles_version}
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%define _mvapich2 1
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%endif
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%if 0%{?suse_version}
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%define _openmpi 1
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%endif
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Name: hdf
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%define libname libhdf
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Version: 4.2.15
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Release: 0
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%define sonum 4
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Summary: Command-line programs for the HDF4 scientific data format
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License: BSD-4-Clause
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Group: Productivity/Scientific/Other
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URL: http://www.hdfgroup.org/products/hdf4/
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Source0: https://support.hdfgroup.org/ftp/HDF/releases/HDF%{version}/src/hdf-%{version}.tar.bz2
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Source99: baselibs.conf
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Patch1: hdf-ppc.patch
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Patch2: hdf-4.2.4-sparc.patch
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Patch3: hdf-s390.patch
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Patch4: hdf-arm.patch
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Patch8: hdf-aarch64.patch
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Patch9: hdf-ppc64le.patch
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Patch11: hdf-build.patch
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BuildRoot: %{_tmppath}/%{name}-%{version}-build
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BuildRequires: bison
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BuildRequires: bzip2
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BuildRequires: cmake >= 2.8.11
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BuildRequires: flex
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BuildRequires: gcc
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BuildRequires: gcc-c++
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BuildRequires: libjpeg-devel
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BuildRequires: libtirpc-devel
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BuildRequires: pkgconfig
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BuildRequires: zlib-devel
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%if 0%{?_openmpi}
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BuildRequires: openmpi-devel
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BuildRequires: openmpi-macros-devel
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%endif
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%if 0%{?_mvapich2}
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BuildRequires: mvapich2-devel
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%endif
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%if 0%{?suse_version}
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BuildRequires: gcc-fortran
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%else
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BuildRequires: gcc-gfortran
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%endif
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BuildRequires: hamcrest
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BuildRequires: java-devel
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BuildRequires: javapackages-tools
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BuildRequires: junit
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BuildRequires: slf4j
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Requires: %{libname}%{sonum} = %{version}
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%description
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HDF4 (also known as HDF) is a library and multi-object file format for
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storing and managing data between machines. There are two versions of
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HDF technologies that are completely different: HDF4 and HDF5. HDF4 is
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the first HDF format.
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At its lowest level, HDF4 is a physical file format for storing scientific
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data. At its highest level, HDF4 is a collection of utilities and
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applications for manipulating, viewing, and analyzing data in HDF4 files.
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Between these levels, HDF4 is a software library that provides high-level
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APIs and a low-level data interface.
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This is the legacy version HDF4. Although it is still maintained, new
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users that are not constrained to using HDF4, should use HDF5 instead.
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This package contains utility functions for working with HDF4 files.
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%package openmpi
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Summary: Command-line programs for the HDF4 scientific data format
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Group: Productivity/Scientific/Other
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Requires: %{libname}%{sonum}-openmpi = %{version}
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%description openmpi
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HDF4 (also known as HDF) is a library and multi-object file format for
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storing and managing data between machines. There are two versions of
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HDF technologies that are completely different: HDF4 and HDF5. HDF4 is
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the first HDF format.
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At its lowest level, HDF is a physical file format for storing scientific
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data. At its highest level, HDF is a collection of utilities and
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applications for manipulating, viewing, and analyzing data in HDF files.
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Between these levels, HDF is a software library that provides high-level
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APIs and a low-level data interface.
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This is the legacy version HDF4. Although it is still maintained, new
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users that are not constrained to using HDF4, should use HDF5 instead.
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This package contains the openmpi version of utility functions for
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working with HDF files.
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%package mvapich2
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Summary: Command-line programs for the HDF4 scientific data format
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Group: Productivity/Scientific/Other
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Requires: %{libname}%{sonum}-mvapich2 = %{version}
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%description mvapich2
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HDF4 (also known as HDF) is a library and multi-object file format for
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storing and managing data between machines. There are two versions of
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HDF technologies that are completely different: HDF4 and HDF5. HDF4 is
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the first HDF format.
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At its lowest level, HDF4 is a physical file format for storing scientific
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data. At its highest level, HDF4 is a collection of utilities and
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applications for manipulating, viewing, and analyzing data in HDF4 files.
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Between these levels, HDF4 is a software library that provides high-level
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|
APIs and a low-level data interface.
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This is the legacy version HDF4. Although it is still maintained, new
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users that are not constrained to using HDF4, should use HDF5 instead.
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This package contains the mvapich2 version of utility functions for
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working with HDF4 files.
