76b00da068
automatic update OBS-URL: https://build.opensuse.org/request/show/690979 OBS-URL: https://build.opensuse.org/package/show/devel:languages:perl/perl-BioPerl?expand=0&rev=7
108 lines
4.6 KiB
Plaintext
108 lines
4.6 KiB
Plaintext
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Wed Apr 3 06:45:03 UTC 2019 - Stephan Kulow <coolo@suse.com>
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- updated to 1.7.5
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see /usr/share/doc/packages/perl-BioPerl/Changes
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-------------------------------------------------------------------
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Thu Sep 27 16:11:06 UTC 2018 - Christian Wittmer <chris@computersalat.de>
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- fix for boo#1089992
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* nothing provides /usr/local/bin/perl
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- fix license
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- fix wrong end of line encoding (dos)
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-------------------------------------------------------------------
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Wed Feb 7 16:10:23 UTC 2018 - coolo@suse.com
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- updated to 1.007002
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see /usr/share/doc/packages/perl-BioPerl/Changes
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-------------------------------------------------------------------
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Thu Jul 26 13:25:33 UTC 2012 - chris@computersalat.de
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- update to 1.6.901
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- [Notes]
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* Use of AcePerl is deprecated; Ace.pm isn't actively maintained, and
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modules using Ace will also be deprecated [lds, cjfields]
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* Minor bug fix release
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* Bio::SeqIO::gbxml tests require XML::SAX [hartzell]
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* Address Build.PL issues when DBI is not present [hartzell]
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* Skip gbxml.t and Interpro tests when modules not installed [cjfields]
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* Remove deprecated code for perl 5.14.0 compat [cjfields]
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* Due to schema changes and lack of support for older versions, support
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for NeXML 0.9 is only (very) partially implemented.
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See: https://redmine.open-bio.org/issues/3207
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- [Bug fixes]
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* [3205] - small fix to Bio::Perl blast_sequence() to make compliant with
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docs [genehack, cjfields]
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* $VERSION for CPAN/cpanm-based installs was broken; force setting of
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module version from dist_version (probably not the best way to do this,
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but it seems to work) [rbuels, cjfields]
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- update to 1.6.900 April 14, 2011
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- [Notes]
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* This will probably be the last release to add significant features to
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core modules; subsequent releases will be for bug fixes alone.
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We are planning on a restructuring of core for summer 2011, potentially
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as part of the Google Summer of Code. This may become BioPerl 2.0.
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* Version bump represents 'just prior to v 1.7'. We may have point
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releases to deal with bugs, with increments of 1.6.901, 1.6.902, etc.
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This code essentially is what is on the github master branch.
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- [New features]
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* Core code updated for perl 5.12.x [cjfields, Charle Tilford]
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* Bio::Tree refactor
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- major overhaul of Bio::Tree code by Greg Jordan, fixes several bugs
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- removal of Scalar::Util::weaken code, which was causing odd headaches
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with premature GC, memory leaks with perl 5.10.0, etc [cjfields]
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* Bio::DB::SeqFeature bug fixes for GBrowse2 compatibility [lds, scottcain,
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many others]
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* Bio::SeqIO::msout, Bio::SeqIO::mbsout - parsers for ms and mbs
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[Warren Kretzschmar]
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* Bio::SeqIO::gbxml
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- bug 2515 - new contribution [Ryan Golhar, jhannah]
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* Bio::Assembly::IO
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- support for reading Maq, Sam and Bowtie files [maj]
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- support for reading 454 GS Assembler (Newbler) ACE files [fangly]
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- bug 2483: support for writing ACE files [Joshua Udall, fangly]
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- bug 2599: support DBLINK annotation in GenBank files [cjfields]
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- bug 2726: reading/writing granularity: whole scaffold or one contig
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at a time [Joshua Udall, fangly]
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* Bio::OntologyIO
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- Added parsing of xrefs to OBO files, which are stored as secondary
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dbxrefs of the cvterm [Naama Menda]
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- General Interpro-related code refactors [dukeleto, rbuels, cjfields]
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* PAML code updated to work with PAML 4.4d [DaveMessina]
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- [Bug fixes]
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* [3198] - sort tabular BLAST hits by score [DaveMessina]
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* a lot of BUG fixes, please see Changes file for more info
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- remove obsolete Build patch
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- remove Authors from description
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- add deps patch and send upstream
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-------------------------------------------------------------------
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Wed Dec 1 13:30:46 UTC 2010 - coolo@novell.com
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- switch to perl_requires macro
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-------------------------------------------------------------------
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Mon Aug 16 15:02:25 UTC 2010 - chris@computersalat.de
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- enabled some more optional tests
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o Algorithm::Munkres, Convert::Binary::C, GraphViz,
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PostScript::TextBlock, Spreadsheet::ParseExcel
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-------------------------------------------------------------------
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Wed Aug 4 16:11:26 UTC 2010 - chris@computersalat.de
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- add Build patch
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o do not try to connect CPAN ;)
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- added recommended pkgs
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o + BuildRequires (recommended) --with test
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-------------------------------------------------------------------
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Mon Aug 2 21:13:45 UTC 2010 - chris@computersalat.de
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- initial package 1.6.1
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* created by cpanspec 1.78
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