Accepting request 731701 from devel:languages:perl:autoupdate

- Add build dependency Gd
- Remove deps.patch (not used anymore)
- updated to 1.7.6
   see /usr/share/doc/packages/perl-BioPerl/Changes
  1.7.6     2019-08-28 12:37:01+01:00 Europe/London
  
      * The program bp_classify_hits_kingdom has been removed and is
        now part of the examples documentation instead.
  
      * GD is now listed as a suggestion instead of a requirement.  The
        bp_chaos_plot program will now work with the GD module.
  
      * New method Bio::Tree::Statistics::transfer_bootstrap_expectation
        to compute Transfer Bootstrap Expectation (TBE) for internal
        nodes based on the methods outlined in Lemoine et al, Nature,
        2018.
  
      * New method Bio::SeqIO::fasta::next_seq_fast to retrieve next
        sequence in the stream faster but not perfect.

OBS-URL: https://build.opensuse.org/request/show/731701
OBS-URL: https://build.opensuse.org/package/show/devel:languages:perl/perl-BioPerl?expand=0&rev=8

BioPerl-1.7.5.tar.gz

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:4a96472004e35e11eafd1fa3b3966f1d18622de3afde3e2fa6765a2dbedb3a0a
-size 7512326

BioPerl-1.7.6.tar.gz

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:df2a3efc991b9b5d7cc9d038a1452c6dac910c9ad2a0e47e408dd692c111688d
+size 7514084

cpanspec.yml

@@ -10,8 +10,8 @@
 #patches:
 #  foo.patch: -p1
 #  bar.patch:
-#preamble: |-
+preamble: |-
-# BuildRequires:  gcc-c++
+  BuildRequires:  perl(GD)
 #post_prep: |-
 # hunspell=`pkg-config --libs hunspell | sed -e 's,-l,,; s,  *,,g'`
 # sed -i -e "s,hunspell-X,$hunspell," t/00-prereq.t Makefile.PL 

deps.patch

@@ -1,30 +0,0 @@
-Index: Build.PL
-===================================================================
---- Build.PL.orig
-+++ Build.PL
-@@ -138,11 +138,6 @@ my %recommends = (
-     'Text::ParseWords'          => [0,
-         'Test scripts/Bio::DB::SeqFeature::Store::FeatureFileLoader'],
-     
--    'URI::Escape'               => [0,
--        'Dealing with web resources/Bio::FeatureIO::gff,Bio::FeatureIO::interpro,'.
--        'Bio::DB::Biblio::eutils,Bio::DB::EUtilParameters,'.
--        'Bio::DB::Query::GenBank,Bio::DB::NCBIHelper,Bio::SeqFeature::Annotated'],
--    
-     'XML::DOM::XPath'           => [0.13,
-         'parsing interpro features/Bio::FeatureIO::interpro'],
-     
-@@ -195,10 +190,11 @@ my $build = Bio::Root::Build->new(
-                            },
-     
-     build_requires      => {
--                            'Test::More'                => 0,
-+                            'CPAN'                      => 1.81,
-                             'Module::Build'             => 0.2805,
-                             'Test::Harness'             => 2.62,
--                            'CPAN'                      => 1.81
-+                            'Test::More'                => 0,
-+                            'URI::Escape'               => 0
-                            },
-     
-     recommends          => {

perl-BioPerl.changes

@@ -1,3 +1,31 @@
+-------------------------------------------------------------------
+Wed Sep 18 09:48:31 UTC 2019 -  <timueller+perl@suse.de>
+
+- Add build dependency Gd
+- Remove deps.patch (not used anymore)
+
+-------------------------------------------------------------------
+Wed Sep 18 09:35:33 UTC 2019 -  <timueller+perl@suse.de>
+
+- updated to 1.7.6
+   see /usr/share/doc/packages/perl-BioPerl/Changes
+
+  1.7.6     2019-08-28 12:37:01+01:00 Europe/London
+  
+      * The program bp_classify_hits_kingdom has been removed and is
+        now part of the examples documentation instead.
+  
+      * GD is now listed as a suggestion instead of a requirement.  The
+        bp_chaos_plot program will now work with the GD module.
+  
+      * New method Bio::Tree::Statistics::transfer_bootstrap_expectation
+        to compute Transfer Bootstrap Expectation (TBE) for internal
+        nodes based on the methods outlined in Lemoine et al, Nature,
+        2018.
+  
+      * New method Bio::SeqIO::fasta::next_seq_fast to retrieve next
+        sequence in the stream faster but not perfect.
+
 -------------------------------------------------------------------
 Wed Apr  3 06:45:03 UTC 2019 - Stephan Kulow <coolo@suse.com>
 

perl-BioPerl.spec

@@ -17,7 +17,7 @@
 
 
 Name:           perl-BioPerl
-Version:        1.7.5
+Version:        1.7.6
 Release:        0
 %define cpan_name BioPerl
 Summary:        Perl modules for biology
@@ -30,10 +30,8 @@ BuildArch:      noarch
 BuildRoot:      %{_tmppath}/%{name}-%{version}-build
 BuildRequires:  perl
 BuildRequires:  perl-macros
-BuildRequires:  perl(DBI)
 BuildRequires:  perl(Data::Stag)
 BuildRequires:  perl(Error)
-BuildRequires:  perl(GD)
 BuildRequires:  perl(Graph::Directed)
 BuildRequires:  perl(HTTP::Request::Common)
 BuildRequires:  perl(HTTP::Response)
@@ -62,10 +60,8 @@ BuildRequires:  perl(XML::Writer)
 BuildRequires:  perl(YAML)
 BuildRequires:  perl(parent)
 BuildRequires:  perl(version)
-Requires:       perl(DBI)
 Requires:       perl(Data::Stag)
 Requires:       perl(Error)
-Requires:       perl(GD)
 Requires:       perl(Graph::Directed)
 Requires:       perl(HTTP::Request::Common)
 Requires:       perl(HTTP::Response)
@@ -93,6 +89,9 @@ Requires:       perl(YAML)
 Requires:       perl(parent)
 Requires:       perl(version)
 %{perl_requires}
+# MANUAL BEGIN
+BuildRequires:  perl(GD)
+# MANUAL END
 
 %description
 BioPerl is the product of a community effort to produce Perl code which is