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%package -n %{libname}%{sonum}
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Summary: Shared libraries for the HDF4 scientific data format
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# To avoid unresolvable errors due to multiple providers of the library
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Group: Productivity/Scientific/Other
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Provides: %{libname} = %{version}
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Obsoletes: %{libname} < %{version}
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%description -n %{libname}%{sonum}
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HDF4 (also known as HDF) is a library and multi-object file format for
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storing and managing data between machines. There are two versions of
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HDF technologies that are completely different: HDF4 and HDF5. HDF4 is
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|
the first HDF format.
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|
At its lowest level, HDF4 is a physical file format for storing scientific
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data. At its highest level, HDF4 is a collection of utilities and
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applications for manipulating, viewing, and analyzing data in HDF4 files.
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Between these levels, HDF4 is a software library that provides high-level
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|
APIs and a low-level data interface.
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This is the legacy version HDF4. Although it is still maintained, new
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users that are not constrained to using HDF4, should use HDF5 instead.
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This package contains the HDF4 runtime libraries.
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%package -n %{libname}%{sonum}-openmpi
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Summary: Shared libraries for the HDF4 scientific data format
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# To avoid unresolvable errors due to multiple providers of the library
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Group: Productivity/Scientific/Other
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Provides: %{libname}-openmpi = %{version}
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Obsoletes: %{libname}-openmpi < %{version}
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%description -n %{libname}%{sonum}-openmpi
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HDF4 (also known as HDF) is a library and multi-object file format for
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storing and managing data between machines. There are two versions of
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|
HDF technologies that are completely different: HDF4 and HDF5. HDF4 is
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|
the first HDF format.
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|
At its lowest level, HDF4 is a physical file format for storing scientific
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data. At its highest level, HDF4 is a collection of utilities and
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applications for manipulating, viewing, and analyzing data in HDF4 files.
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|
Between these levels, HDF4 is a software library that provides high-level
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|
APIs and a low-level data interface.
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|
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|
This is the legacy version HDF4. Although it is still maintained, new
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users that are not constrained to using HDF4, should use HDF5 instead.
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This package contains the openmpi version of the HDF4 runtime libraries.
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%package -n %{libname}%{sonum}-mvapich2
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Summary: Shared libraries for the HDF4 scientific data format
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# To avoid unresolvable errors due to multiple providers of the library
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Group: Productivity/Scientific/Other
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Provides: %{libname}-mvapich2 = %{version}
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Obsoletes: %{libname}-mvapich2 < %{version}
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%description -n %{libname}%{sonum}-mvapich2
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HDF4 (also known as HDF) is a library and multi-object file format for
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storing and managing data between machines. There are two versions of
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HDF technologies that are completely different: HDF4 and HDF5. HDF4 is
|
|
the first HDF format.
|
|
|
|
At its lowest level, HDF4 is a physical file format for storing scientific
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|
data. At its highest level, HDF4 is a collection of utilities and
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|
applications for manipulating, viewing, and analyzing data in HDF4 files.
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|
Between these levels, HDF4 is a software library that provides high-level
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|
APIs and a low-level data interface.
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This is the legacy version HDF4. Although it is still maintained, new
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users that are not constrained to using HDF4, should use HDF5 instead.
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This package contains the mvapich2 version of the HDF4 runtime libraries.
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%package devel-data
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Summary: Development data files for %{name}
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Group: Development/Libraries/Other
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%description devel-data
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HDF4 (also known as HDF) is a library and multi-object file format for
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storing and managing data between machines. There are two versions of
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HDF technologies that are completely different: HDF4 and HDF5. HDF4 is
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|
the first HDF format.
|
|
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|
At its lowest level, HDF4 is a physical file format for storing scientific
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|
data. At its highest level, HDF4 is a collection of utilities and
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applications for manipulating, viewing, and analyzing data in HDF4 files.
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|
Between these levels, HDF4 is a software library that provides high-level
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APIs and a low-level data interface.
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This is the legacy version HDF4. Although it is still maintained, new
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users that are not constrained to using HDF4, should use HDF5 instead.
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This package contains generic files needed to create projects that use
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any version of HDF4.
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%package devel
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Summary: Development files for %{name}
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Group: Development/Libraries/C and C++
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Requires: %{libname}%{sonum} = %{version}
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Requires: %{name}-devel-data = %{version}
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Requires: libjpeg-devel
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Requires: zlib-devel
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%description devel
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HDF4 (also known as HDF) is a library and multi-object file format for
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storing and managing data between machines. There are two versions of
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HDF technologies that are completely different: HDF4 and HDF5. HDF4 is
|
|
the first HDF format.
|
|
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|
At its lowest level, HDF4 is a physical file format for storing scientific
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data. At its highest level, HDF4 is a collection of utilities and
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|
applications for manipulating, viewing, and analyzing data in HDF4 files.
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|
Between these levels, HDF4 is a software library that provides high-level
|
|
APIs and a low-level data interface.
|
|
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|
This is the legacy version HDF4. Although it is still maintained, new
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users that are not constrained to using HDF4, should use HDF5 instead.
