forked from pool/samtools
Atri Bhattacharya
ceb137f722
Too many changes to list, for details see included NEWS.md or https://github.com/samtools/samtools/releases/tag/1.21 - Update to version 1.20 Too many changes to list, for details see included NEWS.md or https://github.com/samtools/samtools/releases/tag/1.20 OBS-URL: https://build.opensuse.org/package/show/science/samtools?expand=0&rev=19
66 lines
2.0 KiB
RPMSpec
66 lines
2.0 KiB
RPMSpec
#
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# spec file for package samtools
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#
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# Copyright (c) 2024 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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%define htsminversion 1.21
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Name: samtools
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Version: 1.21
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Release: 0
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Summary: Tools for manipulating next-generation sequencing data
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License: MIT
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Group: Productivity/Scientific/Other
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URL: https://github.com/samtools/samtools
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Source: https://github.com/samtools/samtools/releases/download/%{version}/samtools-%{version}.tar.bz2
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BuildRequires: ncurses-utils
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BuildRequires: perl-base
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BuildRequires: pkgconfig(htslib) >= %{htsminversion}
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BuildRequires: pkgconfig(ncurses)
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BuildRequires: pkgconfig(zlib)
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Requires: bgzip
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Requires: perl-base
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Requires: tabix
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%description
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Samtools implements various utilities for post-processing alignments in the
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SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction
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with bcftools), and a simple alignment viewer.
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%prep
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%setup -q
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%build
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%configure --with-htslib=system
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%make_build
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%install
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%make_install
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# CONVERT env HASHBANGS TO USE DIRECT EXECUTABLE
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perlbin=`which perl`
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sed -i "s:/usr/bin/env perl:${perlbin}:" %{buildroot}/%{_bindir}/*.pl
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sed -i "s:/usr/bin/env perl:${perlbin}:" %{buildroot}/%{_bindir}/plot-bamstats
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sed -i "s:/usr/bin/env perl:${perlbin}:" %{buildroot}/%{_bindir}/plot-ampliconstats
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%files
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%license LICENSE
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%doc NEWS.md README
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%{_bindir}/*
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%{_mandir}/man1/*
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%changelog
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