forked from pool/python-PyCBC
Accepting request 986387 from home:bnavigator:branches:science
- Update to version 2.0.4
* Add Multisignal models and fix issue where loading MKLblibs
before FFTW can in some cases cause a segfault.
- Release 2.0.3
* Adds support for hierarchical inference models and astropy 5.1
release.
- Update requirements
- Test in multibuild flavor in order to verify requirements.
OBS-URL: https://build.opensuse.org/request/show/986387
OBS-URL: https://build.opensuse.org/package/show/science/python-PyCBC?expand=0&rev=27
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@@ -1,5 +1,5 @@
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#
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# spec file for package python-PyCBC
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# spec file
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#
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# Copyright (c) 2022 SUSE LLC
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#
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@@ -16,68 +16,66 @@
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#
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%bcond_without tests
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%global flavor @BUILD_FLAVOR@%{nil}
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%if "%{flavor}" == "test"
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%define psuffix -test
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%bcond_without test
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%else
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%define psuffix %{nil}
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%bcond_with test
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%endif
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# Python2 no longer supported by PyCBC
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%define skip_python2 1
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%define modname PyCBC
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Name: python-PyCBC
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Version: 2.0.2
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Name: python-PyCBC%{psuffix}
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Version: 2.0.4
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Release: 0
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Summary: Core library to analyze gravitational-wave data
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License: GPL-3.0-or-later
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URL: http://www.pycbc.org/
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Source0: https://github.com/gwastro/pycbc/archive/v%{version}.tar.gz#/%{modname}-%{version}.tar.gz
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BuildRequires: %{python_module Cython}
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BuildRequires: %{python_module Cython >= 0.29}
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BuildRequires: %{python_module devel >= 3.7}
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BuildRequires: %{python_module numpy-devel}
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BuildRequires: %{python_module numpy}
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BuildRequires: %{python_module numpy-devel >= 1.16.0}
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BuildRequires: %{python_module setuptools}
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BuildRequires: fdupes
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BuildRequires: gcc-c++
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BuildRequires: python-rpm-macros
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Requires: python-astropy
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Requires: python-beautifulsoup4
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Requires: python-decorator
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Requires: python-h5py
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# Note: The definitive specification is setup.py, not requirements.txt!
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Requires: python-Cython >= 0.29
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Requires: python-Jinja2
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Requires: python-Mako >= 1.0.1
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Requires: python-Pillow
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Requires: python-astropy >= 2.0.3
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Requires: python-beautifulsoup4 >= 4.6.0
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Requires: python-gwdatafind
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Requires: python-h5py >= 3.0
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# SECTION lalsuite, see below
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Requires: python-lal
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Requires: python-lalframe
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Requires: python-lalpulsar
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Requires: python-lalsimulation
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Requires: python-ligo-lw
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# /SECTION
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Requires: python-ligo-lw >= 1.7.0
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Requires: python-ligo-segments
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Requires: python-lscsoft-glue
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Requires: python-numpy
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Requires: python-requests
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Requires: python-scipy
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Requires: python-matplotlib >= 1.5.1
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Requires: python-mpld3 >= 0.3
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Requires: python-numpy >= 1.16.0
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Requires: python-pegasus-wms.api >= 5.0.1
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Requires: python-scipy >= 0.16
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Requires: python-tqdm
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Recommends: python-gwdatafind
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Recommends: python-ligo-segments
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Conflicts: python-astropy = 4.0.5
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Conflicts: python-astropy = 4.2.1
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Conflicts: python-lal = 7.2
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Conflicts: python-numpy = 1.19.0
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ExclusiveArch: x86_64
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%if %{with tests}
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# SECTION Test Requirements
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BuildRequires: %{python_module Mako}
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BuildRequires: %{python_module astropy}
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BuildRequires: %{python_module beautifulsoup4}
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BuildRequires: %{python_module decorator}
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BuildRequires: %{python_module gwdatafind}
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BuildRequires: %{python_module h5py}
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BuildRequires: %{python_module lalframe}
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BuildRequires: %{python_module lalpulsar}
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BuildRequires: %{python_module lalsimulation}
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BuildRequires: %{python_module lal}
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BuildRequires: %{python_module ligo-lw}
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BuildRequires: %{python_module ligo-segments}
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BuildRequires: %{python_module lscsoft-glue}
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BuildRequires: %{python_module matplotlib}
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BuildRequires: %{python_module mpld3}
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%if %{with test}
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BuildRequires: %{python_module PyCBC = %{version}}
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BuildRequires: %{python_module pyFFTW}
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BuildRequires: %{python_module pytest}
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BuildRequires: %{python_module requests}
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BuildRequires: %{python_module testsuite}
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BuildRequires: %{python_module tqdm}
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# /SECTION
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%endif
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%python_subpackages
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@@ -92,6 +90,7 @@ of detected sources.