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This package contains all files needed to create projects that use HDF4.
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%package openmpi-devel
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Summary: Development files for %{name}-openmpi
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Group: Development/Libraries/Parallel
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Requires: %{libname}%{sonum}-openmpi = %{version}
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Requires: %{name}-devel-data = %{version}
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Requires: libjpeg-devel
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Requires: zlib-devel
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%description openmpi-devel
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HDF4 (also known as HDF) is a library and multi-object file format for
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storing and managing data between machines. There are two versions of
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HDF technologies that are completely different: HDF4 and HDF5. HDF4 is
|
|
the first HDF format.
|
|
|
|
At its lowest level, HDF4 is a physical file format for storing scientific
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|
data. At its highest level, HDF4 is a collection of utilities and
|
|
applications for manipulating, viewing, and analyzing data in HDF4 files.
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|
Between these levels, HDF4 is a software library that provides high-level
|
|
APIs and a low-level data interface.
|
|
|
|
This is the legacy version HDF4. Although it is still maintained, new
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|
users that are not constrained to using HDF4, should use HDF5 instead.
|
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This package contains all files needed to create projects that use
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the openmpi version of HDF4.
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%package mvapich2-devel
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Summary: Development files for %{name}-mvapich2
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Group: Development/Libraries/Parallel
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Requires: %{libname}%{sonum}-mvapich2 = %{version}
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Requires: %{name}-devel-data = %{version}
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Requires: libjpeg-devel
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Requires: zlib-devel
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%description mvapich2-devel
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HDF4 (also known as HDF) is a library and multi-object file format for
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storing and managing data between machines. There are two versions of
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|
HDF technologies that are completely different: HDF4 and HDF5. HDF4 is
|
|
the first HDF format.
|
|
|
|
At its lowest level, HDF4 is a physical file format for storing scientific
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|
data. At its highest level, HDF4 is a collection of utilities and
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|
applications for manipulating, viewing, and analyzing data in HDF4 files.
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|
Between these levels, HDF4 is a software library that provides high-level
|
|
APIs and a low-level data interface.
|
|
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|
This is the legacy version HDF4. Although it is still maintained, new
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|
users that are not constrained to using HDF4, should use HDF5 instead.
|
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This package contains all files needed to create projects that use
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the mvapich2 version of HDF4.
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%package devel-static
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Summary: Static development files for %{name}
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Group: Development/Libraries/Other
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Requires: %{name}-devel = %{version}
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%description devel-static
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HDF4 (also known as HDF) is a library and multi-object file format for
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storing and managing data between machines. There are two versions of
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|
HDF technologies that are completely different: HDF4 and HDF5. HDF4 is
|
|
the first HDF format.
|
|
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|
At its lowest level, HDF4 is a physical file format for storing scientific
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|
data. At its highest level, HDF4 is a collection of utilities and
|
|
applications for manipulating, viewing, and analyzing data in HDF4 files.
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|
Between these levels, HDF4 is a software library that provides high-level
|
|
APIs and a low-level data interface.
|
|
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|
This is the legacy version HDF4. Although it is still maintained, new
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users that are not constrained to using HDF4, should use HDF5 instead.
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This package provides the static libraries for HDF4.
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%package openmpi-devel-static
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Summary: Static development files for %{name}-openmpi
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Group: Development/Libraries/Parallel
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Requires: %{name}-openmpi-devel = %{version}
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%description openmpi-devel-static
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HDF4 (also known as HDF) is a library and multi-object file format for
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storing and managing data between machines. There are two versions of
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|
HDF technologies that are completely different: HDF4 and HDF5. HDF4 is
|
|
the first HDF format.
|
|
|
|
At its lowest level, HDF4 is a physical file format for storing scientific
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|
data. At its highest level, HDF4 is a collection of utilities and
|
|
applications for manipulating, viewing, and analyzing data in HDF4 files.
|
|
Between these levels, HDF4 is a software library that provides high-level
|
|
APIs and a low-level data interface.
|
|
|
|
This is the legacy version HDF4. Although it is still maintained, new
|
|
users that are not constrained to using HDF4, should use HDF5 instead.
|
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This package provides the static libraries for the openmpi version of HDF4.
