Sync from SUSE:SLFO:Main gsl revision 615882f8f9aecce5f8c9ff300efbd09c
This commit is contained in:
commit
d37d610431
23
.gitattributes
vendored
Normal file
23
.gitattributes
vendored
Normal file
|
|
@ -0,0 +1,23 @@
|
|||
## Default LFS
|
||||
*.7z filter=lfs diff=lfs merge=lfs -text
|
||||
*.bsp filter=lfs diff=lfs merge=lfs -text
|
||||
*.bz2 filter=lfs diff=lfs merge=lfs -text
|
||||
*.gem filter=lfs diff=lfs merge=lfs -text
|
||||
*.gz filter=lfs diff=lfs merge=lfs -text
|
||||
*.jar filter=lfs diff=lfs merge=lfs -text
|
||||
*.lz filter=lfs diff=lfs merge=lfs -text
|
||||
*.lzma filter=lfs diff=lfs merge=lfs -text
|
||||
*.obscpio filter=lfs diff=lfs merge=lfs -text
|
||||
*.oxt filter=lfs diff=lfs merge=lfs -text
|
||||
*.pdf filter=lfs diff=lfs merge=lfs -text
|
||||
*.png filter=lfs diff=lfs merge=lfs -text
|
||||
*.rpm filter=lfs diff=lfs merge=lfs -text
|
||||
*.tbz filter=lfs diff=lfs merge=lfs -text
|
||||
*.tbz2 filter=lfs diff=lfs merge=lfs -text
|
||||
*.tgz filter=lfs diff=lfs merge=lfs -text
|
||||
*.ttf filter=lfs diff=lfs merge=lfs -text
|
||||
*.txz filter=lfs diff=lfs merge=lfs -text
|
||||
*.whl filter=lfs diff=lfs merge=lfs -text
|
||||
*.xz filter=lfs diff=lfs merge=lfs -text
|
||||
*.zip filter=lfs diff=lfs merge=lfs -text
|
||||
*.zst filter=lfs diff=lfs merge=lfs -text
|
||||
73
989a193268b963aa1047814f7f1402084fb7d859.patch
Normal file
73
989a193268b963aa1047814f7f1402084fb7d859.patch
Normal file
|
|
@ -0,0 +1,73 @@
|
|||
From 989a193268b963aa1047814f7f1402084fb7d859 Mon Sep 17 00:00:00 2001
|
||||
From: Patrick Alken <alken@colorado.edu>
|
||||
Date: Sat, 16 Apr 2022 11:56:10 -0600
|
||||
Subject: fix for bug #59624
|
||||
|
||||
---
|
||||
NEWS | 2 ++
|
||||
statistics/quantiles.c | 1 +
|
||||
statistics/quantiles_source.c | 35 +++++++++++++++++++++--------------
|
||||
3 files changed, 24 insertions(+), 14 deletions(-)
|
||||
|
||||
diff --git a/statistics/quantiles.c b/statistics/quantiles.c
|
||||
index 96a3a25..50898d9 100644
|
||||
--- a/statistics/quantiles.c
|
||||
+++ b/statistics/quantiles.c
|
||||
@@ -1,5 +1,6 @@
|
||||
#include <config.h>
|
||||
#include <gsl/gsl_statistics.h>
|
||||
+#include <gsl/gsl_errno.h>
|
||||
|
||||
#define BASE_LONG_DOUBLE
|
||||
#include "templates_on.h"
|
||||
diff --git a/statistics/quantiles_source.c b/statistics/quantiles_source.c
|
||||
index e2956d9..b2feba4 100644
|
||||
--- a/statistics/quantiles_source.c
|
||||
+++ b/statistics/quantiles_source.c
|
||||
@@ -24,22 +24,29 @@ FUNCTION(gsl_stats,quantile_from_sorted_data) (const BASE sorted_data[],
|
||||
const size_t n,
|
||||
const double f)
|
||||
{
|
||||
- const double index = f * (n - 1) ;
|
||||
- const size_t lhs = (int)index ;
|
||||
- const double delta = index - lhs ;
|
||||
- double result;
|
||||
-
|
||||
- if (n == 0)
|
||||
- return 0.0 ;
|
||||
-
|
||||
- if (lhs == n - 1)
|
||||
+ if ((f < 0.0) || (f > 1.0))
|
||||
{
|
||||
- result = sorted_data[lhs * stride] ;
|
||||
+ GSL_ERROR_VAL ("invalid quantile fraction", GSL_EDOM, 0.0);
|
||||
}
|
||||
- else
|
||||
+ else
|
||||
{
|
||||
- result = (1 - delta) * sorted_data[lhs * stride] + delta * sorted_data[(lhs + 1) * stride] ;
|
||||
- }
|
||||
+ const double index = f * (n - 1) ;
|
||||
+ const size_t lhs = (int)index ;
|
||||
+ const double delta = index - lhs ;
|
||||
+ double result;
|
||||
|
||||
- return result ;
|
||||
+ if (n == 0)
|
||||
+ return 0.0 ;
|
||||
+
|
||||
+ if (lhs == n - 1)
|
||||
+ {
|
||||
+ result = sorted_data[lhs * stride] ;
|
||||
+ }
|
||||
+ else
|
||||
+ {
|
||||
+ result = (1 - delta) * sorted_data[lhs * stride] + delta * sorted_data[(lhs + 1) * stride] ;
|
||||
+ }
|
||||
+
|
||||
+ return result ;
|
||||
+ }
|
||||
}
|
||||
--
|
||||
cgit v1.1
|
||||
|
||||
4
_multibuild
Normal file
4
_multibuild
Normal file
|
|
@ -0,0 +1,4 @@
|
|||
<multibuild>
|
||||
<package>serial</package>
|
||||
<package>gnu-hpc</package>
|
||||
</multibuild>
|
||||
BIN
gsl-2.7.1.tar.gz
(Stored with Git LFS)
Normal file
BIN
gsl-2.7.1.tar.gz
(Stored with Git LFS)
Normal file
Binary file not shown.
BIN
gsl-2.7.1.tar.gz.sig
Normal file
BIN
gsl-2.7.1.tar.gz.sig
Normal file
Binary file not shown.
35
gsl-disable-fma.patch
Normal file
35
gsl-disable-fma.patch
Normal file
|
|
@ -0,0 +1,35 @@
|
|||
Index: gsl-1.15/configure.ac
|
||||
===================================================================
|
||||
--- gsl-1.15.orig/configure.ac
|
||||
+++ gsl-1.15/configure.ac
|
||||
@@ -381,6 +381,30 @@ AC_SUBST(HAVE_OPENBSD_IEEE_INTERFACE)
|
||||
AC_SUBST(HAVE_DARWIN_IEEE_INTERFACE)
|
||||
AC_SUBST(HAVE_DARWIN86_IEEE_INTERFACE)
|
||||
|
||||
+dnl check for compiler flags to disable use of FMA
|
||||
+save_cflags="$CFLAGS"
|
||||
+AC_CACHE_CHECK([for compiler flags to disable use of FMA], ac_cv_c_fma_flags,
|
||||
+[
|
||||
+if test X"$GCC" = Xyes; then
|
||||
+ fma_flags='-ffp-contract=off'
|
||||
+else
|
||||
+ fma_flags=
|
||||
+fi
|
||||
+if test X"$fma_flags" != X; then
|
||||
+ CFLAGS="$fma_flags $CFLAGS"
|
||||
+ AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[]], [[int
|
||||
+foo;]])],[ac_cv_c_fma_flags="$fma_flags"],[ac_cv_c_fma_flags="none"])
|
||||
+else
|
||||
+ ac_cv_c_fma_flags="none"
|
||||
+fi])
|
||||
+
|
||||
+if test "$ac_cv_c_fma_flags" != "none" ; then
|
||||
+ CFLAGS="$ac_cv_c_fma_flags $save_cflags"
|
||||
+else
|
||||
+ CFLAGS="$save_cflags"
|
||||
+fi
|
||||
+
|
||||
+
|
||||
dnl Check for IEEE control flags
|
||||
|
||||
save_cflags="$CFLAGS"
|
||||
27
gsl-qawc-test-x86-precision.diff
Normal file
27
gsl-qawc-test-x86-precision.diff
Normal file
|
|
@ -0,0 +1,27 @@
|
|||
--- integration/test.c.orig
|
||||
+++ integration/test.c
|
||||
@@ -1754,7 +1754,11 @@ int main (void)
|
||||
gsl_test_rel(w->rlist[i],r[i],1e-14,"qawc(f459) rlist") ;
|
||||
|
||||
for (i = 0; i < 6 ; i++)
|
||||
+#ifdef __i386__ /* x86 extra FPU precision hurts us here */
|
||||
gsl_test_rel(w->elist[i],e[i],1e-4,"qawc(f459) elist") ;
|
||||
+#else
|
||||
+ gsl_test_rel(w->elist[i],e[i],1e-5,"qawc(f459) elist") ;
|
||||
+#endif
|
||||
|
||||
for (i = 0; i < 6 ; i++)
|
||||
gsl_test_int((int)w->order[i],order[i]-1,"qawc(f459) order");
|
||||
--- configure.ac.orig
|
||||
+++ configure.ac
|
||||
@@ -87,7 +87,9 @@ AC_CANONICAL_HOST
|
||||
|
||||
dnl Checks for programs.
