Accepting request 690979 from devel:languages:perl:autoupdate
automatic update OBS-URL: https://build.opensuse.org/request/show/690979 OBS-URL: https://build.opensuse.org/package/show/devel:languages:perl/perl-BioPerl?expand=0&rev=7
This commit is contained in:
Stephan Kulow
committed by
Git OBS Bridge
Git OBS Bridge
parent
f913e351ae
commit
76b00da068
@@ -1,3 +0,0 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:17aa3aaab2f381bbcaffdc370002eaf28f2c341b538068d6586b2276a76464a1
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size 12362741
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3
BioPerl-1.7.5.tar.gz
Normal file
3
BioPerl-1.7.5.tar.gz
Normal file
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:4a96472004e35e11eafd1fa3b3966f1d18622de3afde3e2fa6765a2dbedb3a0a
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size 7512326
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@@ -1,3 +1,9 @@
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-------------------------------------------------------------------
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Wed Apr 3 06:45:03 UTC 2019 - Stephan Kulow <coolo@suse.com>
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- updated to 1.7.5
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see /usr/share/doc/packages/perl-BioPerl/Changes
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-------------------------------------------------------------------
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Thu Sep 27 16:11:06 UTC 2018 - Christian Wittmer <chris@computersalat.de>
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@@ -1,7 +1,7 @@
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#
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# spec file for package perl-BioPerl
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#
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# Copyright (c) 2018 SUSE LINUX GmbH, Nuernberg, Germany.
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# Copyright (c) 2019 SUSE LINUX GmbH, Nuernberg, Germany.
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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@@ -17,65 +17,81 @@
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Name: perl-BioPerl
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Version: 1.007002
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Version: 1.7.5
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Release: 0
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%define cpan_name BioPerl
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Summary: Perl Modules for Biology
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License: GPL-2.0-or-later OR Artistic-1.0
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Summary: Perl modules for biology
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License: Artistic-1.0 OR GPL-1.0-or-later
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Group: Development/Libraries/Perl
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Url: http://search.cpan.org/dist/BioPerl/
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Source0: https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/%{cpan_name}-%{version}.tar.gz
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Url: https://metacpan.org/release/%{cpan_name}
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Source0: https://cpan.metacpan.org/authors/id/C/CD/CDRAUG/%{cpan_name}-%{version}.tar.gz
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Source1: cpanspec.yml
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BuildArch: noarch
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BuildRoot: %{_tmppath}/%{name}-%{version}-build
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BuildRequires: perl
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BuildRequires: perl-macros
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BuildRequires: perl(CPAN) >= 1.81
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BuildRequires: perl(Data::Stag) >= 0.11
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BuildRequires: perl(ExtUtils::Manifest) >= 1.52
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BuildRequires: perl(DBI)
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BuildRequires: perl(Data::Stag)
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BuildRequires: perl(Error)
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BuildRequires: perl(GD)
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BuildRequires: perl(Graph::Directed)
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BuildRequires: perl(HTTP::Request::Common)
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BuildRequires: perl(HTTP::Response)
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BuildRequires: perl(IO::Scalar)
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BuildRequires: perl(IO::String)
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BuildRequires: perl(Module::Build) >= 0.420000
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BuildRequires: perl(Test::Harness) >= 2.62
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BuildRequires: perl(IPC::Run)
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BuildRequires: perl(LWP::UserAgent)
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BuildRequires: perl(List::MoreUtils)
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BuildRequires: perl(Module::Build)
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BuildRequires: perl(Set::Scalar)
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BuildRequires: perl(Test::Memory::Cycle)
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BuildRequires: perl(Test::Most)
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BuildRequires: perl(URI::Escape)
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Requires: perl(Data::Stag) >= 0.11
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Requires: perl(ExtUtils::Manifest) >= 1.52
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BuildRequires: perl(Test::RequiresInternet)
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BuildRequires: perl(Test::Weaken)
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BuildRequires: perl(URI)
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BuildRequires: perl(XML::DOM)
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BuildRequires: perl(XML::DOM::XPath)
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BuildRequires: perl(XML::LibXML)
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BuildRequires: perl(XML::LibXML::Reader)
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BuildRequires: perl(XML::Parser::PerlSAX)
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BuildRequires: perl(XML::SAX)
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BuildRequires: perl(XML::SAX::Base)
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BuildRequires: perl(XML::SAX::Writer)
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BuildRequires: perl(XML::Twig)
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BuildRequires: perl(XML::Writer)
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BuildRequires: perl(YAML)
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BuildRequires: perl(parent)
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BuildRequires: perl(version)
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Requires: perl(DBI)
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Requires: perl(Data::Stag)
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Requires: perl(Error)
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Requires: perl(GD)
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Requires: perl(Graph::Directed)
