Archie Cobbs
78440636ab
- Install database files from tarball plus human, mouse, and rat - Add missing newline to error message OBS-URL: https://build.opensuse.org/package/show/science/xtandem?expand=0&rev=3
41 lines
1.0 KiB
Groff
41 lines
1.0 KiB
Groff
.\" -*- nroff -*-
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.\"
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.Dd February 5, 2013
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.Dt XTANDEM 1
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.Os
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.Sh NAME
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.Nm xtandem
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.Nd X! Tandem Spectrum Modeler
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.Sh SYNOPSIS
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.Nm xtandem
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.Bk -words
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.Ar input.xml
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.Ek
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.Sh DESCRIPTION
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X! Tandem open source is software that can match tandem mass spectra
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with peptide sequences, in a process that has come to be known as protein
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identification.
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.Pp
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This software has a very simple, sophisticated application programming
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interface (API): it simply takes an XML file of instructions on its
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command line, and outputs the results into an XML file, which has been
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specified in the input XML file.
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.Sh FILES
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.Bl -tag -compact -width Ds
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.It Pa /usr/share/xtandem
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Directory containing sample input and configuration files
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.It Pa /usr/share/xtandem/fasta
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Directory containing database files
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.It Pa /usr/share/xtandem/xsl
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HTML stylesheets for viewing input and output files
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.El
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.Sh SEE ALSO
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.Rs
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.%T "X! Tandem Spectrum Modeler"
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.%O http://www.thegpm.org/TANDEM/instructions.html
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.Re
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.Rs
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.%T "X! Tandem Database Files"
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.%O ftp://ftp.thegpm.org/fasta/
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.Re
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