|
||||
AC_LANG(C)
|
||||
-AC_PROG_CC
|
||||
+AC_PROG_CC_STDC
|
||||
+AC_USE_SYSTEM_EXTENSIONS
|
||||
+AC_SYS_LARGEFILE
|
||||
AC_PROG_CPP
|
||||
AC_PROG_INSTALL
|
||||
AC_PROG_LN_S
|
||||
727
gsl.changes
Normal file
727
gsl.changes
Normal file
|
|
@ -0,0 +1,727 @@
|
|||
-------------------------------------------------------------------
|
||||
Mon Aug 28 11:27:15 UTC 2023 - Adam Majer <adam.majer@suse.de>
|
||||
|
||||
- 989a193268b963aa1047814f7f1402084fb7d859.patch: fix
|
||||
stack out of bounds read in gsl_stats_quantile_from_sorted_data()
|
||||
(bsc#1214681, CVE-2020-353570)
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Feb 3 14:25:46 UTC 2023 - Stefan Brüns <stefan.bruens@rwth-aachen.de>
|
||||
|
||||
- update to gsl 2.7.1:
|
||||
* update libtool version numbers
|
||||
- update to gsl 2.7:
|
||||
* fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com)
|
||||
* fixed bug #60335 (spmatrix test failure, J. Lamb)
|
||||
* fixed bug #36577
|
||||
* clarified documentation on interpolation accelerators
|
||||
(V. Krishnan)
|
||||
* fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2,
|
||||
thanks to M. Sitte)
|
||||
* fixed doc bug #59758
|
||||
* fixed bug #58202 (rstat median for n=5)
|
||||
* added support for native C complex number types in gsl_complex
|
||||
when using a C11 compiler
|
||||
* upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6
|
||||
* updated exponential fitting example for nonlinear least squares
|
||||
* added banded LU decomposition and solver (gsl_linalg_LU_band)
|
||||
* New functions added to the library:
|
||||
- gsl_matrix_norm1
|
||||
- gsl_spmatrix_norm1
|
||||
- gsl_matrix_complex_conjtrans_memcpy
|
||||
- gsl_linalg_QL: decomp, unpack
|
||||
- gsl_linalg_complex_QR_* (thanks to Christian Krueger)
|
||||
- gsl_vector_sum
|
||||
- gsl_matrix_scale_rows
|
||||
- gsl_matrix_scale_columns
|
||||
- gsl_multilarge_linear_matrix_ptr
|
||||
- gsl_multilarge_linear_rhs_ptr
|
||||
- gsl_spmatrix_dense_add (renamed from
|
||||
gsl_spmatrix_add_to_dense)
|
||||
- gsl_spmatrix_dense_sub
|
||||
- gsl_linalg_cholesky_band: solvem, svxm, scale, scale_apply
|
||||
- gsl_linalg_QR_UD: decomp, lssolve
|
||||
- gsl_linalg_QR_UU: decomp, lssolve, QTvec
|
||||
- gsl_linalg_QR_UZ: decomp
|
||||
- gsl_multifit_linear_lcurvature
|
||||
- gsl_spline2d_eval_extrap
|
||||
* bug fix in checking vector lengths in gsl_vector_memcpy
|
||||
(dieggsy@pm.me)
|
||||
* made gsl_sf_legendre_array_index() inline and documented
|
||||
gsl_sf_legendre_nlm()
|
||||
- Drop no longer required gsl-rpmlintrc
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue May 24 20:48:30 UTC 2022 - Egbert Eich <eich@suse.com>
|
||||
|
||||
- Add gsl-rpmlintrc rule to ignore shlib name policy errors for HPC
|
||||
packages (see this file for explanation) (bsc#1191757).
|
||||
- Make doc package arch-independent.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri May 14 13:31:41 UTC 2021 - Dominique Leuenberger <dimstar@opensuse.org>
|
||||
|
||||
- Do not own standard filesystem dir /usr/lib64/pkgconfig.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sat Feb 6 08:08:30 UTC 2021 - Egbert Eich <eich@suse.com>
|
||||
|
||||
- Add support for gcc8 and gcc9 builds for HPC (jsc#SLE-7766,
|
||||
jsc#SLE-8604).
|
||||
- Add build support for gcc10 to HPC build (bsc#1174439).
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Nov 15 09:59:28 UTC 2019 - Christian Goll <cgoll@suse.com>
|
||||
|
||||
- module package must not be noarch, so that %{_lib} is expanded
|
||||
correctly
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Aug 21 18:55:31 UTC 2019 - Andreas Stieger <andreas.stieger@gmx.de>
|
||||
|
||||
- update to gsl 2.6: (jsc#SLE-8495)
|
||||
* add BLAS calls for multiple functions
|
||||
* Algorithm and implementation updates
|
||||
* deprecation of multiple functions
|
||||
* removal of multiple previously deprecated functions
|
||||
* add binary search tree module (gsl_bst); based on GNU libavl
|
||||
* remove -u flag to gsl-histogram
|
||||
* updated spmatrix module
|
||||
* add routines for banded Cholesky decomposition
|
||||
- drop upstreamed patches:
|
||||
* gsl-1.6-initvars.diff
|
||||
* gsl-wrap.diff
|
||||
* gsl-fsf_address.patch
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Feb 14 09:00:22 UTC 2019 - adam.majer@suse.de
|
||||
|
||||
- mark examples as a noarch package
|
||||
- install license for examples and remove unnecessary dependencies
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Feb 13 08:51:31 UTC 2019 - Antoine Ginies <aginies@suse.com>
|
||||
|
||||
- add an examples sub package to test in production env
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Feb 11 19:09:54 UTC 2019 - Egbert Eich <eich@suse.com>
|
||||
|
||||
- Simplify package naming for HPC.
|
||||
- Fix dependencies for HPC.
|
||||
- Library directory is always available when module file is
|
||||
installed, do not hide it.
|
||||
- Properly create and tear down default version links when the
|
||||
HPC master packages are installed/uninstalled.
|
||||
- Create pkgconfig file for gslcblas as well.
|
||||
- Add missing env variables to modules file: MANPATH, INFOPATH,
|
||||
PKG_CONFIG_PATH.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Oct 23 16:30:44 UTC 2018 - jjolly@suse.com
|
||||
|
||||
- Convert package to _multibuild
|
||||
- Add HPC build macros and evironment modules
|
||||
* (FATE#324138)
|
||||
- Add master packages for libraries and devel package
|
||||
- Remove BLAS build dependency
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sat Jul 28 13:49:30 UTC 2018 - jengelh@inai.de
|
||||
|
||||
- Remove useless --with-pic only useful for static libs.
