600d356036
- Update to 0.1.16: * Minor release to address security vulnerabilities. OBS-URL: https://build.opensuse.org/request/show/1063022 OBS-URL: https://build.opensuse.org/package/show/science/vcftools?expand=0&rev=5
66 lines
1.9 KiB
RPMSpec
66 lines
1.9 KiB
RPMSpec
#
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# spec file for package vcftools
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#
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# Copyright (c) 2023 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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Name: vcftools
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Version: 0.1.16
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Release: 0
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Summary: Tools for manipulating VCF files (Variant Call Format)
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License: GPL-3.0-only
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Group: Productivity/Scientific/Other
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URL: https://vcftools.github.io/
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Source: https://github.com/%{name}/%{name}/releases/download/v%{version}/%{name}-%{version}.tar.gz
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BuildRequires: gcc-c++
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BuildRequires: perl
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BuildRequires: pkgconfig
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BuildRequires: zlib-devel
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%description
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VCFtools is a set of tools written in Perl and C++ for working with VCF files
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(Variant Call Format), such as those generated by the 1000 Genomes Project.
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%prep
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%setup -q
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chmod -x LICENSE
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chmod -x README.md
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%build
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# Remove prefix from perl_vendorarch to set up the pmdir
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perl_vendorarch_short=`echo "%{perl_vendorarch}" | sed 's:%{_prefix}/:/:'`
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%configure --with-pmdir=${perl_vendorarch_short}
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%make_build
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%install
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%make_install
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# CONVERT env HASHBANGS TO USE DIRECT EXECUTABLE
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perlbin=`which perl`
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sed -i "1 {s:/usr/bin/env perl:${perlbin}:}" \
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%{buildroot}/%{_bindir}/fill-* \
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%{buildroot}/%{_bindir}/vcf-*
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%files
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%license LICENSE
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%doc README.md
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%{_bindir}/*
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%{_mandir}/man1/vcftools.1%{?ext_man}
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%{perl_vendorarch}/FaSlice.pm
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%{perl_vendorarch}/Vcf.pm
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%{perl_vendorarch}/VcfStats.pm
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%changelog
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