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%package mvapich2-devel-static
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Summary: Static development files for %{name}-mvapich2
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Group: Development/Libraries/Parallel
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Requires: %{name}-mvapich2-devel = %{version}
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%description mvapich2-devel-static
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HDF4 (also known as HDF) is a library and multi-object file format for
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|
storing and managing data between machines. There are two versions of
|
|
HDF technologies that are completely different: HDF4 and HDF5. HDF4 is
|
|
the first HDF format.
|
|
|
|
At its lowest level, HDF4 is a physical file format for storing scientific
|
|
data. At its highest level, HDF4 is a collection of utilities and
|
|
applications for manipulating, viewing, and analyzing data in HDF4 files.
|
|
Between these levels, HDF4 is a software library that provides high-level
|
|
APIs and a low-level data interface.
|
|
|
|
This is the legacy version HDF4. Although it is still maintained, new
|
|
users that are not constrained to using HDF4, should use HDF5 instead.
|
|
|
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This package provides the static libraries for the mvapich2 version of HDF4.
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%package -n java-hdf
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Summary: HDF4 java library
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Group: Development/Libraries/Java
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Requires: slf4j
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Obsoletes: jhdf < 3.3.1-2
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%description -n java-hdf
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HDF4 (also known as HDF) is a library and multi-object file format for
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storing and managing data between machines. There are two versions of
|
|
HDF technologies that are completely different: HDF4 and HDF5. HDF4 is
|
|
the first HDF format.
|
|
|
|
At its lowest level, HDF4 is a physical file format for storing scientific
|
|
data. At its highest level, HDF4 is a collection of utilities and
|
|
applications for manipulating, viewing, and analyzing data in HDF4 files.
|
|
Between these levels, HDF4 is a software library that provides high-level
|
|
APIs and a low-level data interface.
|
|
|
|
This is the legacy version HDF4. Although it is still maintained, new
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users that are not constrained to using HDF4, should use HDF5 instead.
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This package provides the Java library.
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%prep
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%autosetup -p1
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# Replace jars with system versions
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find -name \*.jar -delete
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ln -s %{_javadir}/hamcrest/core.jar java/lib/hamcrest-core.jar
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ln -s %{_javadir}/junit.jar java/lib/junit.jar