|
||||
- Fix RPM groups, diversify summaries, trim long descriptions.
|
||||
- Trim bias from descriptions.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Jun 26 07:07:15 UTC 2018 - adam.majer@suse.de
|
||||
|
||||
- updated license tags in spec file
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Jun 15 07:58:16 UTC 2018 - astieger@suse.com
|
||||
|
||||
- gsl 2.5:
|
||||
* doc bug fix in binomial distribution figure
|
||||
* added Wishart distribution
|
||||
* added new module for digital filtering (gsl_filter); current
|
||||
filters include:
|
||||
Gaussian filter
|
||||
median filter
|
||||
recursive median filter
|
||||
impulse detection filter
|
||||
* added new module for moving window statistics (gsl_movstat)
|
||||
* added statistics functions:
|
||||
gsl_stats_median()
|
||||
gsl_stats_select()
|
||||
gsl_stats_mad()
|
||||
gsl_stats_mad0()
|
||||
gsl_stats_Sn_from_sorted_data()
|
||||
gsl_stats_Qn_from_sorted_data()
|
||||
gsl_stats_gastwirth_from_sorted_data()
|
||||
gsl_stats_trmean_from_sorted_data()
|
||||
* added Romberg integration (gsl_integration_romberg)
|
||||
* bug fix in deprecated functions gsl_multifit_wlinear_svd and
|
||||
gsl_multifit_wlinear_usvd (reported by Vlad Koli)
|
||||
* documention corrected to state that gsl_sf_legendre functions
|
||||
do not include Condon-Shortley phase by default
|
||||
* bug fix in exponential fitting example when using larger number
|
||||
of points
|
||||
* changed internal workspace inside gsl_spmatrix to a union to
|
||||
avoid casting
|
||||
* bug fixes in ode-initval2 for very rare solver crashing cases
|
||||
* add histogram2d figure to manual
|
||||
* bug fix in gsl_spmatrix_add for duplicate input arguments
|
||||
* add support for negative arguments nu in gsl_sf_bessel_Jnu and
|
||||
gsl_sf_bessel_Ynu (Konrad Griessinger)
|
||||
* better texinfo documentation for gsl_sf_hyperg functions
|
||||
* fix vector and matrix fread/fwrite testing on windows systems
|
||||
when tmpfile() fails
|
||||
- drop rstat_test.patch, is upstream
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon May 14 13:07:21 UTC 2018 - adam.majer@suse.de
|
||||
|
||||
- temporarily disable unit tests on i586 (boo#1092530)
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Jun 20 08:26:18 UTC 2017 - adam.majer@suse.de
|
||||
|
||||
- rstat_test.patch - Fix rstat test on PPC platform
|
||||
- re-enable multi-job support in unit tests (check make target)
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Jun 19 14:11:18 UTC 2017 - adam.majer@suse.de
|
||||
|
||||
- Update to new upstream version 2.4:
|
||||
* add const to declaration of appropriate gsl_rstat routines
|
||||
* added routines for Hermite polynomials, gsl_sf_hermite_*
|
||||
* added routines to compute integrals with fixed-point
|
||||
quadrature, based on IQPACK
|
||||
* added new nonlinear least squares example for fitting
|
||||
a Gaussian to data
|
||||
* deprecated routines:
|
||||
gsl_sf_coupling_6j_INCORRECT
|
||||
gsl_sf_coupling_6j_INCORRECT_e
|
||||
* deprecated routine 'gsl_linalg_hessenberg' (replaced
|
||||
by gsl_linalg_hessenberg_decomp)
|
||||
* removed routines which were deprecated in v2.1:
|
||||
gsl_bspline_deriv_alloc
|
||||
gsl_bspline_deriv_free
|
||||
* changed COD expression to Q R Z^T instead of Q R Z to
|
||||
be consistent with standard texts
|
||||
* added check for nz == 0 in gsl_spmatrix_get
|
||||
* permit zero-dimension blocks, vectors, matrics, subvectors,
|
||||
submatrices, and views of the above
|
||||
* added routine gsl_linalg_COD_lssolve2 for regularized
|
||||
least squares problems
|
||||
- obsoletes patches:
|
||||
* ppc_test_tolerence.patch
|
||||
* fix_legendre_test.patch
|
||||
- unit tests re-enabled
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Jun 14 11:54:35 UTC 2017 - adam.majer@suse.de
|
||||
|
||||
- Update to test version 2.3.90.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu May 18 08:57:35 UTC 2017 - adam.majer@suse.de
|
||||
|
||||
- Add unit test error logs to build logs when there is a failure
|
||||
- ppc_test_tolerence.patch: Fix unit tests on PPC64 and PPC64LE
|
||||
- fix_legendre_test.patch: Ignore part of failing unit test on i586
|
||||
(boo#1030250)
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Jan 6 09:31:46 UTC 2017 - mpluskal@suse.com
|
||||
|
||||
- Update to version 2.3:
|
||||
* bug fix in documentation for gsl_linalg_LU_refine
|
||||
* added gsl_multifit_linear_tsvd and gsl_multifit_wlinear_tsvd
|
||||
* improved rstat example program and added documentation for
|
||||
* added function gsl_multifit_linear_rank
|
||||
* bug fix in nonlinear least squares when using data weights with
|
||||
* add 2D subspace method for large systems (multilarge_nlinear)
|
||||
* bug fix in gsl_ran_beta for small parameters
|
||||
* bug fix in gsl_complex_tan for negative imaginary arguments
|
||||
* doc bug fix: value of golden ratio
|
||||
* fixed scaling issue in 2D subspace nonlinear least squares
|
||||
method
|
||||
* optimize dogleg methods to calculate Gauss-Newton point
|
||||
only when needed
|
||||
* reverted gsl_linalg_cholesky_decomp to its previous behavior
|
||||
so it is backward compatible; new cholesky routine is
|
||||
gsl_linalg_cholesky_decomp1
|
||||
* updated gsl_linalg_cholesky_invert to use Level-2 BLAS
|
||||
* added functions gsl_linalg_tri_*_invert for inverting
|
||||
* fix GSL_EIGEN_SORT_VAL_{ASC,DESC} for nonsymmetric
|
||||
* added complete orthogonal decomposition routines
|
||||
* and many more - see ChangeLog for full list
|
||||
- Drop upstreamed patches:
|
||||
* gsl-disable-multifit-test.patch
|
||||
* gsl-rstat-test-powerpc.patch
|
||||
- Packaging changes:
|
||||
* use https url's for download
|
||||
* fetch keyring from savannah
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Jul 29 11:08:14 UTC 2016 - adam.majer@suse.de
|
||||
|
||||
- Add missing Requires in -devel following package split
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Jul 29 07:48:04 UTC 2016 - dmitry_r@opensuse.org
|
||||
|
||||
- Move gslcblas library to separate package [boo#991155]
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sat Jun 18 20:39:30 UTC 2016 - dmitry_r@opensuse.org
|
||||
|
||||
- Update to version 2.1
|
||||
* added gsl_multifit_linear_rcond() to compute reciprocal
|
||||
condition number of least squares matrix
|
||||
* added gsl_multilarge module for large linear least squares
|
||||
systems
|
||||
New in version 2.0
|
||||
* added L-curve analysis routines for linear Tikhonov regression
|
||||
* add running statistics module
|
||||
* added bilinear and bicubic interpolation
|
||||
* added function gsl_multifit_robust_residuals to compute robust
|
||||
fit residuals
|
||||
* added Steffen monotonic interpolation method
|
||||
* added new nonlinear least squares solver 'lmniel' suitable for
|
||||
systems with large numbers of data
|
||||
* nonlinear least squares solver now tracks the number of function
|
||||
Jacobian evaluations, see example program for details
|
||||
* the 'fdf' field of gsl_multifit_function_fdf is now deprecated
|
||||
and does not need to be specified for nonlinear least squares
|
||||
problems
|
||||
* added extensive test suite to nonlinear least squares module,
|
||||
resulting in a few minor bug fixes; the routine
|
||||
gsl_multifit_fdfsolver_driver has been rewritten (with API change)
|
||||
to handle the various error codes of the lmsder iterate
|
||||
routine, resulting in a high level caller which is highly robust
|
||||
for a wide class of problems
|
||||
* added support for sparse matrices, including a GMRES
|
||||
iterative linear solver
|
||||
* added routines gsl_linalg_givens and gsl_linalg_givens_gv
|
||||
for Givens rotations
|
||||
* added Tikhonov (ridge) regularization to least squares module
|
||||
(linear and nonlinear)
|
||||
* Drop obsolete gsl-sorting-complex-numbers.patch
|
||||
- Disable multifit test for 32-bit systems
|
||||
* gsl-disable-multifit-test.patch
|
||||
- Fix build on PowerPC systems
|
||||
* gsl-rstat-test-powerpc.patch
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Jun 8 07:25:20 UTC 2015 - dimstar@opensuse.org
|
||||
|
||||
- Add gsl-sorting-complex-numbers.patch: fix in sorting of complex
|
||||
numbers (http://savannah.gnu.org/bugs/?39055).