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Requires: perl(HTTP::Request::Common)
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Requires: perl(HTTP::Response)
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Requires: perl(IO::Scalar)
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Requires: perl(IO::String)
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Recommends: perl(Algorithm::Munkres)
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Recommends: perl(Array::Compare)
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Recommends: perl(Bio::Phylo)
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Recommends: perl(CGI)
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Recommends: perl(Clone)
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Recommends: perl(Convert::Binary::C)
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Recommends: perl(Error)
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Recommends: perl(GD)
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Recommends: perl(Graph) >= 0.5
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Recommends: perl(GraphViz)
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Recommends: perl(HTML::Entities)
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Recommends: perl(HTML::HeadParser) >= 3
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Recommends: perl(HTML::TableExtract)
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Recommends: perl(HTTP::Request::Common)
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Recommends: perl(Inline::C) >= 0.67
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Recommends: perl(IO::Scalar)
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Recommends: perl(List::MoreUtils)
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Recommends: perl(LWP::UserAgent)
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Recommends: perl(PostScript::TextBlock)
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Recommends: perl(Set::Scalar)
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Recommends: perl(Sort::Naturally)
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Recommends: perl(Spreadsheet::ParseExcel)
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Recommends: perl(SVG) >= 2.26
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Recommends: perl(SVG::Graph) >= 0.01
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Recommends: perl(XML::DOM)
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Recommends: perl(XML::DOM::XPath)
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Recommends: perl(XML::LibXML)
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Recommends: perl(XML::Parser)
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Recommends: perl(XML::Parser::PerlSAX)
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Recommends: perl(XML::SAX) >= 0.15
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Recommends: perl(XML::SAX::Writer)
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Recommends: perl(XML::Simple)
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Recommends: perl(XML::Twig)
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Recommends: perl(XML::Writer) >= 0.4
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Recommends: perl(YAML)
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Requires: perl(IPC::Run)
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Requires: perl(LWP::UserAgent)
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Requires: perl(List::MoreUtils)
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Requires: perl(Module::Build)
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Requires: perl(Set::Scalar)
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Requires: perl(Test::Most)
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Requires: perl(Test::RequiresInternet)
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Requires: perl(URI)
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Requires: perl(XML::DOM)
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Requires: perl(XML::DOM::XPath)
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Requires: perl(XML::LibXML)
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Requires: perl(XML::LibXML::Reader)
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Requires: perl(XML::Parser::PerlSAX)
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Requires: perl(XML::SAX)
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Requires: perl(XML::SAX::Base)
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Requires: perl(XML::SAX::Writer)
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Requires: perl(XML::Twig)
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Requires: perl(XML::Writer)
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Requires: perl(YAML)
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Requires: perl(parent)
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Requires: perl(version)
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%{perl_requires}
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%description
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@@ -106,28 +122,22 @@ and contribute your own if possible.
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%prep
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%setup -q -n %{cpan_name}-%{version}
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find . -type f ! -name \*.pl -print0 | xargs -0 chmod 644
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# fix for boo#1089992
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for i in $(grep -R "/usr/local/bin/perl" * | awk -F':' '{print $1}'); do
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perl -p -i -e 's|#!/usr/local/bin/perl|#!/usr/bin/perl|' "${i}"
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done
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# rpmlint
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perl -p -i -e 's|\r\n|\n|' ./ide/bioperl-mode/etc/images/bpmode-tool-dis.xpm
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perl -p -i -e 's|\r\n|\n|' ./ide/bioperl-mode/etc/images/bpmode-tool.xpm
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%build
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%{__perl} Build.PL installdirs=vendor
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./Build build flags=%{?_smp_mflags}
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perl Makefile.PL INSTALLDIRS=vendor
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make %{?_smp_mflags}
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%check
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./Build test
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make test
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%install
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./Build install destdir=%{buildroot} create_packlist=0
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%perl_make_install
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%perl_process_packlist
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%perl_gen_filelist
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%files -f %{name}.files
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%defattr(-,root,root,755)
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%doc AUTHORS Bio BUGS Changes deobfuscator DEPENDENCIES DEPRECATED examples ide maintenance models README.md scripts travis_scripts
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%doc AUTHORS Changes examples HACKING.md README.md
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%license LICENSE
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%changelog
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