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ln -s %{_javadir}/slf4j/api.jar java/lib/slf4j-api-1.7.25.jar
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ln -s %{_javadir}/slf4j/nop.jar java/lib/ext/slf4j-nop-1.7.25.jar
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ln -s %{_javadir}/slf4j/simple.jar java/lib/ext/slf4j-simple-1.7.25.jar
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# Fix test output
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junit_ver=$(sed -n '/<version>/{s/^.*>\([0-9]\.[0-9]*\)<.*/\1/;p;q}' /usr/share/maven-poms/junit.pom)
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sed -i -e "s/JUnit version .*/JUnit version $junit_ver/" java/test/testfiles/JUnit-*.txt
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%define _mpi %{?_openmpi:%(grep openmpi_prefix /etc/rpm/macros.openmpi | sed -E 's|.*gcc/(openmpi.*)|\\1|')} %{?_mvapich2:mvapich2}
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for mpi in %_mpi;
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do
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mkdir build_$mpi
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mkdir build_static_$mpi
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done
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mkdir build_static
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%build
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%global _lto_cflags %{_lto_cflags} -ffat-lto-objects
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# workaround for GCC 10
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%if 0%{?suse_version} > 1500
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%global optflags %{optflags} -fallow-argument-mismatch
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%endif
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for mpi in %_mpi;
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do
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# parallel static library
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pushd build_static_$mpi
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export CC="%{_libdir}/mpi/gcc/$mpi/bin/mpicc"
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export CXX="%{_libdir}/mpi/gcc/$mpi/bin/mpic++"
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export FC="%{_libdir}/mpi/gcc/$mpi/bin/mpif90"
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export F77="%{_libdir}/mpi/gcc/$mpi/bin/mpif77"
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export LD_LIBRARY_PATH="%{_libdir}/mpi/gcc/$mpi/%{_lib}"
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cmake .. \
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-DCMAKE_INSTALL_PREFIX:PATH=%{_libdir}/mpi/gcc/$mpi \
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-DHDF4_INSTALL_LIB_DIR:PATH=%{_libdir}/mpi/gcc/$mpi/%{_lib} \
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-DHDF4_INSTALL_BIN_DIR:PATH=%{_libdir}/mpi/gcc/$mpi/bin \
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-DHDF4_INSTALL_TOOLS_BIN_DIR:PATH=%{_libdir}/mpi/gcc/$mpi/bin \
|
|
-DHDF4_INSTALL_UTILS_BIN_DIR:PATH=%{_libdir}/mpi/gcc/$mpi/bin \
|
|
-DHDF4_INSTALL_INCLUDE_DIR:PATH=%{_libdir}/mpi/gcc/$mpi/include \
|
|
-DHDF4_INSTALL_DATA_DIR:PATH=%{_libdir}/mpi/gcc/$mpi/share \
|
|
-DHDF4_INSTALL_CMAKE_DIR:PATH=%{_libdir}/mpi/gcc/$mpi/share/cmake/Modules/ \
|
|
-DHDF4_INSTALL_JAR_DIR:PATH=%{_jnidir} \