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Feb 25 20:04:58 UTC 2015 - mpluskal@suse.com
|
||||
|
||||
- Cleanup spec file with spec-cleaner
|
||||
- Add gpg keys
|
||||
- Update dependencies
|
||||
- Split documentation to separate package
|
||||
- Run only one job for checks
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sat Jul 19 14:23:59 UTC 2014 - jengelh@inai.de
|
||||
|
||||
- Utilize shared library package naming guidelines
|
||||
(split gsl -> gsl,libgsl0)
|
||||
- Set RPM groups
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Sep 9 19:46:07 UTC 2013 - badshah400@gmail.com
|
||||
|
||||
- Update to version 1.16:
|
||||
+ fixed error in gsl_rng_fwrite where uninitialized padding
|
||||
bytes were being written (bug #39104)
|
||||
+ fixed error in gsl_block_alloc where padding bytes were not
|
||||
properly initialized (bugs #39101,#39102,#39103)
|
||||
+ fixed error in ntuple/test.c where padding bytes were not
|
||||
properly initialized (bug #39105)
|
||||
+ fixed triangle selection bug in gsl_sf_coupling_6j_e and
|
||||
gsl_sf_coupling_9j_e (bugs #39466 and #29606)
|
||||
+ added higher level wrapper routine
|
||||
gsl_multifit_fdfsolver_driver
|
||||
+ converted gsl_multifit_linear_residuals to use dgemv to
|
||||
improve efficiency (bug #39153)
|
||||
+ added functions gsl_stats_spearman and gsl_sort_vector2 to
|
||||
compute Spearman rank correlation
|
||||
+ added function gsl_poly_dd_hermite_init for Hermite
|
||||
interpolation
|
||||
+ Added support for robust linear least squares
|
||||
+ Added function gsl_linalg_SV_leverage for computing
|
||||
statistical leverages from SVD decomposition
|
||||
+ Added support for approximating the Jacobian of nonlinear least
|
||||
squares fits using forward finite differences
|
||||
+ Extended gsl_sf_coupling_3j to allow larger range and to
|
||||
handle the special case (ja jb jc; 0 0 0)=0 when ja+jb+jc is
|
||||
odd
|
||||
+ Fixed gsl_sf_mathieu_se_array to return zero when the order is
|
||||
zero [bug #33679]
|
||||
+ Fixed overflow in gsl_sf_lncosh for large negative x (x<-354)
|
||||
+ Improved gsl_ran_negative_binomial_pdf to avoid
|
||||
underflow/overflow for large arguments
|
||||
+ Multisets now allow k strictly greater than n
|
||||
+ Fixed gsl_matrix_complex_fwrite/fread failure for
|
||||
noncontiguous matrices
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Jun 29 07:10:33 UTC 2012 - coolo@suse.com
|
||||
|
||||
- the buildrequire for specific gcc libraries seems unneeded (and broke)
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Mar 28 18:16:16 CEST 2012 - pth@suse.de
|
||||
|
||||
- Remove the unneccessary -fno-strict-aliasing.
|
||||
- Replace FSF address in headers by link to the FSF licenses web
|
||||
page.
|
||||
- prefix all patch files with a 'gsl-'
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Feb 28 11:58:37 UTC 2012 - idonmez@suse.com
|
||||
|
||||
- Disable FMA support, see the following message for details:
|
||||
http://lists.gnu.org/archive/html/bug-gsl/2011-11/msg00019.html
|
||||
- Still disable %check on i586 because it fails.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sat Feb 4 17:19:18 UTC 2012 - jengelh@medozas.de
|
||||
|
||||
- Remove redundant tags/sections (see specfile guidelines)
|
||||
- Parallel build with %_smp_mflags
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sat Feb 4 17:13:11 UTC 2012 - jengelh@medozas.de
|
||||
|
||||
- Remove redundant tags/sections (see specfile guidelines)
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sat Oct 15 04:47:13 UTC 2011 - coolo@suse.com
|
||||
|
||||
- add libtool as buildrequire to make the spec file more reliable
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sat Oct 1 01:08:56 UTC 2011 - crrodriguez@opensuse.org
|
||||
|
||||
- Workaround qemu-arm bugs.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Sep 29 08:01:43 UTC 2011 - andrea.turrini@gmail.com
|
||||
|
||||
- Made descriptions in gls.spec more readable
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sun Jul 17 10:18:18 UTC 2011 - badshah400@gmail.com
|
||||
|
||||
- Update to 1.15: New functions, improvements and bug-fixes; see
|
||||
NEWS for full list
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Dec 8 08:40:55 UTC 2010 - kkaempf@novell.com
|
||||
|
||||
- Update to 1.14
|
||||
Bugfixes, improvements and new functions. See NEWS for full list.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Dec 6 13:51:36 UTC 2010 - kkaempf@novell.com
|
||||
|
||||
- Fix build on non-SUSE distros
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Dec 6 10:30:41 UTC 2010 - kkaempf@novell.com
|
||||
|
||||
- Add pkg-config to BuildRequires so pkgconfig(gsl) gets created
|
||||
as provides of the -devel package
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Feb 11 17:47:24 CET 2010 - rguenther@suse.de
|
||||
|
||||
- Drop all fancy compile flags as long as we need -fno-strict-aliasing.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Jul 30 17:57:56 CEST 2009 - garloff@suse.de
|
||||
|
||||
- Run make check on all archs, relax precision for qawc elist on x86.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Jul 30 11:37:34 CEST 2009 - aj@suse.de
|
||||
|
||||
- Update to gsl-1.12:
|
||||
* Many bugfixes (see NEWS for full list)
|
||||
* Improvements: faster simplex mininimser gsl_multimin_fminimizer_nmsimplex2,
|
||||
gsl_monte_vegas to avoid catastrophic cancellation,
|
||||
* New functions: gsl_bspline_eval_deriv, new auxiliary functions
|
||||
gsl_cheb_order, gsl_cheb_size, gsl_cheb_coeffs for Chebyshev series,
|
||||
gsl_vector_complex_{isnonneg,add,sub,mul, div,scale,add_constant}
|
||||
and gsl_matrix_complex_float_isnonn, gsl_linalg_cholesky_invert
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Jul 28 15:16:32 CEST 2009 - aj@suse.de
|
||||
|
||||
- Fix build - disable html generation which fails.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Jan 14 00:09:09 CET 2009 - crrodriguez@suse.de
|
||||
|
||||
- remove static libraries and "la" files
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Aug 22 23:08:44 CEST 2008 - garloff@suse.de
|
||||
|
||||
- Update to gsl-1.11:
|
||||
* Bugfixes (underflow in ODE solver, overflow in
|
||||
gsl_cdf_hypergeometric_{P,Q}, brent_minimiser)
|
||||
* Improvements (asymptotic regime in gsl_sf_bessel_jl,
|
||||
large arguments in cum. distr. functions using incomplete beta
|
||||
function, missing error terms in gsl_sf_exp_mult_e10_e,
|
||||
gsl_sf_hyperg_2F1 now handles x==1, gsl_ldexp and gsl_frexp,
|
||||
gsl_multiroots_test_delta)
|
||||
* Optimizations in gsl_ran_gaussian_ziggurat.
