70 lines
2.1 KiB
RPMSpec
70 lines
2.1 KiB
RPMSpec
#
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# spec file for package probcons
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#
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# Copyright (c) 2010 SUSE LINUX Products GmbH, Nuernberg, Germany.
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via http://bugs.opensuse.org/
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#
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# norootforbuild
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Name: probcons
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Summary: Multiple Alignments of Protein Sequences
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Version: 1.12
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Release: 2
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License: Public Domain
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Group: Productivity/Scientific/Other
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BuildRequires: gcc-c++ make
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Source: %{name}_v1_12.tar.gz
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Patch0: probcons-cstring.patch
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Patch1: probcons-1.12-fix-gcc-4.6.patch
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BuildRoot: %{_tmppath}/%{name}-%{version}-build
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URL: http://probcons.stanford.edu
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%description
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PROBCONS is a novel tool for generating multiple alignments of protein
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sequences. Using a combination of probabilistic modeling and consistency-based
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alignment techniques, PROBCONS has achieved the highest accuracies of all
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alignment methods to date.
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Citation:
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Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005.
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PROBCONS: Probabilistic Consistency-based Multiple Sequence Alignment.
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Genome Research 15: 330-340.
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%prep
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%setup -n %{name}
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#missing cstring in includes
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%patch0 -p1
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%patch1 -p1
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%build
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make
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%install
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rm -rf %{buildroot}
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mkdir -p %{buildroot}/%{_bindir}
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#compare clashes with program the same name from ImageMagick
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install -m 755 compare %{buildroot}/%{_bindir}/compare-probcons
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install -m 755 probcons %{buildroot}/%{_bindir}/probcons
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install -m 755 makegnuplot %{buildroot}/%{_bindir}/makegnuplot
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install -m 755 project %{buildroot}/%{_bindir}/project
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%clean
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rm -rf %{buildroot}
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%files
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%defattr(-,root,root)
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%{_bindir}/*
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%doc README
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%changelog
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