Index: configure
===================================================================
--- configure.orig
+++ configure
@@ -89,7 +89,7 @@ fi
 # 13. CHECK TO SEE WHETHER THIS SYSTEM HAS CFITSIO HEADERS
 
 echo $ECHO_N "Checking for libcfitsio-dev    ............. $ECHO_C"
-if printf '#include <fitsio.h>\nint main() { return 0; }\n' | gcc -x c - -o conf.out > conf.stdout 2> conf.stderr
+if printf '#include <fitsio.h>\nint main() { return 0; }\n' | gcc $(pkg-config --cflags cfitsio) -x c - -o conf.out > conf.stdout 2> conf.stderr
 then
  rm -f conf.*
  echo "YES"
Index: Makefile.skel
===================================================================
--- Makefile.skel.orig
+++ Makefile.skel
@@ -41,8 +41,8 @@ VERSION_MIN = 9
 VERSION_REV = 2
 DATE    = 19/09/2012
 
-COMPILE = $(CC) -Wall -g `xml2-config --cflags` `gsl-config --cflags` -c -I $(CWD)/src
-LIBS    = $(LINK_FFTW) `xml2-config --libs` `gsl-config --libs` $(LINK_READLINE) -lz -lpng $(LINK_KPATHSEA) -lm
+COMPILE = $(CC) -Wall -g `xml2-config --cflags` `gsl-config --cflags` `pkg-config --cflags cfitsio` -c -I $(CWD)/src
+LIBS    = $(LINK_FFTW) `xml2-config --libs` `gsl-config --libs` `pkg-config --libs cfitsio` $(LINK_READLINE) -lz -lpng $(LINK_KPATHSEA) -lm
 LINK    = $(CC) -Wall -g
 
 OPTIMISATION = -O2