|
||||
* New function gsl_multifit_linear_residuals.
|
||||
* Updated some constants to match CODATA 2006 values.
|
||||
- Update to gsl-1.10:
|
||||
* The package license changed from GNU GPL v2 or later to
|
||||
GNU GPL v3 or later!
|
||||
* Support for generalized eigensystems.
|
||||
* gsl_stats_correlation computes Pearson correlation of two data sets
|
||||
* New functions: gsl_sf_expint(n,x), gsl_{vector,matrix}_isnonneg,
|
||||
gsl_matrix_sub{row,column}
|
||||
* Cholesky routines now handle complex matrices
|
||||
* Many other improvements and additions, see NEWS for a detailed list.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Nov 7 11:29:55 CET 2007 - garloff@suse.de
|
||||
|
||||
- disable -fstack-protector (we don't want it for HPC code)
|
||||
- avoid wrapping assumption sort testcase (gcc-4.3 fix)
|
||||
- move make check to %check section
|
||||
- require gsl = %{version} from -devel package
|
||||
- call install-info in -devel %post/%postun
|
||||
- add note on license
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Apr 16 16:26:33 CEST 2007 - dmueller@suse.de
|
||||
|
||||
- run autoreconf
|
||||
- fix devel package requires
|
||||
- run ldconfig
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue Mar 13 09:16:30 CET 2007 - garloff@suse.de
|
||||
|
||||
- Update to gsl-1.9:
|
||||
* Fixed the elliptic integrals F,E,P,D so that they have the
|
||||
correct behavior for phi > pi/2 and phi < 0.
|
||||
* New BFGS minimisation method gsl_multimin_fdfminimizer_vector_bfgs2
|
||||
based on the algorithm given by R.Fletcher in "Practical Methods
|
||||
of Optimisation" (2nd ed).
|
||||
* Beta functions gsl_sf_beta_e(a,b) and gsl_sf_lnbeta_e(a,b) now
|
||||
handle negative arguments a,b. New function gsl_sf_lnbeta_sgn_e
|
||||
for computing magnitude and sign of negative beta values.
|
||||
* gsl_cheb_eval_mode now uses the same error estimate as
|
||||
gsl_cheb_eval_err.
|
||||
* Improved gsl_sf_legendre_sphPlm_e to avoid underflow with large
|
||||
arguments.
|
||||
* Added updated Knuth generator, gsl_rng_knuthran2002, from 9th
|
||||
printing of "The Art of Computer Programming". See
|
||||
http://www-cs-faculty.stanford.edu/~knuth/news02.htm
|
||||
* The functions gsl_multifit_fsolver_set, gsl_multifit_fdfsolver_set
|
||||
and gsl_multiroot_fsolver_set, gsl_multiroot_fdfsolver_set now
|
||||
have a const qualifier for the input vector x.
|
||||
* gsl_sf_expint_E2(x) now returns the correct value 1 for x==0,
|
||||
instead of NaN.
|
||||
* The gsl_ran_gamma function now uses the Marsaglia-Tsang fast gamma
|
||||
method of gsl_ran_gamma_mt by default.
|
||||
* The matrix and vector min/max functions now always propagate any
|
||||
NaNs in their input.
|
||||
* Prevented NaN occuring for extreme parameters in
|
||||
gsl_cdf_fdist_{P,Q}inv and gsl_cdf_beta_{P,Q}inv
|
||||
* Corrected error estimates for the angular reduction functions
|
||||
gsl_sf_angle_restrict_symm_err and gsl_sf_angle_restrict_pos_err.
|
||||
* Corrected an error in the higher digits of M_PI_4 (this was beyond
|
||||
the limit of double precision, so double precision results are not
|
||||
affected).
|
||||
* gsl_root_test_delta now always returns success if two iterates are
|
||||
the same, x1==x0.
|
||||
* A Japanese translation of the reference manual is now available
|
||||
from the GSL webpage at http://www.gnu.org/software/gsl/ thanks to
|
||||
Daisuke TOMINAGA.
|
||||
* Added new functions for basis splines, see the "Basis Splines"
|
||||
chapter in the GSL Reference Manual for details.
|
||||
* Added new functions for testing the sign of vectors and matrices,
|
||||
gsl_vector_ispos, gsl_vector_isneg, gsl_matrix_ispos and
|
||||
gsl_matrix_isneg.
|
||||
* Fixed a bug in gsl_sf_lnpoch_e and gsl_sf_lnpoch_sgn_e which caused
|
||||
the incorrect value 1.0 instead of 0.0 to be returned for x==0.
|
||||
* Fixed cancellation error in gsl_sf_laguerre_n for n > 1e7 so that
|
||||
larger arguments can be calculated without loss of precision.
|
||||
* Improved gsl_sf_zeta_e to return exactly zero for negative even
|
||||
integers, avoiding less accurate trigonometric reduction.
|
||||
* Fixed a bug in gsl_sf_zetam1_int_e where 0 was returned instead of
|
||||
-1 for negative even integer arguments.
|
||||
* When the differential equation solver gsl_odeiv_apply encounters a
|
||||
singularity it returns the step-size which caused the error code from
|
||||
the user-defined function, as opposed to leaving the step-size
|
||||
unchanged.
|
||||
* Added support for nonsymmetric eigensystems
|
||||
* Added Mathieu functions
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Feb 7 14:05:18 CET 2007 - garloff@suse.de
|
||||
|
||||
- -l2h and BuildRequire latex2html for formulas in manual (#242160).
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Nov 24 00:39:14 CET 2006 - garloff@suse.de
|
||||
|
||||
- -momit-leaf-frame-pointer was only enabled on x86_64 and i386;
|
||||
however, it should have been enabled on all ix86. Fixed.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Oct 16 14:57:00 CEST 2006 - garloff@suse.de
|
||||
|
||||
- Don't use -ffast-math any more (-ffast-math was enabled on x86,
|
||||
x86-64) as otherwise we get inexact (8e-8) results with latest
|
||||
compiler for log1p(1e-10), div by zero, SVD.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Aug 25 09:22:13 CEST 2006 - garloff@suse.de
|
||||
|
||||
- Update to gsl-1.8.
|
||||
- Enable make check in build process.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Feb 20 12:35:06 CET 2006 - stbinner@suse.de
|
||||
|
||||
- make gsl-devel depend on gsl
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Jan 25 21:36:21 CET 2006 - mls@suse.de
|
||||
|
||||
- converted neededforbuild to BuildRequires
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Dec 19 17:37:38 CET 2005 - garloff@suse.de
|
||||
|
||||
- Split package into gsl and gsl-devel.
|
||||
- Update to gsl-1.7:
|
||||
* Various speedups, accuracy improvements and fixes.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Apr 25 15:23:01 CEST 2005 - coolo@suse.de
|
||||
|
||||
- fix library dependencies - at least needed for prelink
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Jan 31 15:32:11 CET 2005 - ro@suse.de
|
||||
|
||||
- adapted to texi2html changes
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Jan 20 17:51:06 CET 2005 - garloff@suse.de
|
||||
|
||||
- Remove -momit-frame-pointer from most archs, the compiler does
|
||||
not support it there.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Jan 19 16:20:37 CET 2005 - garloff@suse.de
|
||||
|
||||
- Avoid uninitialized variables, and fix a size_t vs. unsigned
|
||||
int issue.
|
||||
- Update to gsl-1.6:
|
||||
* Wavelet functions
|
||||
* LQ decomposition
|
||||
* Various bugfixes and minor improvements (SYRK, HERK,
|
||||
swap_vectors, cheb_eval_n_err, sf_gamma_inc, cspline,
|
||||
akima, ode-initval, sf_psi_1, sf_expint_Ei_e, cdf_beta_X,
|
||||
eigen_jacobi, error stream flushes prior to abort).