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Summary: PyCBC utilities to analyze gravitational-wave data
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Requires: python3-PyCBC = %{version}
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Obsoletes: python3-%{modname} <= 1.18.0
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BuildArch: noarch
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%description -n %{modname}-utils
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PyCBC is a software package used to explore astrophysical sources of
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@@ -105,10 +104,10 @@ the default python3 flavour.
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%prep
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%autosetup -p1 -n pycbc-%{version}
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sed -i "/emcee==/d" setup.py
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sed -i "s/,<1.19//" setup.py
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# there is no python metadata in the distribution to provide "lalsuite"
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sed -i '/lalsuite/d' setup.py
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# FOR REAL BINARIES SET HASHBANG TO PYTHON3 DIRECTLY
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# FOR REAL EXECUTABLES SET HASHBANG TO PYTHON3 DIRECTLY
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sed -E -i "1{s|^#\!\s*/usr/bin/env python|#\!%{_bindir}/python3|}" \
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bin/pycbc_* \
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bin/*/pycbc_*
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@@ -121,43 +120,47 @@ sed -E -i "1{/^#\!\s*\/usr\/bin/d}" \
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pycbc/results/*.py
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%build
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%if !%{with test}
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%python_build
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%endif
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%install
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%if !%{with test}
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%python_install
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sed -E -i "1 s|^#\!\s*/usr/bin/env\s*bash|#\!/bin/bash|" %{buildroot}%{_bindir}/run_pycbc_inference
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%python_expand chmod -x %{buildroot}%{$python_sitearch}/pycbc/results/static/js/fancybox/2.1.5/jquery.fancybox*.js
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%python_expand %fdupes %{buildroot}%{$python_sitearch}
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%if %{with tests}
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%check
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# Tests that either require network or don't work due to unpackaged modules
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rm -fr \
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examples/workflow/data_checker/daily_test.py \
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test/test_calibration.py \
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test/test_chisq.py \
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test/test_distributions.py \
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test/test_dq.py \
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test/test_fft*.py \
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test/test_frame.py \
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test/test_frequencyseries.py \
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test/test_infmodel.py
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%{python_expand pushd test # for tests
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export PYTHONPATH=%{buildroot}%{$python_sitearch}
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export PYTHONDONTWRITEBYTECODE=1
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pytest-%{$python_version}
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popd
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}
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%endif
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%if %{with test}
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%check
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# Tests that either require network or don't work due to unpackaged modules
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# can't use pytest --ignore because of a special arg parser in test/utils.py
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rm -r \
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test/test_infmodel.py \
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test/test_fft_mkl_threaded.py \
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test/test_fftw_openmp.py \
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test/test_dq.py \
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test/test_chisq.py
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pushd test
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%{python_expand # can't use the macro because of a special arg parser in test/utils.py
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export PYTHONDONTWRITEBYTECODE=1
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pytest-%{$python_bin_suffix}
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}
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popd
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%endif
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%if !%{with test}
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%files -n %{modname}-utils
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%{_bindir}/*
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%{_bindir}/pycbc_*
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%{_bindir}/run_pycbc_inference
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%files %{python_files}
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%{python_sitearch}/pycbc/
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%{python_sitearch}/%{modname}-%{version}-py%{python_version}.egg-info/
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%{python_sitearch}/pycbc
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%{python_sitearch}/%{modname}-%{version}*-info
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%endif
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%changelog
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