|
|
-DCMAKE_BUILD_TYPE=Release \
|
|
-DCMAKE_C_COMPILER:PATH=%{_libdir}/mpi/gcc/$mpi/bin/mpicc \
|
|
-DCMAKE_C_FLAGS="${CFLAGS:-%optflags} -DNDEBUG" \
|
|
-DCMAKE_CXX_COMPILER:PATH=%{_libdir}/mpi/gcc/$mpi/bin/mpic++ \
|
|
-DCMAKE_CXX_FLAGS="${CXXFLAGS:-%optflags} -DNDEBUG" \
|
|
-DCMAKE_Fortran_FLAGS="${FFLAGS:-%optflags%{?_fmoddir: -I%_fmoddir}} -DNDEBUG" \
|
|
-DCMAKE_EXE_LINKER_FLAGS="-Wl,--as-needed -Wl,--no-undefined -Wl,-z,now -ltirpc" \
|
|
-DCMAKE_MODULE_LINKER_FLAGS="-Wl,--as-needed -Wl,--no-undefined -Wl,-z,now -ltirpc" \
|
|
-DCMAKE_SHARED_LINKER_FLAGS="-Wl,--as-needed -Wl,--no-undefined -Wl,-z,now -ltirpc" \
|
|
-DCMAKE_SKIP_RPATH:BOOL=ON \
|
|
-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \
|
|
-DBUILD_SHARED_LIBS:BOOL=OFF \
|
|
-DBUILD_STATIC_LIBS:BOOL=ON \
|
|
-DCMAKE_COLOR_MAKEFILE:BOOL=OFF \
|
|
-DCMAKE_INSTALL_DO_STRIP:BOOL=OFF \
|
|
-DCMAKE_BUILD_TYPE:STRING=Release \
|
|
-DHDF4_BUILD_TOOLS:BOOL=OFF \
|
|
-DHDF4_BUILD_UTILS:BOOL=OFF \
|
|
-DHDF4_ENABLE_NETCDF:BOOL=OFF \
|
|
-DBUILD_TESTING:BOOL=ON \
|
|
-DHDF4_ENABLE_PARALLEL:BOOL=ON \
|
|
%if "%{?_lib}" == "lib64"
|
|
-DLIB_SUFFIX=64
|
|
%endif
|
|
|
|
make %{?_smp_mflags}
|
|
popd
|
|
|
|
# parallel shared library
|
|
pushd build_$mpi
|
|
export CC="%{_libdir}/mpi/gcc/$mpi/bin/mpicc"
|
|
export CXX="%{_libdir}/mpi/gcc/$mpi/bin/mpic++"
|
|
export FC="%{_libdir}/mpi/gcc/$mpi/bin/mpif90"
|
|
export F77="%{_libdir}/mpi/gcc/$mpi/bin/mpif77"
|
|
export LD_LIBRARY_PATH="%{_libdir}/mpi/gcc/$mpi/%{_lib}"
|
|
cmake .. \
|
|
-DCMAKE_INSTALL_PREFIX:PATH=%{openmpi_prefix} \
|
|
-DHDF4_INSTALL_LIB_DIR:PATH=%{_libdir}/mpi/gcc/$mpi/%{_lib} \
|
|
-DHDF4_INSTALL_BIN_DIR:PATH=%{_libdir}/mpi/gcc/$mpi/bin \
|
|
-DHDF4_INSTALL_TOOLS_BIN_DIR:PATH=%{_libdir}/mpi/gcc/$mpi/bin \
|
|
-DHDF4_INSTALL_UTILS_BIN_DIR:PATH=%{_libdir}/mpi/gcc/$mpi/bin \
|
|
-DHDF4_INSTALL_INCLUDE_DIR:PATH=%{_libdir}/mpi/gcc/$mpi/include \
|
|
-DHDF4_INSTALL_DATA_DIR:PATH=%{_libdir}/mpi/gcc/$mpi/share \
|
|
-DHDF4_INSTALL_CMAKE_DIR:PATH=%{_libdir}/mpi/gcc/$mpi/share/cmake/Modules/ \
|
|
-DHDF4_INSTALL_JAR_DIR:PATH=%{_jnidir} \
|
|
-DCMAKE_BUILD_TYPE=Release \
|
|
-DCMAKE_C_COMPILER:PATH=%{_libdir}/mpi/gcc/$mpi/bin/mpicc \
|
|
-DCMAKE_C_FLAGS="${CFLAGS:-%optflags} -DNDEBUG" \
|
|
-DCMAKE_CXX_COMPILER:PATH=%{_libdir}/mpi/gcc/$mpi/bin/mpic++ \
|
|
-DCMAKE_CXX_FLAGS="${CXXFLAGS:-%optflags} -DNDEBUG" \
|
|
-DCMAKE_Fortran_FLAGS="${FFLAGS:-%optflags%{?_fmoddir: -I%_fmoddir}} -DNDEBUG" \
|
|
-DCMAKE_EXE_LINKER_FLAGS="-Wl,--as-needed -Wl,--no-undefined -Wl,-z,now -ltirpc" \
|
|
-DCMAKE_MODULE_LINKER_FLAGS="-Wl,--as-needed -Wl,--no-undefined -Wl,-z,now -ltirpc" \
|
|
-DCMAKE_SHARED_LINKER_FLAGS="-Wl,--as-needed -Wl,--no-undefined -Wl,-z,now -ltirpc" \
|
|
-DCMAKE_SKIP_RPATH:BOOL=ON \
|
|
-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \
|
|
-DBUILD_SHARED_LIBS:BOOL=ON \
|
|
-DBUILD_STATIC_LIBS:BOOL=OFF \
|
|
-DCMAKE_COLOR_MAKEFILE:BOOL=OFF \
|
|
-DCMAKE_INSTALL_DO_STRIP:BOOL=OFF \
|
|
-DCMAKE_BUILD_TYPE:STRING=Release \
|
|
-DHDF4_BUILD_TOOLS:BOOL=ON \
|
|
-DHDF4_BUILD_UTILS:BOOL=ON \
|
|
-DHDF4_BUILD_JAVA:BOOL=ON \
|
|
-DHDF4_ENABLE_NETCDF:BOOL=OFF \
|
|
-DBUILD_TESTING:BOOL=ON \
|
|
-DHDF4_ENABLE_PARALLEL:BOOL=ON \
|
|
%if "%{?_lib}" == "lib64"
|
|
-DLIB_SUFFIX=64
|
|
%endif
|
|
|
|
make %{?_smp_mflags}
|
|
popd
|
|
done
|
|
|
|
# non-parallel static library
|
|
pushd build_static
|
|
cmake .. \
|
|
-DCMAKE_INSTALL_PREFIX:PATH=%{_prefix} \