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sat Aug 21 00:35:29 CEST 2004 - garloff@suse.de
|
||||
|
||||
- Fix build on non-x86/x86-64 (no -monit-leaf-frame-pointer).
|
||||
- Allow parallel build.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sun Aug 15 01:10:10 CEST 2004 - garloff@suse.de
|
||||
|
||||
- Update to version 1.5.
|
||||
- More aggressive compiler optimization flags.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue May 18 02:18:06 CEST 2004 - ro@suse.de
|
||||
|
||||
- use -fno-strict-aliasing
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Feb 25 15:17:21 CET 2004 - stepan@suse.de
|
||||
|
||||
- update to version 1.4
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Sat Jan 10 11:11:14 CET 2004 - adrian@suse.de
|
||||
|
||||
- add %defattr
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Tue May 27 14:30:02 CEST 2003 - ro@suse.de
|
||||
|
||||
- add pkgconfig file to filelist
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Jan 15 23:16:40 CET 2003 - garloff@suse.de
|
||||
|
||||
- bzip2 sources
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed Jan 15 22:36:27 CET 2003 - garloff@suse.de
|
||||
|
||||
- Update to gsl-1.3:
|
||||
* Fixed gsl_sf_coupling
|
||||
* exponential integral exp(-x)*Ei(x)
|
||||
* many bugfixes
|
||||
- Update to gsl-1.2:
|
||||
* new functions for combining permutations etc.
|
||||
* multiroot functions
|
||||
* dflt error handler outputs message before aborting
|
||||
* gsl_linalg_SV_decomp handles exact zeros now
|
||||
* unsymmetric tridiagonal solvers added
|
||||
* bugfixes
|
||||
- Update to gsl-1.1.1:
|
||||
* bugfixes
|
||||
- Update to gsl-1.1:
|
||||
* permutation copy function
|
||||
* gsl_sf_gamma_inc improved
|
||||
* IEEE handling of FP numbers tested in configure
|
||||
* gsl_histogram_sum
|
||||
* More physical constants (r_B, eps_0)
|
||||
* Knuth's random number generators
|
||||
* bugfixes
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Jul 5 10:25:04 CEST 2002 - kukuk@suse.de
|
||||
|
||||
- Use %ix86 macro
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Wed May 8 15:51:29 MEST 2002 - garloff@suse.de
|
||||
|
||||
- Fix %lib64 issues
|
||||
- Remove -freduce-all-givs from compiler flags.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Mon Dec 10 02:53:25 MET 2001 - garloff@suse.de
|
||||
|
||||
- Creation of gsl-1.0
|
||||
- Produce and install HTML docu
|
||||
|
||||
64
gsl.keyring
Normal file
64
gsl.keyring
Normal file
|
|
@ -0,0 +1,64 @@
|
|||
Member GPG keyring of gsl group.
|
||||
|
||||
Note that this keyring is not intended for checking releases of that group.
|
||||
Use Group Release Keyring instead.
|
||||
|
||||
GPG keys of Patrick Alken <psa>
|
||||
-----BEGIN PGP PUBLIC KEY BLOCK-----
|
||||
Version: GnuPG v2.0.14 (GNU/Linux)
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||||
|
||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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||||
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||||
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|
||||
=sAxL
|
||||
-----END PGP PUBLIC KEY BLOCK-----
|
||||
|
||||
GPG keys of Mark Galassi <markgalassi>
|
||||
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|
||||
Version: GnuPG v1.2.5 (GNU/Linux)
|
||||
|
||||
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||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
=j2pb
|
||||
-----END PGP PUBLIC KEY BLOCK-----
|
||||
|
||||
438
gsl.spec
Normal file
438
gsl.spec
Normal file
|
|
@ -0,0 +1,438 @@
|
|||
#
|
||||
# spec file
|
||||
#
|
||||
# Copyright (c) 2023 SUSE LLC
|
||||
#
|
||||
# All modifications and additions to the file contributed by third parties
|
||||
# remain the property of their copyright owners, unless otherwise agreed
|
||||
# upon. The license for this file, and modifications and additions to the
|
||||
# file, is the same license as for the pristine package itself (unless the
|
||||
# license for the pristine package is not an Open Source License, in which
|
||||
# case the license is the MIT License). An "Open Source License" is a
|
||||
# license that conforms to the Open Source Definition (Version 1.9)
|
||||
# published by the Open Source Initiative.
|
||||
|
||||
# Please submit bugfixes or comments via https://bugs.opensuse.org/
|
||||
#
|
||||
|
||||
|
||||
%global flavor @BUILD_FLAVOR@%{nil}
|
||||
|
||||
%define pname gsl
|
||||
%define vers 2.7.1
|
||||
%define _vers 2_7_1
|
||||
%define lgsl_so_v 27
|
||||
%define lgslcblas_so_v 0
|
||||
|
||||
%if "%{flavor}" == ""
|
||||
ExclusiveArch: do_not_build
|
||||
%define package_name %pname
|
||||
%bcond_with hpc
|
||||
%endif
|
||||
|
||||
%if "%{flavor}" == "serial"
|
||||
%bcond_with hpc
|
||||
%define manext .gz
|
||||
%endif
|
||||
|
||||
%if "%{flavor}" == "gnu-hpc"
|
||||
%define compiler_family gnu
|
||||
%undefine c_f_ver
|
||||
%define manext %{nil}
|
||||
%bcond_without hpc
|
||||
%endif
|
||||
|
||||
%if "%{flavor}" == "gnu6-hpc"
|
||||
%define compiler_family gnu
|
||||
%define c_f_ver 6
|
||||
%define manext %{nil}
|
||||
%bcond_without hpc
|
||||
%endif
|
||||
|
||||
%if "%{flavor}" == "gnu7-hpc"
|
||||
%define compiler_family gnu
|
||||
%define c_f_ver 7
|
||||
%define manext %{nil}
|
||||
%bcond_without hpc
|
||||
%endif
|
||||
|
||||
%if "%{flavor}" == "gnu8-hpc"
|
||||
%define compiler_family gnu
|
||||
%define c_f_ver 8
|
||||
%define manext %{nil}
|
||||
%bcond_without hpc
|
||||
%endif
|
||||
|
||||
%if "%{flavor}" == "gnu9-hpc"
|
||||
%define compiler_family gnu
|
||||
%define c_f_ver 9
|
||||
%define manext %{nil}
|
||||
%bcond_without hpc
|
||||
%endif
|
||||
|
||||
%if "%{flavor}" == "gnu10-hpc"
|
||||
%define compiler_family gnu
|
||||
%define c_f_ver 10
|
||||
%define manext %{nil}
|
||||
%bcond_without hpc
|
||||
%endif
|
||||
|
||||
%if %{without hpc}
|
||||
%if 0%{!?package_name:1}
|
||||
%define package_name %{pname}
|
||||
%endif
|
||||
%define p_prefix %_prefix
|
||||
%define p_includedir %_includedir/%pname
|
||||
%define p_libdir %_libdir
|
||||
%define p_bindir %_bindir
|
||||
%define p_mandir %_mandir
|
||||
%define p_datadir %_datadir
|
||||
%define p_infodir %_infodir
|
||||
%define num_threads 64
|
||||
%define libname lib%{pname}%{lgsl_so_v}
|
||||
%define libcblas lib%{pname}cblas%{lgslcblas_so_v}
|
||||
|
||||
%else
|
||||
|
||||
