67 lines
2.0 KiB
RPMSpec
67 lines
2.0 KiB
RPMSpec
#
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# spec file for package stacks
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#
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# Copyright (c) 2018 SUSE LINUX GmbH, Nuernberg, Germany.
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via http://bugs.opensuse.org/
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#
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Name: stacks
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Version: 2.62
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Release: 0
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Summary: Pipeline to analyze restriction enzyme-based data
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License: GPL-3.0-only
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Group: Productivity/Scientific/Other
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URL: http://catchenlab.life.illinois.edu/stacks/
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Source: http://catchenlab.life.illinois.edu/stacks/source/stacks-%{version}.tar.gz
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BuildRequires: gcc-c++
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BuildRequires: perl-DBD-mysql
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BuildRequires: python
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BuildRequires: sparsehash-devel
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BuildRequires: zlib-devel
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Requires: perl
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Requires: python
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%description
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Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform.
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Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and
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conducting population genomics and phylogeography.
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%prep
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%setup -q
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%build
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%configure
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make %{?_smp_mflags}
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%install
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%make_install
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# CONVERT env HASHBANGS TO USE DIRECT EXECUTABLE
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perlbin=`which perl`
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sed -i "s:/usr/bin/env perl:${perlbin}:" %{buildroot}/%{_bindir}/*.pl
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pybin=`which python`
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sed -i "s:/usr/bin/env python:${pybin}:" %{buildroot}/%{_bindir}/*.py
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%files
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%license LICENSE
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%doc README ChangeLog
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%{_bindir}/*
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%{_datadir}/stacks/
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%{_datadir}/stacks/php/
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%{_datadir}/stacks/php/*
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%{_datadir}/stacks/sql/
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%{_datadir}/stacks/sql/*
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%changelog
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