|
|
-DHDF4_INSTALL_LIB_DIR:PATH=%{_libdir} \
|
|
-DHDF4_INSTALL_BIN_DIR:PATH=%{_bindir} \
|
|
-DHDF4_INSTALL_TOOLS_BIN_DIR:PATH=%{_bindir} \
|
|
-DHDF4_INSTALL_UTILS_BIN_DIR:PATH=%{_bindir} \
|
|
-DHDF4_INSTALL_INCLUDE_DIR:PATH=%{_includedir} \
|
|
-DHDF4_INSTALL_DATA_DIR:PATH=%{_datadir} \
|
|
-DHDF4_INSTALL_CMAKE_DIR:PATH=%{_datadir}/cmake/Modules/ \
|
|
-DCMAKE_BUILD_TYPE=Release \
|
|
-DCMAKE_C_FLAGS="${CFLAGS:-%optflags} -DNDEBUG" \
|
|
-DCMAKE_CXX_FLAGS="${CXXFLAGS:-%optflags} -DNDEBUG" \
|
|
-DCMAKE_Fortran_FLAGS="${FFLAGS:-%optflags%{?_fmoddir: -I%_fmoddir}} -DNDEBUG" \
|
|
-DCMAKE_EXE_LINKER_FLAGS="-Wl,--as-needed -Wl,--no-undefined -Wl,-z,now -ltirpc" \
|
|
-DCMAKE_MODULE_LINKER_FLAGS="-Wl,--as-needed -Wl,--no-undefined -Wl,-z,now -ltirpc" \
|
|
-DCMAKE_SHARED_LINKER_FLAGS="-Wl,--as-needed -Wl,--no-undefined -Wl,-z,now -ltirpc" \
|
|
-DCMAKE_SKIP_RPATH:BOOL=ON \
|
|
-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \
|
|
-DBUILD_SHARED_LIBS:BOOL=OFF \
|
|
-DBUILD_STATIC_LIBS:BOOL=ON \
|
|
-DCMAKE_COLOR_MAKEFILE:BOOL=OFF \
|
|
-DCMAKE_INSTALL_DO_STRIP:BOOL=OFF \
|
|
-DCMAKE_BUILD_TYPE:STRING=Release \
|
|
-DHDF4_BUILD_TOOLS:BOOL=OFF \
|
|
-DHDF4_BUILD_UTILS:BOOL=OFF \
|
|
-DHDF4_ENABLE_NETCDF:BOOL=OFF \
|
|
-DBUILD_TESTING:BOOL=ON \
|
|
-DHDF4_ENABLE_PARALLEL:BOOL=ON \
|
|
%if "%{?_lib}" == "lib64"
|
|
-DLIB_SUFFIX=64
|
|
%endif
|
|
|
|
make %{?_smp_mflags}
|
|
popd
|
|
# Non-parallel shared library
|
|
%cmake -DHDF4_INSTALL_LIB_DIR:PATH=%{_libdir} \
|
|
-DHDF4_INSTALL_DATA_DIR:PATH=%{_datadir} \
|
|
-DHDF4_INSTALL_CMAKE_DIR:PATH=%{_datadir}/cmake/Modules/ \
|
|
-DHDF4_INSTALL_BIN_DIR:PATH=%{_bindir} \
|
|
-DHDF4_INSTALL_TOOLS_BIN_DIR:PATH=%{_bindir} \
|
|
-DHDF4_INSTALL_UTILS_BIN_DIR:PATH=%{_bindir} \
|
|
-DHDF4_INSTALL_INCLUDE_DIR:PATH=%{_includedir} \
|
|
-DHDF4_INSTALL_JAR_DIR:PATH=%{_jnidir} \
|
|
-DCMAKE_BUILD_TYPE:STRING=Release \
|
|
-DCMAKE_C_FLAGS="${CFLAGS:-%optflags} -DNDEBUG" \
|
|
-DCMAKE_CXX_FLAGS="${CXXFLAGS:-%optflags} -DNDEBUG" \
|
|
-DBUILD_SHARED_LIBS:BOOL=ON \
|
|
-DBUILD_STATIC_LIBS:BOOL=OFF \
|
|
-DHDF4_BUILD_TOOLS:BOOL=ON \
|
|
-DHDF4_BUILD_UTILS:BOOL=ON \
|
|
-DHDF4_BUILD_JAVA=ON \
|
|
-DHDF4_ENABLE_NETCDF:BOOL=OFF \
|
|
-DBUILD_TESTING:BOOL=ON \
|
|
-DHDF4_ENABLE_PARALLEL:BOOL=OFF
|
|
make %{?_smp_mflags}
|
|
cd ..
|
|
|
|
%install
|
|
for mpi in %_mpi;
|
|
do
|
|
make VERBOSE=1 DESTDIR=%{buildroot} install/fast -C build_static_$mpi
|
|
make VERBOSE=1 DESTDIR=%{buildroot} install/fast -C build_$mpi
|
|
done
|
|
make VERBOSE=1 DESTDIR=%{buildroot} install/fast -C build_static
|
|
%cmake_install
|
|
|
|
rm %{buildroot}%{_jnidir}/slf4j*.jar
|
|
|
|
# Remove duplicate documentation
|
|
for file in COPYING RELEASE.txt USING_HDF4_CMake.txt hdf4_java_doc; do
|
|
rm -rf %{buildroot}%{_datadir}/$file
|
|
for mpi in %_mpi; do
|
|
rm -rf %{buildroot}%{_libdir}/mpi/gcc/$mpi/share/$file
|
|
done
|
|
done
|
|
|
|
# remove unneeded headers
|
|
for hname in alloc.h error.h glist.h hqueue.h mcache.h netcdf.inc vgint.h; do
|
|
rm %{buildroot}%{_includedir}/$hname
|
|
for mpi in %_mpi; do
|
|
rm %{buildroot}%{_libdir}/mpi/gcc/$mpi/include/$hname
|
|
done
|
|
done
|
|
|
|
# rpm macro for version checking
|
|
mkdir -p %{buildroot}%{_sysconfdir}/rpm
|
|
cat > %{buildroot}%{_sysconfdir}/rpm/macros.hdf <<EOF
|
|
#
|
|
# RPM macros for hdf5 packaging
|
|
#
|
|
%_hdf_sonum %{sonum}
|
|
%_hdf_version %{version}
|
|
EOF
|
|
|
|