%{hpc_init -c %{compiler_family} %{?c_f_ver:-v %{c_f_ver}} %{?ext:-e %{ext}}}
|
||||
%define package_name %{hpc_package_name %_vers}
|
||||
|
||||
%define p_prefix %hpc_prefix
|
||||
%define p_includedir %hpc_includedir
|
||||
%define p_libdir %hpc_libdir
|
||||
%define p_bindir %hpc_bindir
|
||||
%define p_mandir %hpc_mandir
|
||||
%define p_datadir %hpc_datadir
|
||||
%define p_infodir %hpc_infodir
|
||||
%define num_threads 256
|
||||
%define libname lib%{package_name}
|
||||
%define libcblas lib%{pname}cblas%{hpc_package_name_tail %{_vers}}
|
||||
|
||||
%endif
|
||||
|
||||
Name: %{package_name}
|
||||
Version: %{vers}
|
||||
Release: 0
|
||||
Summary: GNU Scientific Library
|
||||
License: GPL-3.0-or-later
|
||||
Group: Productivity/Scientific/Math
|
||||
URL: https://www.gnu.org/software/%{pname}/
|
||||
Source0: https://ftp.gnu.org/pub/gnu/%{pname}/%{pname}-%{version}.tar.gz
|
||||
Source1: https://ftp.gnu.org/pub/gnu/%{pname}/%{pname}-%{version}.tar.gz.sig
|
||||
Source2: https://savannah.gnu.org/project/memberlist-gpgkeys.php?group=gsl&download=1#/%{pname}.keyring
|
||||
Patch6: gsl-qawc-test-x86-precision.diff
|
||||
Patch7: gsl-disable-fma.patch
|
||||
Patch8: 989a193268b963aa1047814f7f1402084fb7d859.patch
|
||||
BuildRequires: autoconf
|
||||
BuildRequires: automake
|
||||
BuildRequires: libtool
|
||||
BuildRequires: pkgconfig
|
||||
|
||||
%if %{without hpc}
|
||||
BuildRequires: update-alternatives
|
||||
Requires(post): update-alternatives
|
||||
Requires(preun):update-alternatives
|
||||
%else
|
||||
BuildRequires: %{compiler_family}%{?c_f_ver}-compilers-hpc-macros-devel
|
||||
BuildRequires: lua-lmod
|
||||
BuildRequires: suse-hpc
|
||||
Requires: %{libname} = %version
|
||||
%global dep_summary %{summary}
|
||||
%endif
|
||||
|
||||
%description
|
||||
The GNU Scientific Library (GSL) is a collection of routines for
|
||||
numerical computing. The routines are written from scratch by the GSL
|
||||
team in ANSI C and present an Applications Programming Interface
|
||||
(API) for C programmers, while allowing wrappers to be written for very
|
||||
high level languages.
|
||||
|
||||
%package -n %{libname}
|
||||
Summary: GNU Scientific Library
|
||||
Group: System/Libraries
|
||||
%if %{with hpc}
|
||||
%{hpc_requires}
|
||||
BuildRequires: lua-lmod
|
||||
Requires: %{name}-module = %version
|
||||
%endif
|
||||
|
||||
%{?with_hpc:%{hpc_master_package}}
|
||||
|
||||
%description -n %{libname}
|
||||
The GNU Scientific Library (GSL) is a collection of routines for
|
||||
numerical computing. The routines are written from scratch by the GSL
|
||||
team in ANSI C and present an Applications Programming Interface
|
||||
(API) for C programmers, while allowing wrappers to be written for very
|
||||
high level languages.
|
||||
|
||||
The library covers the following areas:
|
||||
|
||||
Complex Numbers - Roots of Polynomials - Special Functions -
|
||||
Vectors and Matrices - Permutations - Sorting - BLAS Support -
|
||||
Linear Algebra - Eigensystems - Fast Fourier Transforms - Quadrature -
|
||||
Random Numbers - Quasi-Random Sequences - Random Distributions -
|
||||
Statistics - Histograms - N-Tuples - Monte Carlo Integration -
|
||||
Simulated Annealing - Differential Equations - Interpolation -
|
||||
Numerical Differentiation - Chebyshev Approximation - Series Acceleration -
|
||||
Discrete Hankel Transforms - Root-Finding - Minimization -
|
||||
Least-Squares Fitting - Physical Constants - IEEE Floating-Point
|
||||
|
||||
%{?with_hpc:%{hpc_master_package -l -L}}
|
||||
|
||||
%package -n %{libcblas}
|
||||
Summary: A standard C language APIs for BLAS from GNU Scientific Library
|
||||
# file conflict, see boo#991155
|
||||
Group: System/Libraries
|
||||
Obsoletes: libgsl0
|
||||
%if %{with hpc}
|
||||
%{hpc_requires}
|
||||
Requires: %{name}-module = %version
|
||||
%endif
|
||||
|
||||
%description -n %{libcblas}
|
||||
This library provides a native C interface to BLAS routines. This is part of
|
||||
the GNU Scientific Library.
|
||||
|
||||
%{?with_hpc:%{hpc_master_package -L -l -n lib%{pname}cblas%{hpc_package_name_tail} -N %{pname}cblas}}
|
||||
|
||||
%package devel
|
||||
Summary: Development files for the GNU Scientific Library
|
||||
Group: Development/Libraries/C and C++
|
||||
Requires: %{libcblas} = %{version}
|
||||
Requires: %{libname} = %{version}
|
||||
Requires(pre): %{install_info_prereq}
|
||||
%{?with_hpc:%hpc_requires_devel}
|
||||
|
||||
%description devel
|
||||
This package contains the headers, static libraries and some
|
||||
documentation for GSL.
|
||||
|
||||
The GNU Scientific Library (GSL) is a collection of routines for
|
||||
numerical computing. The routines are written from scratch by the GSL
|
||||
team in ANSI C, and present an Applications Programming Interface
|
||||
(API) for C programmers, while allowing wrappers to be written for very
|
||||
high level languages.
|
||||
|
||||
%{?with_hpc:%{hpc_master_package -L devel}}
|
||||
|
||||
%package doc
|
||||
Summary: Documentation for the GNU Scientific Library
|
||||
Group: Documentation/Other
|
||||
Requires(post): %{install_info_prereq}
|
||||
Requires(preun):%{install_info_prereq}
|
||||
BuildArch: noarch
|
||||
|
||||
%description doc
|
||||
This package contains documentation for GSL
|
||||
|
||||
The GNU Scientific Library (GSL) is a collection of routines for
|
||||
numerical computing. The routines are written from scratch by the GSL
|
||||
team in ANSI C, and present an Applications Programming Interface
|
||||
(API) for C programmers, while allowing wrappers to be written for very
|
||||
high level languages.
|
||||
|
||||
%{?with_hpc:%{hpc_master_package doc}}
|
||||
|
||||
%package examples
|
||||
Summary: Examples for the GNU Scientific Library
|
||||
Group: Documentation/Other
|
||||
BuildArch: noarch
|
||||
|
||||
%description examples
|
||||
This package contains examples for GSL
|
||||
|
||||
|
||||
%if %{with hpc}
|
||||
%package module
|
||||
Summary: Module files for %{name}
|
||||
# Package can not be noarch, as this will lead to the situation, so
|
||||
# that sometimes 32bit rpm is used with %%{_lib}=lib or 64 bit, where
|
||||
# %%{_lib}=lib64
|
||||
Group: Development/Libraries/Parallel
|
||||
|
||||
%description module
|
||||
This package contains the environment module needed for the GSL
|
||||
library packages.
|
||||
%endif
|
||||
# module package only installed thru dependency. No master package
|
||||
|
||||
%prep
|
||||
%setup -q -n %{pname}-%{version}
|
||||
%patch6
|
||||
%patch7 -p1
|
||||
%patch8 -p1
|
||||
|
||||
%build
|
||||
|
||||
%if %{with hpc}
|
||||
%hpc_debug
|
||||
%hpc_setup
|
||||
%endif
|
||||
|
||||
autoreconf -fiv
|
||||
export CFLAGS="%{optflags}"
|
||||
%if %{without hpc}
|
||||
%configure \
|
||||
%else
|
||||
%hpc_configure \
|
||||
%endif
|
||||
--disable-static \
|
||||
--enable-shared \
|
||||
--with-gnu-ld
|
||||
make %{?_smp_mflags}
|
||||
|
||||
%check
|
||||
# On i586 this still fails
|
||||
%ifarch %{ix86}
|
||||
make %{?_smp_mflags} check || ( find -name \*.log -print -exec cat {} \; ; exit 0 )
|
||||
%else
|
||||
make %{?_smp_mflags} check || ( find -name \*.log -print -exec cat {} \; ; exit 1 )
|
||||
%endif
|
||||
# Clean up to package directory
|
||||
make -C doc/examples clean
|
||||
chmod a-x doc/examples/*
|
||||
rm doc/examples/Makefile*
|
||||
|
||||
%install
|
||||
%{?with_hpc:%hpc_setup}
|
||||
|
||||
%make_install
|
||||
find %{buildroot} -type f -name "*.la" -delete -print
|
||||
rm -f %{buildroot}%{p_infodir}/dir
|
||||
|
||||
%if %{with hpc}
|
||||
%{hpc_write_pkgconfig}
|
||||
%{hpc_write_pkgconfig -n %{pname}cblas -l %{pname}cblas}
|
||||
|
||||
%hpc_write_modules_files
|
||||
#%%Module1.0#####################################################################
|
||||
|
||||
proc ModulesHelp { } {
|
||||
|
||||
puts stderr " "
|
||||
puts stderr "This module loads the %{pname} library built with the %{compiler_family} compiler toolchain."
|
||||
puts stderr "\nVersion %{version}\n"
|
||||
|
||||
}
|
||||
module-whatis "Name: %{pname} built with %{compiler_family} toolchain"
|
||||
module-whatis "Version: %{version}"
|
||||
module-whatis "Category: runtime library"
|
||||
module-whatis "Description: %{SUMMARY}"
|
||||
module-whatis "%{url}"
|
||||
|
||||
set version %{version}
|
||||
|
||||
prepend-path PATH %{hpc_bindir}
|
||||
prepend-path LD_LIBRARY_PATH %{hpc_libdir}
|
||||
|
||||
setenv %{hpc_upcase %pname}_DIR %{hpc_prefix}
|
||||
setenv %{hpc_upcase %pname}_BIN %{hpc_bindir}
|
||||
setenv %{hpc_upcase %pname}_LIB %{hpc_libdir}
|
||||
|
||||
prepend-path LIBRARY_PATH %{hpc_libdir}
|
||||
prepend-path MANPATH %{hpc_mandir}
|
||||
prepend-path INFOPATH %{hpc_infodir}
|
||||
if {[file isdirectory %{hpc_includedir}]} {
|
||||
prepend-path CPATH %{hpc_includedir}
|
||||
prepend-path C_INCLUDE_PATH %{hpc_includedir}
|
||||
prepend-path CPLUS_INCLUDE_PATH %{hpc_includedir}
|
||||
prepend-path INCLUDE %{hpc_includedir}
|
||||
%hpc_modulefile_add_pkgconfig_path
|
||||
|
||||
setenv %{hpc_upcase %pname}_INC %{hpc_includedir}
|
||||
}
|
||||
|
||||
family "%pname"
|
||||
|
||||
EOF
|
||||
%endif
|
||||
|
||||
%if %{without hpc}
|
||||
%post -n %{libname} -p /sbin/ldconfig
|
||||
%postun -n %{libname} -p /sbin/ldconfig
|
||||
%post -n %{libcblas} -p /sbin/ldconfig
|
||||
%postun -n %{libcblas} -p /sbin/ldconfig
|
||||
%else
|
||||
|
||||
%post -n %{libname}
|
||||
/sbin/ldconfig -N %{p_libdir}
|
||||
|
||||
%postun -n %{libname}
|
||||
/sbin/ldconfig -N %{p_libdir}
|
||||
|
||||
%post -n %{libcblas}
|
||||
/sbin/ldconfig -N %{p_libdir}
|
||||
|
||||
%postun -n %{libcblas}
|
||||
/sbin/ldconfig -N %{p_libdir}
|
||||
|
||||
%postun -n %{name}-module
|
||||
%hpc_module_delete_if_default
|
||||
%endif
|
||||
|
||||
%if %{with hpc}
|
||||
%files module
|
||||
%hpc_modules_files
|
||||
%endif
|
||||
|
||||
%files
|
||||
%license COPYING
|
||||
%{?with_hpc:%hpc_dirs}
|
||||
%{?with_hpc:%dir %p_bindir}
|
||||
%{p_bindir}/gsl-histogram
|
||||
%{p_bindir}/gsl-randist
|
||||
%{?with_hpc:%dir %{p_mandir}}
|
||||
%{?with_hpc:%dir %{p_mandir}/man1}
|
||||
%{p_mandir}/man1/gsl-histogram.1%{?manext}
|
||||
%{p_mandir}/man1/gsl-randist.1%{?manext}
|
||||
|
||||
%files -n %{libname}
|
||||
%{?with_hpc:%hpc_dirs}
|
||||
%{?with_hpc:%dir %p_libdir}
|
||||
%{p_libdir}/libgsl.so.*
|
||||
|
||||
%files -n %{libcblas}
|
||||
%{?with_hpc:%hpc_dirs}
|
||||
%{p_libdir}/libgslcblas.so.*
|
||||
|
||||
%files devel
|
||||
%license COPYING
|
||||
%{?with_hpc:%hpc_dirs}
|
||||
%{p_includedir}
|
||||
%{?with_hpc:%dir %{p_includedir}/gsl}
|
||||
%{p_libdir}/libgsl*.so
|
||||
%if %{without hpc}
|
||||
%{p_libdir}/pkgconfig/gsl.pc
|
||||
%else
|
||||
%{hpc_pkgconfig_file}
|
||||
%{hpc_pkgconfig_file -N -n %{pname}cblas}
|
||||
%endif
|
||||
%{p_bindir}/gsl-config
|
||||
%{?with_hpc:%dir %p_datadir}
|
||||
%dir %{p_datadir}/aclocal
|
||||
%{p_datadir}/aclocal/gsl.m4
|
||||
%{p_mandir}/man1/gsl-config.1%{?manext}
|
||||
%{?with_hpc:%dir %{p_mandir}/man3}
|
||||
%{p_mandir}/man3/gsl.3%{?manext}
|
||||
|
||||
%files examples
|
||||
%doc doc/examples
|
||||
%license COPYING
|
||||
|
||||
%files doc
|
||||
%doc AUTHORS BUGS ChangeLog NEWS README THANKS TODO
|
||||
%license COPYING
|
||||
%if %{with hpc}
|
||||
%dir %{hpc_install_path_base}
|
||||
%dir %{hpc_install_path}
|
||||
%dir %{p_infodir}
|
||||
%endif
|
||||
%{p_infodir}/gsl-ref*
|
||||
|
||||
%post doc
|
||||
%install_info --info-dir=%{p_infodir} %{p_infodir}/gsl-ref.info%{ext_info}
|
||||
|
||||
%preun doc
|
||||
%install_info_delete --info-dir=%{p_infodir} %{p_infodir}/gsl-ref.info%{ext_info}
|
||||
|
||||
%changelog
|
||||
Loading…
Reference in New Issue
Block a user