# One fortran test fails under ppc64, s390 and aarch64
|
|
%check
|
|
for mpi in %_mpi; do
|
|
pushd build_static_$mpi
|
|
LD_LIBRARY_PATH=%{_libdir}/mpi/gcc/$mpi/%{_lib}:%{_builddir}/%{name}-%{version}/build_$mpi/bin:$LD_LIBRARY_PATH ctest --output-on-failure --force-new-ctest-process %{?_smp_mflags}
|
|
popd
|
|
pushd build_$mpi
|
|
LD_LIBRARY_PATH=%{_libdir}/mpi/gcc/$mpi/%{_lib}:%{_builddir}/%{name}-%{version}/build_$mpi/bin:$LD_LIBRARY_PATH ctest --output-on-failure --force-new-ctest-process %{?_smp_mflags}
|
|
popd
|
|
done
|
|
pushd build_static
|
|
LD_LIBRARY_PATH=%{buildroot}%{_libdir}:%{_builddir}/%{name}-%{version}/build/bin:$LD_LIBRARY_PATH ctest --output-on-failure --force-new-ctest-process %{?_smp_mflags}
|
|
popd
|
|
pushd build
|
|
LD_LIBRARY_PATH=%{buildroot}%{_libdir}:%{_builddir}/%{name}-%{version}/build/bin:$LD_LIBRARY_PATH ctest --output-on-failure --force-new-ctest-process %{?_smp_mflags}
|
|
popd
|
|
|
|
%post -n %{libname}%{sonum} -p /sbin/ldconfig
|
|
%postun -n %{libname}%{sonum} -p /sbin/ldconfig
|
|
|
|
%if 0%{?_openmpi}
|
|
%post -n %{libname}%{sonum}-openmpi -p /sbin/ldconfig
|
|
%postun -n %{libname}%{sonum}-openmpi -p /sbin/ldconfig
|
|
%endif
|
|
|
|
%if 0%{?_mvapich2}
|
|
%post -n %{libname}%{sonum}-mvapich2 -p /sbin/ldconfig
|
|
%postun -n %{libname}%{sonum}-mvapich2 -p /sbin/ldconfig
|
|
%endif
|
|
|
|
%files
|
|
%{_bindir}/*
|
|
|
|
%files -n %{libname}%{sonum}
|
|
%license COPYING
|
|
%doc MANIFEST README.txt release_notes/bugs_fixed.txt release_notes/HISTORY.txt release_notes/misc_docs.txt release_notes/RELEASE.txt
|
|
%{_libdir}/*.so.*
|
|
|
|
%files devel-data
|
|
%config(noreplace) %{_sysconfdir}/rpm/macros.hdf
|
|
|
|
%files devel
|
|
%{_includedir}/*
|
|
%{_libdir}/*.so
|
|
%{_datadir}/cmake/Modules/hdf4/
|
|
%{_libdir}/libhdf4.settings
|
|
%{_libdir}/pkgconfig/hdf-%{version}.pc
|
|
|
|
%files devel-static
|
|
%{_libdir}/*.a
|
|
|
|
%if 0%{?_openmpi}
|
|
%files openmpi
|
|
%{openmpi_prefix}/bin/*
|
|
|
|
%files -n %{libname}%{sonum}-openmpi
|
|
%license COPYING
|
|
%doc MANIFEST README.txt release_notes/bugs_fixed.txt release_notes/HISTORY.txt release_notes/misc_docs.txt release_notes/RELEASE.txt
|
|
%{openmpi_prefix}/%{_lib}/*.so.*
|
|
|
|
%files openmpi-devel
|
|
%{openmpi_prefix}/include/*
|
|
%{openmpi_prefix}/%{_lib}/*.so
|
|
%dir %{openmpi_prefix}/share/cmake/
|
|
%dir %{openmpi_prefix}/share/cmake/Modules/
|
|
%{openmpi_prefix}/share/cmake/Modules/hdf4/
|
|
%{openmpi_prefix}/%{_lib}/libhdf4.settings
|
|
%{openmpi_prefix}/%{_lib}/pkgconfig/hdf-%{version}.pc
|
|
|
|
%files openmpi-devel-static
|
|
%{openmpi_prefix}/%{_lib}/*.a
|
|
%endif
|
|
|
|
%if 0%{?_mvapich2}
|
|
%files mvapich2
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/*
|
|
|
|
%files -n %{libname}%{sonum}-mvapich2
|
|
%license COPYING
|
|
%doc MANIFEST README.txt release_notes/bugs_fixed.txt release_notes/HISTORY.txt release_notes/misc_docs.txt release_notes/RELEASE.txt
|
|
%{_libdir}/mpi/gcc/mvapich2/%{_lib}/*.so.*
|
|
|
|
%files mvapich2-devel
|
|
%{_libdir}/mpi/gcc/mvapich2/include/*
|
|
%{_libdir}/mpi/gcc/mvapich2/%{_lib}/*.so
|
|
%dir %{_libdir}/mpi/gcc/mvapich2/share/cmake/
|
|
%dir %{_libdir}/mpi/gcc/mvapich2/share/cmake/Modules/
|
|
%{_libdir}/mpi/gcc/mvapich2/share/cmake/Modules/hdf4/
|
|
|
|
%files mvapich2-devel-static
|
|
%{_libdir}/mpi/gcc/mvapich2/%{_lib}/*.a
|
|
%endif
|
|
|
|
%files -n java-hdf
|
|
%{_jnidir}/jarhdf-%{version}.jar
|
|
|
|
%changelog
|